Detecting ultralow-frequency mutations by Duplex Sequencing
Kennedy, Scott R, Schmitt, Michael W, Fox, Edward J, Kohrn, Brendan F, Salk, Jesse J, Ahn, Eun Hyun, Prindle, Marc J, Kuong, Kawai J +3 more·2014·Nature Protocols
Cited by (462)
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- Abnormal oxidative metabolism in a quiet genomic background underlies clear cell papillary renal cell carcinomaXu, Jianing, Reznik, Ed, Lee, Ho-Joon, Gundem, Gunes, Jonsson, Philip, Sarungbam, Judy, Bialik, Anna, Sanchez-Vega, Francisco, Creighton, Chad J, Hoekstra, Jake et al. · 2019 · eLife
- A replication-linked mutational gradient drives somatic mutation accumulation and influences germline polymorphisms and genome composition in mitochondrial DNAMonica Sanchez-Contreras, Mariya T. Sweetwyne, Brendan F. Kohrn, Kristine A. Tsantilas, Michael J. Hipp, Elizabeth K. Schmidt, J. Fredrickson, Jeremy A. Whitson, M. Campbell, P. Rabinovitch et al. · 2021 · Nucleic Acids Research
- An optimized targeted Next-Generation Sequencing approach for sensitive detection of single nucleotide variantsSebastian Stasik, Caroline Schuster, Claudia Ortlepp, Uwe Platzbecker, Martin Bornhäuser, Johannes Schetelig, Gerhard Ehninger, Gunnar Folprecht, Christian Thiede · 2018 · Biomolecular Detection and Quantification
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- Technologies and Computational Analysis Strategies for CRISPR ApplicationsKendell Clement, Jonathan Y. Hsu, Matthew C. Canver, J. Keith Joung, Luca Pinello · 2020 · Molecular Cell
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- Impact of DNA lesion repair, replication and formation on the mutational spectra of environmental carcinogens: Aflatoxin B1 as a case studyBogdan I. Fedeles, John M. Essigmann · 2018 · DNA repair
- Different rates of spontaneous mutation of chloroplastic and nuclear viroids as determined by high-fidelity ultra-deep sequencingAmparo López-Carrasco, Cristina Ballesteros, Vicente Sentandreu, Sonia Delgado, Selma Gago‐Zachert, Ricardo Flores, Rafael Sanjuán · 2017 · PLoS Pathogens
- Incorporation of unique molecular identifiers in TruSeq adapters improves the accuracy of quantitative sequencingJungeui Hong, D. Gresham · 2017 · bioRxiv
- Accurate Sample Assignment in a Multiplexed, Ultrasensitive, High-Throughput Sequencing Assay for Minimal Residual Disease.J. Bartram, E. Mountjoy, T. Brooks, J. Hancock, H. Williamson, Gary Wright, J. Moppett, N. Goulden, M. Hubank · 2016 · Journal of Molecular Diagnostics
- Circulating Tumour DNA for Detecting Minimal Residual Disease in Multiple Myeloma.Trevor J Pugh · 2018 · Seminars in hematology (Print)
- Circulating tumor DNA in cancer diagnosis, monitoring, and prognosisSudeepto Saha, Yusha Araf, Salman Khan Promon · 2022 · Journal of the Egyptian National Cancer Institute
- Single-Molecule Sequencing Reveals Patterns of Preexisting Drug Resistance That Suggest Treatment Strategies in Philadelphia-Positive LeukemiasMichael W. Schmitt, Justin R. Pritchard, Scott M. Leighow, Bella I. Aminov, Lan W. Beppu, Daniel Seung Kim, John Hodgson, Victor M. Rivera, Lawrence A. Loeb, Jerald P. Radich · 2018 · Clinical Cancer Research
- Detection of Ultra-Rare Mitochondrial Mutations in Breast Stem Cells by Duplex SequencingE. Ahn, K. Hirohata, Brendan F. Kohrn, E. Fox, Chia-Cheng Chang, L. Loeb · 2015 · PLoS ONE
