Genome-wide profiling of heritable and de novo STR variations

Cited by (355)

Items 101–200 of 355

1. Benchmarking of small and large variants across tandem repeats
   Adam C. English, Egor Dolzhenko, Helyaneh Ziaei Jam, Sean K. McKenzie, Nathan D. Olson, Wouter De Coster, Jonghun Park, Bida Gu, Justin Wagner, Michael A. Eberle et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
2. Multi-omic quantitative trait loci link tandem repeat size variation to gene regulation in human brain
   Ya Cui, Frederick J. Arnold, Jason Sheng Li, Jie Wu, Dan Wang, Julien Philippe, Michael R. Colwin, Sebastian Michels, Chaorong Chen, Tamer Sallam et al. · 2025 · Nature Genetics
3. Satellite DNA Genomics: The Ongoing Story
   Manuel A. Garrido-Ramos, Miroslav Plohl, Eva Šatović-Vukšić · 2025 · International Journal of Molecular Sciences
4. Molecular Surveillance of Malaria Using the PF AmpliSeq Custom Assay for Plasmodium falciparum Parasites from Dried Blood Spot DNA Isolates from Peru
   Johanna Helena Kattenberg, Norbert J. van Dijk, Carlos Fernández-Miñope, Pieter Guetens, Mathijs Mutsaers, Dionicia Gamboa, Anna Rosanas‐Urgell · 2023 · BIO-PROTOCOL
5. A Census of Tandemly Repeated Polymorphic Loci in Genic Regions Through the Comparative Integration of Human Genome Assemblies
   Loredana M. Genovese, Filippo Geraci, Lucia Corrado, Eleonora Mangano, Romina D’Aurizio, Roberta Bordoni, Marco Severgnini, Giovanni Manzini, Gianluca De Bellis, Sandra D’Alfonso et al. · 2018 · Frontiers in Genetics
6. Insights from a genome-wide truth set of tandem repeat variation
   Ben Weisburd, Grace Tiao, Heidi L. Rehm · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
7. Deep Intronic FGF14 GAA Repeat Expansion in Late-Onset Cerebellar Ataxia
   Yi-Heng Zeng, Shi-Rui Gan, Wan-Jin Chen · 2023 · New England Journal of Medicine
8. Analysis and comparison of the STR genotypes called with HipSTR, STRait Razor and toaSTR by using next generation sequencing data in a Brazilian population sample
   Valle-Silva, Guilherme, Frontanilla, Tamara Soledad, Ayala, Jesús, Donadi, Eduardo Antonio, Simões, Aguinaldo Luiz, Castelli, Erick C., Mendes-Junior, Celso Teixeira · 2022 · Forensic Science International Genetics
9. Population Genetic Diversity and Phylogenetic Characteristics for High-Altitude Adaptive Kham Tibetan Revealed by DNATyperTM 19 Amplification System
   Xing Zou, Zheng Wang, Guanglin He, Mengge Wang, Yongdong Su, Jing Liu, Pengyu Chen, Shouyu Wang, Bo Gao, Zhao Li et al. · 2018 · Frontiers in Genetics
10. On the critical evaluation and confirmation of germline sequence variants identified using massively parallel sequencing
    Zuzana Kubiritova, Marianna Gyurászová, E. Nagyova, Michaela Hýblová, Mária Haršányová, Jaroslav Budiš, Rastislav Hekel, Juraj Gazdarica, František Ďuriš, Ľudevít Kádaši et al. · 2019 · Journal of Biotechnology
11. A worldwide map of swine short tandem repeats and their associations with evolutionary and environmental adaptations
    Zhongzi Wu, Huanfa Gong, Mingpeng Zhang, Xinkai Tong, Huashui Ai, Shijun Xiao, Miguel Pérez-enciso A, Bin Juan Yang, Lusheng Huang · 2021 · Genetics Selection Evolution
