Detecting ultralow-frequency mutations by Duplex Sequencing
Kennedy, Scott R, Schmitt, Michael W, Fox, Edward J, Kohrn, Brendan F, Salk, Jesse J, Ahn, Eun Hyun, Prindle, Marc J, Kuong, Kawai J +3 more·2014·Nature Protocols
Cited by (462)
Items 201–300 of 462
- Dose-Related Mutagenic and Clastogenic Effects of Benzo[b]fluoranthene in Mouse Somatic Tissues Detected by Duplex Sequencing and the Micronucleus AssayD. Schuster, D. LeBlanc, Gu Zhou, M. Meier, A. Dodge, P. White, Alexandra S. Long, A. Williams, C. Hobbs, A. Diesing et al. · 2024 · Environmental Science and Technology
- Assessing the genotoxicity of N‐nitrosodiethylamine with three in vivo endpoints in male Big Blue® transgenic and wild‐type C57BL/6N miceShaofei Zhang, S. Coffing, W. C. Gunther, M. Homiski, R. Spellman, Phu Van, Maik Schuler · 2024 · Environmental and Molecular Mutagenesis
- A high-resolution landscape of mutations in the BCL6 super-enhancer in normal human B cellsJiang-Cheng Shen, Ashwini S. Kamath‐Loeb, Brendan F. Kohrn, Keith R. Loeb, Bradley D. Preston, Lawrence A. Loeb · 2019 · Proceedings of the National Academy of Sciences
- Detection of Low-Frequency Mutations and Identification of Heat-Induced Artifactual Mutations Using Duplex SequencingE. Ahn, Seung Hyuk T. Lee · 2019 · International Journal of Molecular Sciences
- Clinical impact of circulating tumor DNA to track minimal residual disease in colorectal cancer patients. Hopes and limitationsCharbel Soueidy, Aziz Zaanan, Maximiliano Gelli, Émilie Moati, Claire Gallois, Valérie Taly, Pierre Laurent‐Puig, Léonor Benhaïm, Julien Taı̈eb · 2024 · ESMO Gastrointestinal Oncology
- Effects of urban-induced mutations on ecology, evolution and healthMarc T. J. Johnson, Irtaqa Arif, Francesco Marchetti, Jason Munshi‐South, Rob W. Ness, Marta Szulkin, Brian C. Verrelli, Carole Lyn Yauk, Daniel N. Anstett, Warren Booth et al. · 2024 · Nature Ecology & Evolution
- Mitochondrial mutations in Caenorhabditis elegans show signatures of oxidative damage and an AT-biasGus Waneka, Joshua M. Svendsen, Justin C. Havird, Daniel B. Sloan · 2021 · bioRxiv
- Decreased mitochondrial mutagenesis during transformation of breast stem cells into tumorigenic cellsE. Ahn, Seung Hyuk T. Lee, Joon Yup Kim, Chia-Cheng Chang, L. Loeb · 2016 · Cancer Research
- Origins of Second Malignancies in Children and Mutational Footprint of Chemotherapy in Normal TissuesM. Sánchez-Guixé, F. Muiños, Morena Pinheiro-Santin, V. González-Huici, C. J. Rodriguez-Hernandez, A. Avgustinova, C. Lavarino, A. González-Pérez, J. Mora, N. López-Bigas · 2024 · Cancer Discovery
- Moving toward a conceptualization of measurable residual disease in myelodysplastic syndromesEduard Schulz, Peter D. Aplan, Sylvie D. Freeman, Steven Zivko Pavletic · 2023 · Blood Advances
- A quantification method of somatic mutations in normal tissues and their accumulation in pediatric patients with chemotherapySho Ueda, Satoshi Yamashita, Miho Nakajima, Tadashi Kumamoto, Chitose Ogawa, Yuyu Liu, Harumi Yamada, Emi Kubo, Naoko Hattori, Hideyuki Takeshima et al. · 2022 · Proceedings of the National Academy of Sciences
- Subclonal landscape of cancer drives resistance to immune therapy.D. J. Craig, Morgan Bailey, Olivia Noe, Kada K Williams, L. Stanbery, D. Hamouda, J. Nemunaitis · 2022 · Cancer Treatment and Research Communications
- The promise of toxicogenomics for genetic toxicology: past, present and futureRhiannon M. David · 2020 · Mutagenesis
- The stochastic nature of errors in next-generation sequencing of circulating cell-free DNADavid A. Nix, S. Hellwig, Christopher C. Conley, Alun Thomas, Carrie L Fuertes, Cindy Hamil, P. Bhetariya, I. Garrido-Laguna, G. Marth, M. Bronner et al. · 2020 · PLoS ONE
- Extracellular vesicles and ctDNA in lung cancer: biomarker sources and therapeutic applicationsCheng-Liang Huang, Si-Tong Liu, X. Tong, Hong Fan · 2018 · Cancer Chemotherapy and Pharmacology
- Bioinformatics Analysis for Cell-Free Tumor DNA Sequencing Data.Shi-Fu Chen, Ming Liu, Yanqing Zhou · 2018 · Methods in molecular biology
- Circulating tumor DNA determinants of response and outcome in relapsed/refractory mantle cell lymphomaLeo Meriranta, Rasmus Rask Kragh Jørgensen, Annika Pasanen, Arne Kolstad, Martin Hutchings, Carsten Utoft Niemann, Tarec Christoffer El‐Galaly, Jon Riise, Jacob Haaber Christensen, Kristina Sonnevi et al. · 2025 · Blood Advances