- Advances in single-cell DNA sequencing enable insights into human somatic mosaicismDiane D. Shao, Andrea J. Kriz, Daniel A. Snellings, Zinan Zhou, Yifan Zhao, Liz Enyenihi, Christopher A. Walsh · 2025 · Nature Reviews Genetics
- Comprehensive benchmarking and guidelines of mosaic variant calling strategiesYoo-Jin Jiny Ha, Seungseok Kang, Jisoo Kim, Junhan Kim, Se‐Young Jo, Sangwoo Kim · 2023 · Nature Methods
- Liquid Biopsy in Colorectal Carcinoma: Clinical Applications and ChallengesDrahomír Kolenčík, Stephanie N. Shishido, P. Pitule, Jeremy Mason, James B. Hicks, P. Kuhn · 2020 · Cancers
- Ultrasensitive detection of acute myeloid leukemia minimal residual disease using single molecule molecular inversion probesA. Waalkes, K. Penewit, B. Wood, David Wu, S. Salipante · 2017 · Haematologica
- Application of Circulating Tumor DNA as a Non-Invasive Tool for Monitoring the Progression of Colorectal CancerJiaolin Zhou, Lianpeng Chang, Yanfang Guan, Ling Yang, Xuefeng Xia, Liqiang Cui, Xin Yi, Guole Lin · 2016 · PLoS ONE
- Colorectal cancer is associated with the presence of cancer driver mutations in normal colonJúlia Matas, Brendan F. Kohrn, J. Fredrickson, Kelly T. Carter, Ming Yu, Ting Wang, X. Gui, T. Soussi, V. Moreno, W. Grady et al. · 2021 · medRxiv
- Mitochondrially-targeted APOBEC1 is a potent mtDNA mutator affecting mitochondrial function and organismal fitness in DrosophilaSimonetta Andreazza, Colby L. Samstag, Álvaro Sánchez-Martínez, Erika Fernández‐Vizarra, Aurora Gómez-Durán, Juliette J. Lee, Roberta Tufi, Michael J. Hipp, Elizabeth K. Schmidt, Thomas J. J. Nicholls et al. · 2019 · Nature Communications
- Liquid biopsies in lung cancer—time to implement research technologies in routine care?Linda Köhn, Mikael Johansson, Kjell Grankvist, Jonas A. Nilsson · 2017 · Annals of Translational Medicine
- Advances in Circulating Tumor DNA AnalysisSamantha O. Perakis, Martina Auer, Jelena Belic, Ellen Heitzer · 2017 · Advances in clinical chemistry
- Establishing Linkages Among DNA Damage, Mutagenesis, and Genetic DiseasesAshis K. Basu, John M. Essigmann · 2022 · Chemical Research in Toxicology
- Mitochondrial DNA Mutations are Associated with Ulcerative Colitis Preneoplasia but Tend to be Negatively Selected in CancerKathryn T. Baker, D. Nachmanson, S. Kumar, M. Emond, Cigdem H. Ussakli, T. Brentnall, Scott R. Kennedy, R. Risques · 2018 · Molecular Cancer Research
- ctDNA to Guide Adjuvant Therapy in Localized Colorectal Cancer (CRC)Laura Masfarré, Joana Vidal, Concepción Fernández‐Rodríguez, Clara O. Montagut · 2021 · Cancers
- Increased RNA virus population diversity improves adaptabilityFlorian Mattenberger, Marina Vila-Nistal, R. Geller · 2020 · Scientific Reports
- New approaches to molecular monitoring in CML (and other diseases)Jerald P. Radich, Cecilia C.S. Yeung, David Wu · 2019 · Blood
- Facile single-stranded DNA sequencing of human plasma DNA via thermostable group II intron reverse transcriptase template switchingDouglas C. Wu, Alan M. Lambowitz · 2017 · Scientific Reports
- Genome-Wide Estimation of the Spontaneous Mutation Rate of Human Adenovirus 5 by High-Fidelity Deep SequencingJennifer Risso-Ballester, J. Cuevas, R. Sanjuán · 2016 · PLoS Pathogens