12. Mapping short tandem repeats for liver gene expression traits helps prioritize potential causal variants for complex traits in pigs
    Zhongzi Wu, Huanfa Gong, Zhimin Zhou, Tao Jiang, Ziqi Lin, Jing Li, Shijun Xiao, Bin Yang, Lusheng Huang · 2022 · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology
13. Deep sequencing of a large family of isogenic mice enables complex variants discovery and accurate phenotype mapping
    Flavia Villani, Thomas A. Sasani, Mikhail Maksimov, Mustafa Hakan Gunturkun, Nichole Ma, Yu-yu Ren, Daphna Rothschild, Hao Chen, Lu Lu, Beth L. Dumont et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
14. The kringle IV type 2 domain variant 4925G>A causes the elusive association signal of the LPA pentanucleotide repeat
    Rebecca Grüneis, Hansi Weißensteiner, Claudia Lamina, Sebastian Schönherr, Lukas Forer, Silvia Di Maio, Gertraud Streiter, Annette Peters, Christian Gieger, Florian Kronenberg et al. · 2022 · Journal of Lipid Research
15. Population-level genome-wide STR discovery and validation for population structure and genetic diversity assessment of Plasmodium species
    Ji-Ru Han, J. Munro, Anthony Kocoski, Alyssa E. Barry, M. Bahlo · 2022 · PLoS Genetics
16. Characterization of Microsatellite Distribution in Siamese Fighting Fish Genome to Promote Conservation and Genetic Diversity
    Pish Wattanadilokchatkun, Thitipong Panthum, Kitipong Jaisamut, Syed Farhan Ahmad, Sahabhop Dokkaew, Narongrit Muangmai, Prateep Duengkae, Worapong Singchat, Kornsorn Srikulnath · 2022 · Fishes
17. Defining a tandem repeat catalog and variation clusters for genome-wide analyses
    Ben Weisburd, Egor Dolzhenko, Mark F. Bennett, Matt Christopher Danzi, Isaac R. L. Xu, Hope A. Tanudisastro, Bida Gu, Adam C. English, Laurel Hiatt, Tom Mokveld et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
18. Phenome-wide association study of loci harboring de novo tandem repeat mutations in UK Biobank exomes
    Wendt, Frank R., Pathak, Gita A., Polimanti, Renato · 2022 · Nature Communications
19. Comprehensive landscape of non-CODIS STRs in global populations provides new insights into challenging DNA profiles
    Yuguo Huang, Mengge Wang, Chao Liu, Guanglin He · 2024 · Forensic Science International Genetics
20. Genome-wide identification of microsatellites for mapping, genetic diversity and cross-transferability in wheat (Triticum spp)
    Vikas Fandade, Pradeep Pratap Singh, Dalwinder Singh, Himanshu Sharma, Garima Thakur, Shivangi Saini, Prashant Kumar, Shrikant Subhash Mantri, Om Parkash Bishnoi, Joy Kumar Roy · 2023 · Gene
21. Genome-wide detection of somatic mosaicism at short tandem repeats
    Aarushi Sehgal, Helyaneh Ziaei Jam, Andrew Shen, Melissa Gymrek · 2024 · Bioinformatics
22. Direct measurement of the male germline mutation rate in individuals using sequential sperm samples
    Jonathan Evan Shoag, Amoolya Srinivasa, Caitlin A. Loh, Mei Hong Liu, Emilie Lassen, Shana Melanaphy, Benjamin M. Costa, Marta Grońska-Pęski, Nisrine T. Jabara, Shany Picciotto et al. · 2025 · Nature Communications
23. De novo identification and targeted sequencing of SSRs efficiently fingerprints Sorghum bicolor sub-population identity
    John P. Baggett, Richard L. Tillett, Elizabeth Cooper, Melinda K. Yerka · 2021 · PLoS ONE
