chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data

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Items 601–700 of 1,002

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9. OCT2 pre-positioning facilitates cell fate transition and chromatin architecture changes in humoral immunity
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14. Single-cell multimodal analyses reveal epigenomic and transcriptomic basis for birth defects in maternal diabetes
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18. Single-cell multiomics reveals the complexity of TGFβ signalling to chromatin in iPSC-derived kidney organoids
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19. Chromatin access regulates the formation of Müller glia‐derived progenitor cells in the retina
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21. GTAC enables parallel genotyping of multiple genomic loci with chromatin accessibility profiling in single cells
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23. Mapping the chromatin accessibility landscape of zebrafish embryogenesis at single-cell resolution by SPATAC-seq
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24. IL-4-induced SOX9 confers lineage plasticity to aged adult lung stem cells
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26. Antigen experience history directs distinct functional states of CD8+ CAR T cells during the antileukemia response
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27. Nuclear corepressors NCOR1/NCOR2 regulate B cell development, maintain genomic integrity and prevent transformation
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31. Epigenetic and 3D genome reprogramming during the aging of the human hippocampus
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34. Fundamental and practical approaches for single-cell ATAC-seq analysis
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42. Reactivation of the G1 enhancer landscape underlies core circuitry addiction to SWI/SNF
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53. Degradation of IKZF1 prevents epigenetic progression of T cell exhaustion in an antigen-specific assay
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71. Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei
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86. Multiomics and deep learning dissect regulatory syntax in human development
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87. Integrating transcription-factor abundance with chromatin accessibility in human erythroid lineage commitment
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88. Nuclear receptor Nr5a2 promotes diverse connective tissue fates in the jaw
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90. Epigenetic alterations affecting hematopoietic regulatory networks as drivers of mixed myeloid/lymphoid leukemia
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91. Topological identification and interpretation for single-cell epigenetic regulation elucidation in multi-tasks using scAGDE
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92. SCAN-ATAC-Sim: a scalable and efficient method for simulating single-cell ATAC-seq data from bulk-tissue experiments
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93. Single-cell technologies and analyses in hematopoiesis and hematological malignancies
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94. Genetic control of the pluripotency epigenome determines differentiation bias in mouse embryonic stem cells
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95. Asymmetrical forward and reverse developmental trajectories determine molecular programs of B cell antigen receptor editing
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96. Cross-species analysis of melanoma enhancer logic using deep learning
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