- Tumour-informed liquid biopsies to monitor advanced melanoma patients under immune checkpoint inhibitionC. Schroeder, S. Gatidis, Olga Kelemen, Leon Schütz, I. Bonzheim, F. Muyas, P. Martus, J. Admard, Sorin Armeanu-Ebinger, B. Gückel et al. · 2024 · Nature Communications
- CRISPR-Cas9 Targeted Enrichment and Next-Generation Sequencing for Mutation DetectionMehrdad Malekshoar, Sajad Ataei Azimi, Arastoo Kaki, Leila Mousazadeh, Jamshid Motaei, Majid Vatankhah · 2023 · Journal of Molecular Diagnostics
- Development of new techniques and clinical applications of liquid biopsy in lung cancer managementKezhong Chen, Yue He, Wenxiang Wang, Xiaoqiu Yuan, David Paul Carbone, Fan Yang · 2024 · 中国科学通报:英文版
- PHLI-seq: constructing and visualizing cancer genomic maps in 3D by phenotype-based high-throughput laser-aided isolation and sequencingSungsik Kim, A. C. Lee, Han-Byoel Lee, Jinhyun Kim, Yushin Jung, H. Ryu, Yongju Lee, S. Bae, Min-Ju Lee, Kyungmin Lee et al. · 2018 · Genome Biology
- CRISPR Genome Engineering for Human Pluripotent Stem Cell ResearchSomali Chaterji, Eun Hyun Ahn, Deok‐Ho Kim · 2017 · Theranostics
- Streamlined analysis of duplex sequencing data with Du NovoNicholas Stoler, B. Arbeithuber, Wilfried M. Guiblet, K. Makova, Anton Nekrutenko · 2016 · Genome Biology
- Dynamics of Molecular Evolution in RNA Virus Populations Depend on Sudden Versus Gradual Environmental ChangeValerie J. Morley, P. E. Turner · 2017 · Evolution; international journal of organic evolution
- Technical progress in circulating tumor DNA analysis using next generation sequencingYunfei Bai, Zexin Wang, Zhiyu Liu, Geyu Liang, Wanjun Gu, Qinyu Ge · 2019 · Molecular and Cellular Probes
- Ultrasensitive and high-efficiency screen of de novo low-frequency mutations by o2n-seqKaile Wang, Shujuan Lai, Xiaoxu Yang, Tianqi Zhu, Xuemei Lu, Chung‐I Wu, Jue Ruan · 2017 · Nature Communications
- Antiprogestins reduce epigenetic field cancerization in breast tissue of young healthy womenThomas E. Bartlett, Iona Evans, Allison Jones, J. James E. Barrett, Shaun S. Haran, Daniel Reisel, Kiriaki Papaikonomou, J. Louise Jones, Chiara Maria Stella Herzog, Nora Pashayan et al. · 2022 · Genome Medicine
- An Omic and Multidimensional Spatial Atlas from Serial Biopsies of an Evolving Metastatic Breast CancerBrett Johnson, Allison Creason, Jayne M. Stommel, Jamie M. Keck, Swapnil Parmar, Courtney B. Betts, Aurora Blucher, Christopher Boniface, Elmar Bucher, Erik A. Burlingame et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Ultra-accurate Duplex Sequencing for the assessment of pretreatment ABL1 kinase domain mutations in Ph+ ALLNicholas James Short, Hagop M. Kantarjian, Rashmi Kanagal‐Shamanna, Koji Sasaki, Farhad Ravandi, Jörge E. Cortes, Marina Y Konopleva, Ghayas C. Issa, Steven Mitchell Kornblau, Guillermo Garcia‐Manero et al. · 2020 · Blood Cancer Journal
- Rational Protein Engineering Guided by Deep Mutational ScanningHyeonSeok Shin, Byung-Kwan Cho · 2015 · International Journal of Molecular Sciences
- Cell-Free Tumor DNA (cf-tDNA) Liquid Biopsy: Current Methods and Use in Brain Tumor ImmunotherapyJ. Wadden, Karthik Ravi, Vishal John, C. Babila, C. Koschmann · 2022 · Frontiers in Immunology
- Genotoxicity testing and recent advancesYang Luan, Masamitsu Honma · 2021 · Genome Instability & Disease
- Detection of genome edits in plants—from editing to seedRaymond D. Shillito, Sherry R. Whitt, Margit Ross, Farhad Ghavami, David De Vleesschauwer, Katelijn D’Halluin, Annelies Van Hoecke, Frank Meulewaeter · 2021 · In Vitro Cellular & Developmental Biology - Plant