24. Insertion/deletion and microsatellite alteration profiles in induced pluripotent stem cells
    Satoshi Kamimura, Tomo Suga, Yuko Hoki, Misato Sunayama, Kaori Imadome, Mayumi Fujita, Miki Nakamura, Ryoko Araki, Masumi Abe · 2021 · Stem Cell Reports
25. Nosocomial Malaria Transmissions Resolved by Genomic Analyses—A Retrospective Case Report Study in France: 2007–2021
    Romain Coppée, Véronique Sarrasin, Rizwana Zaffaroulah, Azza Bouzayene, Marc Théllier, Harold Noël, Jérôme Clain, Sandrine Houzé, the Investigation Study Group, Sophie Abgrall et al. · 2022 · Clinical Infectious Diseases
26. Tandem repeat variation shapes immune cell type-specific gene expression
    Hope A. Tanudisastro, Anna S. E. Cuomo, Ben Weisburd, Matthew J. Welland, Eleanor Spenceley, Michael Franklin, Angli Xue, Hao Lawrence Huang, Blake Bowen, Jianan Fan et al. · 2026 · Nature
27. Optical genome mapping enables accurate testing of large repeat expansions
    Bart P. G. H. van der Sanden, Kornelia Neveling, Syukri Shukor, Michael D. Gallagher, Joyce Lee, Stephanie L. Burke, Maartje Pennings, Ronald van Beek, Michiel Oorsprong, Ellen Kater‐Baats et al. · 2025 · Genome Research
28. Navigating triplet repeats sequencing: concepts, methodological challenges and perspective for Huntington’s disease
    Simone Maestri, Davide Scalzo, Gianluca Damaggio, Martina Zobel, Dario Besusso, Elena F. Cattaneo · 2024 · Nucleic Acids Research
29. Preparing for shotgun sequencing in forensic genetics – Evaluation of DNA extraction and library building methods
    Marie‐Louise Kampmann, Claus Børsting, Alberte Honoré Jepsen, Mikkel Meyer Andersen, Clara I.V. Aagreen, Brando Poggiali, Carina Grøntved Jønck, Niels Morling, Jeppe Dyrberg Andersen · 2025 · Forensic Science International Genetics
30. Mosaicism in Short Tandem Repeat Disorders: A Clinical Perspective
    Rose M. Doss, Susana Lopez-Ignacio, Anna M. Dischler, Laurel Hiatt, Harriet Dashnow, Martin W. Breuss, Caroline Dias · 2025 · Genes
31. Mutations of short tandem repeats explain abundant trait heritability in Arabidopsis
    Zhiqin Zhang, Juan Jiang, Yong‐Chao Xu, Craig Dent, Sridevi Sureshkumar, Sureshkumar Balasubramanian, Ya‐Long Guo · 2025 · Genome biology
32. Detecting Causal Variants in Mendelian Disorders Using Whole-Genome Sequencing
    Abdul Rezzak Hamzeh, T. Daniel Andrews, Matthew A. Field · 2021 · Methods in molecular biology
33. Forensic STR allele extraction using a machine learning paradigm
    Yao-Yuan Liu, David Welch, Ryan England, Janet Stacey, SallyAnn Harbison · 2019 · Forensic Science International Genetics
34. Mapping of susceptible variants for cold medicine-related Stevens–Johnson syndrome by whole-genome resequencing
    Yosuke Kawai, Yuki Hitomi, Mayumi Ueta, Seik‐Soon Khor, Ken Nakatani, Chie Sotozono, Shigeru Kinoshita, Masao Nagasaki, Katsushi Tokunaga · 2021 · npj Genomic Medicine
35. DSIM: Distributed Sequence Matching on Near-DRAM Accelerator for Genome Assembly
    Aman Sinha, Huei-Chun Yang, Peiyi Liu, Yen-Shi Kuo, Yuhao Fang, Tien-Shuo Chang, Kehan Li, Bo-Cheng Charles Lai · 2022 · IEEE Journal on Emerging and Selected Topics in Circuits and Systems
