Genome-wide profiling of heritable and de novo STR variations

Willems, Thomas, Zielinski, Dina, Yuan, Jie, Gordon, Assaf, Gymrek, Melissa, Erlich, Yaniv·2017·Nature Methods
DOI 10.1038/nmeth.4267

Cited by (355)

Items 301–355 of 355

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    Wu, Zhongzi, Huanfa Gong, Zhimin Zhou, Tao Jiang, Lin, Ziqi, Li, Jing, Shijun Xiao, Yang, Bin, Huang, Lusheng · 2022 · Figshare
  2. Additional file 7 of A comprehensive microsatellite landscape of human Y-DNA at kilobase resolution
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  3. Additional file 8 of Mapping short tandem repeats for liver gene expression traits helps prioritize potential causal variants for complex traits in pigs
    Wu, Zhongzi, Huanfa Gong, Zhimin Zhou, Tao Jiang, Lin, Ziqi, Li, Jing, Shijun Xiao, Yang, Bin, Huang, Lusheng · 2022 · Figshare
  4. Additional file 9 of A comprehensive microsatellite landscape of human Y-DNA at kilobase resolution
    Douyue Li, Saichao Pan, Zhang, Hongxi, Yongzhuo Fu, Zhuli Peng, Zhang, Liang, Shan Peng, Xu, Fei, Hanrou Huang, Shi, Ruixue et al. · 2021 · Figshare
  5. Additional file 13 of Mapping short tandem repeats for liver gene expression traits helps prioritize potential causal variants for complex traits in pigs
    Wu, Zhongzi, Huanfa Gong, Zhimin Zhou, Tao Jiang, Lin, Ziqi, Li, Jing, Shijun Xiao, Yang, Bin, Huang, Lusheng · 2022 · Figshare
  6. Additional file 1 of Compendious survey of protein tandem repeats in inbred mouse strains
    Ahmed Arslan · 2022 · Figshare
  7. Additional file 1 of LongTR: genome-wide profiling of genetic variation at tandem repeats from long reads
    Helyaneh Ziaei Jam, Justin M. Zook, Sara Javadzadeh, Jonghun Park, Aarushi Sehgal, Melissa Gymrek · 2024 · Figshare
  8. Additional file 3 of The mutational dynamics of short tandem repeats in large, multigenerational families
    Cody J. Steely, W. Scott Watkins, Baird, Lisa, Jorde, Lynn B. · 2024 · Figshare
  9. Additional file 10 of Mapping short tandem repeats for liver gene expression traits helps prioritize potential causal variants for complex traits in pigs
    Wu, Zhongzi, Huanfa Gong, Zhimin Zhou, Tao Jiang, Lin, Ziqi, Li, Jing, Shijun Xiao, Yang, Bin, Huang, Lusheng · 2022 · Figshare
  10. Additional file 16 of Mapping short tandem repeats for liver gene expression traits helps prioritize potential causal variants for complex traits in pigs
    Wu, Zhongzi, Huanfa Gong, Zhimin Zhou, Tao Jiang, Lin, Ziqi, Li, Jing, Shijun Xiao, Yang, Bin, Huang, Lusheng · 2022 · Figshare
  11. Additional file 2 of STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci
    Harriet Dashnow, Brent S. Pedersen, Laurel Hiatt, Joe Brown, Beecroft, Sarah J., Gianina Ravenscroft, Amy J. LaCroix, Phillipa J. Lamont, Roxburgh, Richard H., Rodrigues, Miriam J. et al. · 2024 · Figshare
  12. Additional file 7 of LUSTR: a new customizable tool for calling genome-wide germline and somatic short tandem repeat variants
    Lu, Jinfeng, Toro, Camilo, David R. Adams, Moreno, Cristiane Araujo Martins, Lee, Wan-Ping, Leung, Yuk Yee, Mathew B. Harms, Badri Narayan Vardarajan, Erin L. Heinzen · 2024 · Figshare
  13. Additional file 9 of Using synthetic chromosome controls to evaluate the sequencing of difficult regions within the human genome
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  14. Additional file 12 of Mapping short tandem repeats for liver gene expression traits helps prioritize potential causal variants for complex traits in pigs
    Wu, Zhongzi, Huanfa Gong, Zhimin Zhou, Tao Jiang, Lin, Ziqi, Li, Jing, Shijun Xiao, Yang, Bin, Huang, Lusheng · 2022 · Figshare
  15. Additional file 1 of DeepRepeat: direct quantification of short tandem repeats on signal data from nanopore sequencing
    Fang, Li, Qian Liu, Alex Mas, Pedro Gonzalez‐Alegre, Beverly L. Davidson, Wang, Kai · 2022 · Figshare
  16. Additional file 2 of Mapping short tandem repeats for liver gene expression traits helps prioritize potential causal variants for complex traits in pigs
    Wu, Zhongzi, Huanfa Gong, Zhimin Zhou, Tao Jiang, Lin, Ziqi, Jing Li, Shijun Xiao, Yang, Bin, Huang, Lusheng · 2022 · Figshare
  17. Additional file 7 of Mapping short tandem repeats for liver gene expression traits helps prioritize potential causal variants for complex traits in pigs
