chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data

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Items 301–400 of 1,002

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7. Post-translational modification localizes MYC to the nuclear pore basket to regulate a subset of target genes involved in cellular responses to environmental signals
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14. Single-cell multiregion epigenomic rewiring in Alzheimer’s disease progression and cognitive resilience
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17. A multi-omics atlas of the human retina at single-cell resolution
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19. Common and divergent gene regulatory networks control injury-induced and developmental neurogenesis in zebrafish retina
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21. scATAC-pro: a comprehensive workbench for single-cell chromatin accessibility sequencing data
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22. LKB1 inactivation modulates chromatin accessibility to drive metastatic progression
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23. Single cell dual-omic atlas of the human developing retina
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24. A human mutation in STAT3 promotes type 1 diabetes through a defect in CD8+ T cell tolerance
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27. Transcriptome dynamics of CD4+ T cells during malaria maps gradual transit from effector to memory
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28. Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks
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31. Time-resolved single-cell and spatial gene regulatory atlas of plants under pathogen attack
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32. Safeguard function of PU.1 shapes the inflammatory epigenome of neutrophils
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33. Integrated single-cell transcriptomics and epigenomics reveals strong germinal center–associated etiology of autoimmune risk loci
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34. The Cell Type–Specific 5hmC Landscape and Dynamics of Healthy Human Hematopoiesis and TET2 -Mutant Preleukemia
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35. Loss of Epigenetic Regulation Disrupts Lineage Integrity, Induces Aberrant Alveogenesis, and Promotes Breast Cancer
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67. Diversification of reprogramming trajectories revealed by parallel single-cell transcriptome and chromatin accessibility sequencing
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74. INO80 Chromatin Remodeling Coordinates Metabolic Homeostasis with Cell Division
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81. Deciphering the Transcriptional Regulatory Network Governing Starch and Storage Protein Biosynthesis in Wheat for Breeding Improvement
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82. Cross-disorder and disease-specific pathways in dementia revealed by single-cell genomics
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83. BROCKMAN: deciphering variance in epigenomic regulators by k-mer factorization
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84. OVOL2 induces mesenchymal-to-epithelial transition in fibroblasts and enhances cell-state reprogramming towards epithelial lineages
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85. Profiling Chromatin Accessibility at Single-Cell Resolution
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86. Structural and functional properties of mSWI/SNF chromatin remodeling complexes revealed through single-cell perturbation screens
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87. Epigenetic programming defines haematopoietic stem cell fate restriction
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88. Joint profiling of chromatin accessibility and CAR-T integration site analysis at population and single-cell levels
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89. Single-cell ATAC-seq signal extraction and enhancement with SCATE
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90. The gene regulatory basis of bystander activation in CD8 ⁺ T cells
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91. Targeting pro-inflammatory T cells as a novel therapeutic approach to potentially resolve atherosclerosis in humans
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92. Temporal coordination of the transcription factor response to H2O2 stress
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93. Bidirectional epigenetic editing reveals hierarchies in gene regulation
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94. AI-driven virtual cell models in preclinical research: technical pathways, validation mechanisms, and clinical translation potential
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95. Chromatin accessibility identifies diversity in mesenchymal stem cells from different tissue origins
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96. Longitudinal immune dynamics of mild COVID-19 define signatures of recovery and persistence
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