- Globally defining the effects of mutations in a picornavirus capsidFlorian Mattenberger, V. Latorre, O. Tirosh, A. Stern, R. Geller · 2020 · bioRxiv
- POLQ suppresses interhomolog recombination and loss of heterozygosity at targeted DNA breaksLuther J. Davis, Kevin J. Khoo, Yinbo Zhang, N. Maizels · 2020 · Proceedings of the National Academy of Sciences of the United States of America
- Next-Generation Molecular Residual Disease Assays: Do We Have the Tools to Evaluate Them Properly?Daniel Stetson, Paul Labrousse, Hugh Russell, David M. Shera, Christopher Abbosh, Brian Andrew Dougherty, J. Carl Barrett, Darren Hodgson, James Hadfield · 2024 · Journal of Clinical Oncology
- Principles of digital sequencing using unique molecular identifiersDaniel Andersson, Firaol Tamiru Kebede, Mandy Escobar, Tobias Österlund, Anders Ståhlberg · 2024 · Molecular Aspects of Medicine
- Resistance of mitochondrial DNA to cadmium and Aflatoxin B1 damage-induced germline mutation accumulation in C. elegansTess C. Leuthner, Laura Benzing, Brendan F. Kohrn, Christina M. Bergemann, Michael J. Hipp, Kathleen A. Hershberger, Danielle Ferraz Mello, Tymofii Sokolskyi, Kevin Stevenson, Ilaria R Merutka et al. · 2022 · Nucleic Acids Research
- Genomic Mosaicism Formed by Somatic Variation in the Aging and Diseased BrainIsabel M. Costantino, Juliet Nicodemus, Jerold J. M. Chun · 2021 · Genes
- Circulating Tumor DNA Testing for Homology Recombination Repair Genes in Prostate Cancer: From the Lab to the ClinicA. Cimadamore, Liang Cheng, F. Massari, M. Santoni, Laura Pepi, C. Franzese, M. Scarpelli, A. López-Beltran, A. Galosi, R. Montironi · 2021 · International Journal of Molecular Sciences
- Mutation assay using single-molecule real-time (SMRTTM) sequencing technologyT. Matsuda, Shun Matsuda, M. Yamada · 2015 · Genes and Environment
- Capturing Tumor Heterogeneity and Clonal Evolution by Circulating Tumor DNA ProfilingFlorian Scherer · 2019 · Recent results in cancer research/Recent Results in Cancer Research
- Error-corrected Duplex Sequencing enables direct detection and quantification of mutations in human TK6 cells with strong inter-laboratory consistencyE. Cho, C. Swartz, A. Williams, Miriam Rivas, L. Recio, K. Witt, Elizabeth K. Schmidt, J. Yaplee, Thomas H. Smith, Phu Van et al. · 2023 · Mutation Research. Genetic Toxicology and Environmental Mutagenesis
- Detection of genome-wide low-frequency mutations with Paired-End and Complementary Consensus Sequencing (PECC-Seq) revealed end-repair-derived artifacts as residual errorsXin-Yue You, Suresh Thiruppathi, Wei-Ying Liu, Yi-Yi Cao, M. Naito, C. Furihata, M. Honma, Yang Luan, Takayoshi Suzuki · 2019 · Archives of Toxicology
- Characterization of TP53 mutations in Pap test DNA of women with and without serous ovarian carcinomaJeffrey D. Krimmel‐Morrison, Talayeh S. Ghezelayagh, Shenyi Lian, Yuezheng Zhang, Jeanne Fredrickson, Daniela Nachmanson, Kathryn Terese Baker, Marc R. Radke, Enna Hun, Barbara M. Norquist et al. · 2019 · Gynecologic Oncology
- Mutational Analysis of Field Cancerization in Bladder CancerT. Strandgaard, I. Nordentoft, P. Lamy, E. Christensen, Mathilde Borg Houlberg Thomsen, J. B. Jensen, L. Dyrskjøt · 2019 · bioRxiv