36. USAT: a bioinformatic toolkit to facilitate interpretation and comparative visualization of tandem repeat sequences
    Xuewen Wang, Bruce Budowle, Jianye Ge · 2022 · BMC Bioinformatics
37. Advances in forensic genetics: Exploring the potential of long read sequencing.
    Marcel Rodrigues Ferreira, T. M. T. Carratto, T. Frontanilla, R. S. Bonadio, Miten Jain, S. F. de Oliveira, Erick C. Castelli, C. Mendes-Junior · 2024 · Forensic Science International: Genetics
38. Abundance of ethnically biased microsatellites in human gene regions
    Nicholas Allen Kinney, Lin Kang, Laurel Eckstrand, Arichanah Pulenthiran, Peter Samuel, Ramu Anandakrishnan, Robin T. Varghese, Pawel Michalak, Harold R. Garner · 2019 · PLoS ONE
39. Comparison of NGS panel and Sanger sequencing for genotyping CAG repeats in the AR gene
    Maria Santa Rocca, Margherita Ferrarini, Aichi Msaki, Cinzia Vinanzi, Marco Ghezzi, Maurizio De Rocco Ponce, Carlo Foresta, Alberto Ferlin · 2020 · Molecular Genetics & Genomic Medicine
40. Accurate detection of tandem repeats exposes ubiquitous reuse of biological sequences
    Shu‐Ting Cho, Erik S. Wright · 2025 · Nucleic Acids Research
41. Assessing the recovery of Y chromosome microsatellites with population genomic data using Papio and Theropithecus genomes
    Giacomo Mutti, Gonzalo Oteo‐García, Matteo Caldon, María Joana Ferreira da Silva, Tânia Minhós, Guy Cowlishaw, Dada Gottelli, Élise Huchard, Alecia J. Carter, Felipe I. Martínez et al. · 2023 · Scientific Reports
42. Environmental radiation exposure at Chornobyl has not systematically affected the genomes or chemical mutagen tolerance phenotypes of local worms
    Sophia Tintori, Derin Çağlar, Patrick Ortiz, Ihor Chyzhevskyi, Timothy Alexander Mousseau, Matthew V. Rockman · 2024 · Proceedings of the National Academy of Sciences
43. Accurate measurement of microsatellite length by disrupting its tandem repeat structure
    Zihua Wang, Andrea B. Moffitt, Peter Andrews, Michael H. Wigler, Dan Levy · 2022 · Nucleic Acids Research
44. Validated WGS and WES protocols proved saliva-derived gDNA as an equivalent to blood-derived gDNA for clinical and population genomic analyses
    Kateřina Kvapilová, Pavol Mišenko, Ján Radvánszky, Ondřej Brzoň, Jaroslav Budiš, Juraj Gazdarica, Ondrej Pos, Marie Korabečná, Martin Kašný, Tomáš Szemes et al. · 2024 · BMC Genomics
45. Assessing and assuring interoperability of a genomics file format
    Jeffrey Niu, Eric G. Roberts, Danielle Denisko, Michael M. Hoffman · 2022 · Bioinformatics
46. A novel quantitative trait locus implicates Msh3 in the propensity for genome-wide short tandem repeat expansions in mice
    Mikhail O. Maksimov, Cynthia Wu, David George Ashbrook, Flavia Villani, Vincenza Colonna, Nima Mousavi, Nichole Ma, Lu Lu, Jonathan K. Pritchard, Alon Goren et al. · 2023 · Genome Research
47. Get ready for short tandem repeats analysis using long reads-the challenges and the state of the art
    Marija Chaushevska, Karmele Alapont-Celaya, Anne Kristine Schack, Łukasz Krych, M. Carmen Garrido-Navas, Anastasia Krithara, Gjorgji Madjarov · 2025 · Frontiers in Genetics
48. Short tandem repeats in populations of the Qinghai-Tibet Plateau and adjacent regions provide insights into high-altitude adaptation