    Wu, Zhongzi, Huanfa Gong, Zhimin Zhou, Tao Jiang, Lin, Ziqi, Li, Jing, Shijun Xiao, Yang, Bin, Huang, Lusheng · 2022 · Figshare
  18. Additional file 1 of Validated WGS and WES protocols proved saliva-derived gDNA as an equivalent to blood-derived gDNA for clinical and population genomic analyses
    Kateřina Kvapilová, Pavol Mišenko, Ján Radvánszky, Ondřej Brzoň, Jaroslav Budiš, Juraj Gazdarica, Ondrej Pös, Marie Korabečná, Martin Kašný, Tomáš Szemes et al. · 2024 · Figshare
  19. Additional file 3 of LUSTR: a new customizable tool for calling genome-wide germline and somatic short tandem repeat variants
    Lu, Jinfeng, Toro, Camilo, David R. Adams, Moreno, Cristiane Araujo Martins, Lee, Wan-Ping, Leung, Yuk Yee, Mathew B. Harms, Badri Narayan Vardarajan, Erin L. Heinzen · 2024 · Figshare
  20. Additional file 8 of A comprehensive microsatellite landscape of human Y-DNA at kilobase resolution
    Douyue Li, Saichao Pan, Zhang, Hongxi, Yongzhuo Fu, Zhuli Peng, Zhang, Liang, Shan Peng, Xu, Fei, Hanrou Huang, Shi, Ruixue et al. · 2021 · Figshare
  21. Additional file 9 of LUSTR: a new customizable tool for calling genome-wide germline and somatic short tandem repeat variants
    Lu, Jinfeng, Toro, Camilo, David R. Adams, Moreno, Cristiane Araujo Martins, Lee, Wan-Ping, Leung, Yuk Yee, Mathew B. Harms, Badri Narayan Vardarajan, Erin L. Heinzen · 2024 · Figshare
  22. Additional file 1 of The mutational dynamics of short tandem repeats in large, multigenerational families
    Cody J. Steely, W. Scott Watkins, Baird, Lisa, Jorde, Lynn B. · 2024 · Figshare
  23. Additional file 6 of A comprehensive microsatellite landscape of human Y-DNA at kilobase resolution
    Douyue Li, Saichao Pan, Zhang, Hongxi, Yongzhuo Fu, Zhuli Peng, Zhang, Liang, Shan Peng, Xu, Fei, Hanrou Huang, Shi, Ruixue et al. · 2021 · Figshare
  24. Additional file 6 of The mutational dynamics of short tandem repeats in large, multigenerational families
    Cody J. Steely, W. Scott Watkins, Baird, Lisa, Jorde, Lynn B. · 2024 · Figshare
  25. Additional file 4 of STRsearch: a new pipeline for targeted profiling of short tandem repeats in massively parallel sequencing data
    Wang, Dong, Tao, Ruiyang, Li, Zhiqiang, Dun Pan, Wang, Zhuo, Li, Chengtao, Shi, Yongyong · 2020 · Figshare
  26. Additional file 11 of Mapping short tandem repeats for liver gene expression traits helps prioritize potential causal variants for complex traits in pigs
    Wu, Zhongzi, Huanfa Gong, Zhimin Zhou, Tao Jiang, Lin, Ziqi, Li, Jing, Shijun Xiao, Yang, Bin, Huang, Lusheng · 2022 · Figshare
  27. Additional file 2 of LongTR: genome-wide profiling of genetic variation at tandem repeats from long reads
    Helyaneh Ziaei Jam, Justin M. Zook, Sara Javadzadeh, Jonghun Park, Aarushi Sehgal, Melissa Gymrek · 2024 · Figshare
  28. Additional file 2 of Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data
    Chen, Hao, Lu, Yan, Lu, Dongsheng, Xu, Shuhua · 2021 · Figshare
  29. Additional file 6 of LUSTR: a new customizable tool for calling genome-wide germline and somatic short tandem repeat variants
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  30. Additional file 8 of LUSTR: a new customizable tool for calling genome-wide germline and somatic short tandem repeat variants
    Lu, Jinfeng, Toro, Camilo, David R. Adams, Moreno, Cristiane Araujo Martins, Lee, Wan-Ping, Leung, Yuk Yee, Mathew B. Harms, Badri Narayan Vardarajan, Erin L. Heinzen · 2024 · Figshare
  31. Additional file 2 of The mutational dynamics of short tandem repeats in large, multigenerational families
    Cody J. Steely, W. Scott Watkins, Baird, Lisa, Jorde, Lynn B. · 2024 · Figshare
  32. Additional file 1 of LUSTR: a new customizable tool for calling genome-wide germline and somatic short tandem repeat variants
    Lu, Jinfeng, Toro, Camilo, David R. Adams, Moreno, Cristiane Araujo Martins, Lee, Wan-Ping, Leung, Yuk Yee, Mathew B. Harms, Badri Narayan Vardarajan, Erin L. Heinzen · 2024 · Figshare
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  39. Accurate detection of mosaic mutations at short tandem repeats from bulk sequencing data
    Weixiang Wang, Wenlong Li, Chunyi Wang, Wenxuan Fan, Yonghe Xia, Xiaoxu Yang, Chong Chu, Yanmei Dou · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
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