- Targeted error-suppressed quantification of circulating tumor DNA using semi-degenerate barcoded adapters and biotinylated baitsM. Alcaide, Stephen L. Yu, J. Davidson, Marco Albuquerque, K. Bushell, D. Fornika, S. Arthur, B. Grande, S. McNamara, M. C. du Tertre et al. · 2017 · Scientific Reports
- Methods and applications of genome-wide profiling of DNA damage and rare mutationsGerd P. Pfeifer, Seung‐Gi Jin · 2024 · Nature Reviews Genetics
- The Evolutionary Interplay of Somatic and Germline Mutation RatesAnnabel C. Beichman, Luke Zhu, Kelley Harris · 2024 · Annual Review of Biomedical Data Science
- Circulating tumor DNA in Hodgkin lymphomaMária Maco, Kristýna Kupcová, Vaclav Herman, Iva Hamová, Tomáš Kozák, Heidi Móciková, Ondřej Havránek, On behalf of the Czech Hodgkin Lymphoma Study Group · 2022 · Annals of Hematology
- Significant impact of circulating tumour DNA mutations on survival in metastatic breast cancer patientsA. Muendlein, K. Geiger, Stella Gaenger, T. Dechow, Christoph Nonnenbroich, A. Leiherer, H. Drexel, A. Gaumann, W. Jagla, T. Winder et al. · 2021 · Scientific Reports
- Evaluation of chemical mutagenicity using next generation sequencing: A reviewHua Du, Bo-Hu Pan, Tao Chen · 2017 · Journal of Environmental Science And Health Part C - Environmental Carcinogenesis & Ecotoxicology Reviews
- Circulating cell-free DNA in hematological malignanciesLieselot Buedts, Peter Vandenberghe · 2016 · Haematologica
- De novo mutation rates at the single-mutation resolution in a human HBB gene region associated with adaptation and genetic diseaseDaniel Melamed, Yuval Nov, Assaf Malik, Michael Bright Yakass, Evgeni Bolotin, Revital Shemer, Edem Kojo Hiadzi, Karl L. Skorecki, Adi Livnat · 2022 · Genome Research
- The Expectations and Challenges of Wildlife Disease Research in the Era of Genomics: Forecasting with a Horizon Scan-like ExerciseRobert R. Fitak, Jennifer D. Antonides, Eric J. Baitchman, Elisa Bonaccorso, Joséphine M. Braun, Steven V. Kubiski, Elliott S. Chiu, Anna C. Fagre, Roderick B. Gagne, Justin S. Lee et al. · 2019 · Journal of Heredity
- Defining, distinguishing and detecting the contribution of heterogeneous methylation to cancer heterogeneityThomas R. Pisanic, Pornpat Athamanolap, Tza‐Huei Wang · 2016 · Seminars in Cell and Developmental Biology
- Werner syndrome through the lens of tissue and tumour genomicsMari Tokita, Scott R. Kennedy, Rosa Ana Risques, Stephen G. Chun, Colin C. Pritchard, Junko Oshima, Yan Liu, PETER K. BRYANT-GREENWOOD, Piri L. Welcsh, Raymond J. Monnat · 2016 · Scientific Reports
- Liquid Biopsy and Challenge of Assay Heterogeneity for Minimal Residual Disease Assessment in Colon Cancer TreatmentGiovanni Crisafulli · 2025 · Genes
- Using unique molecular identifiers to improve allele calling in low-template mixtures.Benjamin Crysup, Sammed N. Mandape, J. King, Melissa K. Muenzler, Kapema Bupe Kapema, A. Woerner · 2022 · Forensic Science International: Genetics
- Myometrial oxidative stress drives MED12 mutations in leiomyomaYi-Nuo Li, Xiu-Hua Xu, Huma Asif, Yue Feng, Brendan F. Kohrn, Scott R. Kennedy, J. Kim, Jian-Jun Wei · 2022 · Cell & Bioscience
- Discovery of an unusually high number of de novo mutations in sperm of older men using duplex sequencingRenato Salazar, B. Arbeithuber, Maja Ivanković, Monika Heinzl, S. Moura, Ingrid Hartl, T. Mair, Angelika Lahnsteiner, T. Ebner, O. Shebl et al. · 2022 · Genome Research