    Yuguo Huang, Mengge Wang, Zhiyong Wang, Xiaojun Liu, Yuhang Feng, Jie Zhong, Hailin Huang, Jia Geng, Ting Tang, Chao Liu et al. · 2025 · Science Advances
49. Microsatellites used in forensics are in regions enriched for trait-associated variants
    Vivian Link, Yuómi Jhony A. Zavaleta, Rochelle-Jan Reyes, Linda Ding, Luyu Wang, Rori V. Rohlfs, Michael D. Edge · 2023 · iScience
50. Expanding horizons of tandem repeats in biology and medicine: Why ‘genomic dark matter’ matters
    Anthony John Hannan · 2023 · Emerging Topics in Life Sciences
51. A complete pipeline enables haplotyping and phasing macrohaplotype in long sequencing reads for polyploidy samples and a multi‐source DNA mixture
    Xuewen Wang, Melissa Muenzler, Jonathan L. King, Muyi Liu, Hongmin Li, Bruce Budowle, Jianye Ge · 2024 · Electrophoresis
52. HMOX1 Genetic Polymorphisms Display Ancestral Diversity and May Be Linked to Hypertensive Disorders in Pregnancy
    Tianyanxin Sun, Giovanna Cruz, Nima Mousavi, Ivana Marić, Alina N. Brewer, Ronald J. Wong, Nima Aghaeepour, Nazish Sayed, Joseph C. Wu, David K. Stevenson et al. · 2022 · Reproductive Sciences
53. Genome-wide patterns of de novo tandem repeat mutations and their contribution to autism spectrum disorders
    Ileena Mitra, Bonnie Huang, Nima Mousavi, Nichole Ma, Michael Lamkin, Richard Yanicky, Sharona Shleizer-Burko, Kirk E. Lohmueller, Melissa Gymrek · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
54. Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network
    Mathys Grapotte, Manu Saraswat, Chloé Bessière, Christophe Menichelli, Jordan A. Ramilowski, Jessica Severin, Yoshihide Hayashizaki, Masayoshi Itoh, Michihira Tagami, Mitsuyoshi Murata et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
55. Genome-wide profiling of genetic variation at tandem repeat from long reads
    Helyaneh Ziaei Jam, Justin M. Zook, Sara Javadzadeh, Jonghun Park, Aarushi Sehgal, Melissa Gymrek · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
56. Defining a tandem repeat catalog and variation clusters for genome-wide analyses and population databases
    Ben Weisburd, Egor Dolzhenko, Mark F. Bennett, Matt C. Danzi, Isaac R. L. Xu, Hope A. Tanudisastro, Bida Gu, Adam C. English, Laurel Hiatt, Tom Mokveld et al. · 2026 · The American Journal of Human Genetics
57. Interplay Between Polymorphic Short Tandem Repeats and Gene Expression Variation inCaenorhabditis elegans
    Gaotian Zhang, Erik C. Andersen · 2023 · Molecular Biology and Evolution
58. Detection of tandem repeats in the Capsicum annuum genome
    Valentina M. Rudenko, Eugene Korotkov · 2023 · DNA Research
59. The role of tandem repeat expansions in brain disorders
    Mary Anne Panoyan, Frank R. Wendt · 2023 · Emerging Topics in Life Sciences
60. A Computational Method to Quantify the Effects of Slipped Strand Mispairing on Bacterial Tetranucleotide Repeats
    Gregory P. Harhay, Dayna M. Harhay, James L. Bono, Sarah F. Capik, Keith D. DeDonder, Michael D. Apley, Brian V. Lubbers, Brad J. White, Robert L. Larson, Timothy P. L. Smith · 2019 · Scientific Reports
61. GC-rich repeat expansions: associated disorders and mechanisms
    Christopher Schröder, Bernhard Horsthemke, Christel Depienne · 2021 · Medizinische Genetik
62. Using synthetic chromosome controls to evaluate the sequencing of difficult regions within the human genome
    Andre L. M. Reis, Ira W. Deveson, Bindu Swapna Madala, Ted Wong, Chris Barker, Joshua Xu, Niall J. Lennon, Weida Tong, Tim R. Mercer · 2022 · Genome biology
63. Targeted Genotyping of Variable Number Tandem Repeats with adVNTR
    Mehrdad Bakhtiari, Sharona Shleizer-Burko, Melissa Gymrek, Vikas Bansal, Vineet Bafna · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
64. Epigenetic variation impacts ancestry-associated differences in the transcriptional response to influenza infection
    Katherine A Aracena, Yen‐Lung Lin, Kaixuan Luo, Alain Pacis, Saideep Gona, Zepeng Mu, Vania Yotova, Renata Sindeaux, Albéna Pramatarova, Marie-Michelle Simon et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
65. A phenome-wide association study of methylated GC-rich repeats identifies a GCC repeat expansion in AFF3 as a significant cause of intellectual disability
    Bharati Jadhav, Paras Garg, Joke J.F.A. van Vugt, Kristina Ibáñez, Delia Gagliardi, William Lee, Mariya Shadrina, Tom Mokveld, Egor Dolzhenko, Alejandro Martin-Trujillo et al. · 2023 · medRxiv
66. Copy Number Variations in Short Tandem Repeats Modulate Growth Traits in Penaeid Shrimp Through Neighboring Gene Regulation
    Hao Zhou, Guangfeng Qiang, Yan Xia, Jian Zhong Tan, Qiang Fu, Kun Luo, Xianhong Meng, Baolong Chen, Meijia Chen, Juan Sui et al. · 2025 · Animals
67. Dinucleotide (CA)n tandem repeats on the human X-chromosome and the history of the Mediterranean populations
    Josep Santamaría, Miguel M. Álvarez‐Álvarez, Esther M. Esteban, Elies Ramon, Pedro Moral · 2018 · Annals of Human Biology
68. Non-canonical RNA-DNA differences and other human genomic features are enriched within very short tandem repeats
    Hui Yu, Shilin Zhao, Scott A. Ness, Huining Kang, Quanhu Sheng, David C. Samuels, Olufunmilola Oyebamiji, Ying‐Yong Zhao, Yan Ping Guo · 2020 · PLoS Computational Biology
69. Microsatellite Genome-Wide Database Development for the Commercial Blackhead Seabream (Acanthopagrus schlegelii)
    Xinhui Luo, Li‐Chun Zhang, Songlin Chen · 2023 · Genes
70. Discovery and Quality Analysis of a Comprehensive Set of Structural Variants and Short Tandem Repeats
    David A. Jakubosky, Erin N. Smith, Matteo D’Antonio, Marc Jan Bonder, William W. Young Greenwald, Agnieszka D’Antonio‐Chronowska, Hiroko Matsui, Oliver Stegle, Stephen B. Montgomery, Christopher DeBoever et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
71. Microsatellites used in forensics are located in regions unusually rich in trait-associated variants
    Vivian Link, Y. J. A. Zavaleta, Rochelle-Jan Reyes, Linda Ding, Judy Wang, R. Rohlfs, Michael D. Edge · 2023 · bioRxiv
72. ATaRVa: Analysis of Tandem Repeat Variation from Long-Read Sequencing data
    Abishek Kumar Sivakumar, Anukrati Sharma, Sriram Sudarsanam, Sai Siddharth Krishnavajjhala, Harriet Dashnow, Akshay Kumar Avvaru, Divya Tej Sowpati · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
73. Genetic Insights into the Economic Toll of Cell Line Misidentification: A Comprehensive Review
    Weiskirchen, Ralf · 2026 · Medical Sciences
74. Genome-wide profiling of polymorphic short tandem repeats and their influence on gene expression and trait variation in diverse rice populations