- An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancerBrett Johnson, Allison Creason, Jayne M. Stommel, Jamie M. Keck, Swapnil S Parmar, Courtney B. Betts, Aurora Blucher, Christopher T. Boniface, Elmar Bucher, Erik A. Burlingame et al. · 2022 · Cell Reports Medicine
- Dissecting single-cell genomes through the clonal organoid techniqueJeonghwan Youk, Hyun Woo Kwon, Ryul Kim, Young Seok Ju · 2021 · Experimental & Molecular Medicine
- Sex and smoking bias in the selection of somatic mutations in human bladderFerriol Calvet, Raquel Blanco Martínez-Illescas, Ferran Muiños, Maria Tretiakova, Elena S. Latorre-Esteves, Jeanne Fredrickson, Maria A. Andrianova, Stefano Pellegrini, Axel Rosendahl Huber, Joan E. Ramis-Zaldivar et al. · 2025 · Nature
- Surpassing sensitivity limits in liquid biopsyT. Moser, Ellen Heitzer · 2024 · Science
- Intra-host changes in Kaposi sarcoma-associated herpesvirus genomes in Ugandan adults with Kaposi sarcomaJ. C. Santiago, Jason D. Goldman, Hong Zhao, A. Pankow, F. Okuku, Michael W. Schmitt, Lennie H. Chen, C. A. Hill, C. Casper, W. Phipps et al. · 2021 · PLoS Pathogens
- Detecting de novo mitochondrial mutations in angiosperms with highly divergent evolutionary ratesAmanda K. Broz, Gus Waneka, Zhi-Qiang Wu, Matheus Fernandes Gyorfy, Daniel B. Sloan · 2020 · bioRxiv
- Mutational Pressure Drives Differential Genome Conservation in Two Bacterial Endosymbionts of Sap-Feeding InsectsGus Waneka, Yumary M Vasquez, G. Bennett, Daniel B. Sloan · 2020 · bioRxiv
- Precision oncology: lessons learned and challenges for the futureHsih‐Te Yang, Ronak H. Shah, David H. Tegay, Kenan Onel · 2019 · Cancer Management and Research
- Location analysis of 8-oxo-7,8-dihydroguanine in DNA by polymerase-mediated differential codingFeng Tang, Shan Liu, Qiao-Ying Li, Jun Jie Yuan, Lin Li, Yinsheng Wang, Bi‐Feng Yuan, Yu‐Qi Feng · 2019 · Chemical Science
- Modernizing Human Cancer Risk Assessment of TherapeuticsMark R. Fielden, Lucas D. Ward, Sheroy Minocherhomji, Paul Nioi, Herve N. Lebrec, David Jacobson‐Kram · 2017 · Trends in Pharmacological Sciences
- Evaluation of whole exome sequencing by targeted gene sequencing and Sanger sequencingYa-Sian Chang, Hsien‐Da Huang, Kun‐Tu Yeh, Jan‐Gowth Chang · 2017 · Clinica Chimica Acta
- Comparison of Major and Minor Viral SNPs Identified through Single Template Sequencing and Pyrosequencing in Acute HIV-1 InfectionShyamala Iyer, Eleanor Casey, Heather Bouzek, Moon Kim, W. Deng, Brendan B. Larsen, Hong Zhao, Roger E Bumgarner, M. Rolland, J. Mullins · 2015 · PLoS ONE
- Assessment of gene–disease associations and recommendations for genetic testing for somatic variants in vascular anomalies by VASCERN-VASCANicole Revençu, Astrid Eijkelenboom, Claire Bracquemart, Pia Alhopuro, Judith Armstrong, Eulàlia Baselga, Claudia Cesario, Maria Lisa Dentici, Mélanie Eyries, Sofia Frisk et al. · 2024 · Orphanet Journal of Rare Diseases
- Tissue mosaicism following stem cell aging: blood as an exemplarChiraag Deepak Kapadia, Margaret A. Goodell · 2024 · Nature Aging
- Real-Time Molecular Monitoring in Acute Myeloid Leukemia With Circulating Tumor DNADeepshi Thakral, Ritu Gupta, Ranjit Kumar Sahoo, Pramod Kumar Verma, Indresh Kumar, Sangeeta Vashishtha · 2020 · Frontiers in Cell and Developmental Biology