    Xiyu Tan, Wanyong Zeng, Yujian Yang, Zhansheng Lin, Fuquan Li, Jianhong Liu, Shaotong Chen, Yao-Guang Liu, Weibo Xie, Xianrong Xie · 2025 · Journal of genetics and genomics/Journal of Genetics and Genomics
75. Multi-marker GWAS and variant-specific genomic prediction for growth traits in Pacific white shrimp
    Tianzan Lv, Yan Xia, Jian Zhong Tan, Qiang Fu, Kun Luo, Xianhong Meng, Baolong Chen, Meijia Chen, Juan Sui, Ping Dai et al. · 2025 · Scientific Reports
76. Long-read genome sequencing improves detection and functional interpretation of structural and repeat variants in autism
    Milad Mortazavi, James Guevara, Joshua Diaz, Stephen S. Tran, Helyaneh Ziaei Jam, Chloe Reeves, Serge Batalov, Kristen Jepsen, Matthew Bainbridge, Aaron D. Besterman et al. · 2026 · Cell Genomics
77. Shared genomic segments analysis identifies MHC class I and class III molecules as genetic risk factors for juvenile idiopathic arthritis
    Cecile Avery, Nicole Russell, Cody J. Steely, Aimee O. Hersh, John F. Bohnsack, Sampath Prahalad, Lynn B. Jorde · 2024 · Human Genetics and Genomics Advances
78. Development of polymorphic simple sequences repeats markers from whole gene resequencing data comparison of 68 Oncorhynchus mykiss
    Haibing Ma, Tianqing Huang, Enhui Liu, Gaochao Wang, Wei Gu, Gefeng Xu · 2024 · Frontiers in Marine Science
79. Population-Scale Polymorphic Short Tandem Repeat Provides an Alternative Strategy for Allele Mining in Cotton
    Huan Mei, Ting Zhao, Zeyu Dong, Jin Han, Biyu Xu, Rui‐Pin Chen, Jun Zhang, Juncheng Zhang, Yan Hu, Tianzhen Zhang et al. · 2022 · Frontiers in Plant Science
80. Rediscovering tandem repeat variation in schizophrenia: challenges and opportunities
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81. Multi-tissue analysis reveals short tandem repeats as ubiquitous regulators of gene expression and complex traits
    Stephanie Feudjio Feupe, Jonathan Margoliash, Catherine Wang, Shubham Saini, Richard Yanicky, Sharona Shleizer-Burko, Alon Goren, Melissa Gymrek · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
82. Retrospective cell lineage reconstruction in Humans using short tandem repeats
    Liming Tao, Ofir Raz, Zipora Marx, Manjusha Gosh, Sandra Huber, Julia Greindl-Junghans, Tamir Biezuner, Shiran Amir, Lilach Milo, Rivka Adar et al. · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
83. Enrichment of tandem repeat element variants near CHD genes identified by short- and long-read genome sequencing
    Abhilash Suresh, Sarah U. Morton, Daniel Quiat, Steven R. DePalma, Joshua Gorham, Martina K. Brueckner, Martin Tristani‐Firouzi, Bruce D. Gelb, Jonathan G. Seidman, Christine E. Seidman · 2025 · BMC Medical Genomics
84. TRsv: simultaneous detection of tandem repeat variations, structural variations, and short indels using long read sequencing data
    Shunichi Kosugi, Chikashi C. Terao · 2025 · Genome biology
85. Computational tools for tandem repeat detection using long-read sequencing
    Qian Liu, Jincheng Li · 2026 · Briefings in Bioinformatics
86. Microsatellite density landscapes illustrate short tandem repeats aggregation in the complete reference human genome
    Yun Xia, Douyue Li, Tingyi Chen, Saichao Pan, Hanrou Huang, Wenxiang Zhang, Yulin Liang, Yongzhuo Fu, Zhuli Peng, Hongxi Zhang et al. · 2024 · BMC Genomics
87. A comprehensive microsatellite landscape of human Y-DNA at kilobase resolution
    Douyue Li, Saichao Pan, Hongxi Zhang, Yongzhuo Fu, Zhuli Peng, Liang Zhang, Shan Peng, Fei Xu, Hanrou Huang, Ruixue Shi et al. · 2021 · BMC Genomics
88. Phenotypic Associations With the HMOX1 GT(n) Repeat in European Populations
    Fergus Hamilton, Ruth E. Mitchell, Peter Ghazal, Nicholas John Timpson · 2023 · American Journal of Epidemiology
89. VarSCAT: A computational tool for sequence context annotations of genomic variants
    Ning Wang, Sofia Khan, Laura L. Elo · 2023 · PLoS Computational Biology
90. Genome-wide identification of simple sequence repeats and development of polymorphic SSR markers in brown trout (Salmo trutta)
    Haibing Ma, Tianqing Huang, Wei Gu, Enhui Liu, Gaochao Wang, Bingqian Wang, Jianshe Zhou, Gefeng Xu · 2023 · Conservation Genetics Resources
91. Y and mitochondrial chromosomes in the heterogeneous stock rat population
    Faith Okamoto, Apurva S. Chitre, Thiago Missfeldt Sanches, Denghui Chen, Daniel B. Munro, Allegra T. Aron, Angela Beeson, Hannah V. Bimschleger, Maya Eid, Angel Garcia Martinez et al. · 2024 · G3 Genes Genomes Genetics
92. ProDerAl: reference position dependent alignment
    Benjamin Crysup, Bruce Budowle, August E. Woerner · 2021 · Bioinformatics
93. Compendious survey of protein tandem repeats in inbred mouse strains
    Ahmed Arslan · 2022 · BMC Genomic Data
94. Cancer Classification from Healthy DNA using Machine Learning
    Siddharth Jain, Bijan Mazaheri, Netanel Raviv, Jehoshua Bruck · 2019 · CaltechAUTHORS (California Institute of Technology)
95. Massive variation of short tandem repeats with functional consequences across strains of Arabidopsis thaliana
    Maximilian O. Press, Rajiv C. McCoy, Ashley N. Hall, Joshua M. Akey, Christine Queitsch · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
96. Genetic drivers of repeat expansion disorders localize to 3-D chromatin domain boundaries
    James Sun, Linda Zhou, Daniel J. Emerson, Thomas G. Gilgenast, Katelyn R. Titus, Jonathan A. Beagan, Jennifer E. Phillips‐Cremins · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
97. Adaptive protein evolution through length variation in short tandem repeats
    William B. Reinar, Anne Greulich, Ida M. Stø, Jonfinn B. Knutsen, Trond Reitan, Ole K. Tørresen, Sissel Jentoft, Melinka A. Butenko, Kjetill S. Jakobsen · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
98. Genomic properties of structural variants and short tandem repeats that impact gene expression and complex traits in humans
    David A. Jakubosky, Matteo D’Antonio, Marc Jan Bonder, Craig Smail, Margaret K. R. Donovan, William W. Young Greenwald, Agnieszka D’Antonio‐Chronowska, Hiroko Matsui, Oliver Stegle, Erin N. Smith et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
99. Cancer Classification from Healthy DNA
    Siddharth Jain, Bijan Mazaheri, Netanel Raviv, Jehoshua Bruck · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
100. The impact of Short Tandem Repeats on grey matter brain imaging derived phenotypes in UK Biobank
     William Sproviero, Upamanyu Ghose, Laura M. Winchester, Marco Fernandes, Danielle Newby, Daisy Sproviero, Najaf Amin, Bart Smets, Karen He, Ekaterina A. Khramtsova et al. · 2023 · medRxiv