- Alignment between Duplex Sequencing and transgenic rodent mutation assay data in the assessment of in vivo NDMA-induced mutagenesisAnne L. Ashford, Daniela Nachmanson, J. Wills, Jacob E. Higgins, Thomas H. Smith, K. C. Vavra, F. Dahalan, Jonathan Howe, Joanne M. Elloway, J. Salk et al. · 2025 · bioRxiv
- Genome-wide direct quantification of in vivo mutagenesis using high-accuracy paired-end and complementary consensus sequencingXin-Yue You, Yi-Yi Cao, Takayoshi Suzuki, Jie Shao, Benzhan Zhu, Kenichi Masumura, Jing Xi, Wei-Ying Liu, Xin-Yu Zhang, Yang Luan · 2023 · Nucleic Acids Research
- Adopting Duplex Sequencing Technology for Genetic Toxicity Testing: A Proof-of-Concept Mutagenesis Experiment with N-Ethyl-N-Nitrosourea (ENU)-Exposed RatsS. Smith-Roe, Cheryl A. Hobbs, Victoria Hull, J. Auman, L. Recio, Michael A. Streicker, Miriam Rivas, G. Pratt, Fang Y. Lo, J. Higgins et al. · 2023 · Mutation Research. Genetic Toxicology and Environmental Mutagenesis
- Adopting Duplex Sequencing™ Technology for Genetic Toxicity Testing: A Proof-of-Concept Mutagenesis Experiment with N-Ethyl-N-Nitrosourea (ENU)-Exposed RatsS. Smith-Roe, Cheryl A. Hobbs, Victoria Hull, J. Auman, L. Recio, Michael A. Streicker, Miriam V. Rivas, G. Pratt, Fang Y. Lo, J. Higgins et al. · 2023 · bioRxiv
- An update on advances in new developing DNA conjugation diagnostics and ultra-resolution imaging technologies: Possible applications in medical and biotechnological utilities.Nasrin Mohajeri, Mahsa Imani, A. Akbarzadeh, Alireza Sadighi, N. Zarghami · 2019 · Biosensors & bioelectronics
- Impact of preleukemic mutations and their persistence on hematologic recovery after induction chemotherapy for AMLTracy Murphy, Jinfeng Zou, Georgina S. Daher-Reyes, Andrea Arruda, Vikas K Gupta, Caroline Jane McNamara, Mark David Minden, Aaron David Schimmer, Hassan Abdulmaoula Sibai, Karen W L Yee et al. · 2019 · Blood Advances
- On statistical modeling of sequencing noise in high depth data to assess tumor evolutionR. Rabadán, G. Bhanot, Sonia Marsilio, N. Chiorazzi, L. Pasqualucci, Hossein Khiabanian · 2017 · Journal of statistical physics
- Integration of intra-sample contextual error modeling for improved detection of somatic mutations from deep sequencingS. Abelson, Andy G. X. Zeng, Ido Nofech-Mozes, Ting-Ting Wang, Stanley W. K. Ng, M. Minden, Trevor J Pugh, P. Awadalla, L. Shlush, T. Murphy et al. · 2020 · Science Advances
- Rare haplotype load as marker for lethal mutagenesisJosep Gregori, María Eugenia Soria, Isabel Gallego, Mercedes Guerrero-Murillo, Juan Ignacio Esteban, Josep Quer, Celia Perales, Esteban Domingo · 2018 · PLoS ONE
- Implementing circulating tumor DNA analysis in a clinical laboratory: A user manualThibaud Koessler, Alfredo Addeo, Thierry P. Nouspikel · 2019 · Advances in clinical chemistry
- Precision medicine in cutaneous melanoma—A comprehensive reviewMarkus Reitmajer, Lukas Flatz · 2025 · Journal of the European Academy of Dermatology and Venereology
- Allele frequency selection and no age-related increase in human oocyte mitochondrial mutationsB. Arbeithuber, Kate Anthony, Bonnie Higgins, P. Oppelt, O. Shebl, Irene Tiemann-Boege, Francesca Chiaromonte, Thomas Ebner, Kateryna D. Makova · 2025 · Science Advances
- Measurable residual disease (MRD) as a surrogate end point for clinical drug approval in acute myeloid leukemia (AML): Perspectives from the MRD Partnership and Alliance in AML Clinical Treatment ConsortiumM. Boyiadzis, Andrew H. Wei, B. Paiva, Sylvie D. Freeman, G. Kaspers, B. Chyla, S. Hersey, Reshma Patel, Brian Maloney, Marie-Helene Blanchet Zumofen et al. · 2025 · Cancer
- Hawk-Seq™ differentiates between various mutations in Salmonella typhimurium TA100 strain caused by exposure to Ames test-positive mutagensYuki Otsubo, S. Matsumura, Naohiro Ikeda, Osamu Morita · 2021 · Mutagenesis
- Quantification of cancer driver mutations in human breast and lung DNA using targeted, error‐corrected CarcSeqKelly L. Harris, Vijay Walia, Bin-Sheng Gong, Karen L. McKim, Meagan B. Myers, Joshua Xu, Barbara L. Parsons · 2020 · Environmental and Molecular Mutagenesis
- Low-level parental mosaicism affects the recurrence risk of holoprosencephalyP. Hu, Ariel F. Martinez, P. Kruszka, Seth I. Berger, E. Roessler, M. Muenke · 2018 · Genetics in Medicine
- Mapping single-cell diploid chromatin fiber architectures using DAF-seqElliott G. Swanson, Yi-Zi Mao, Ben Mallory, M. Vollger, Stephanie C. Bohaczuk, Christopher B. Oliveira, Daniel Lyon, J. Ranchalis, Nancy L. Parmalee, Barak A. Cohen et al. · 2025 · Nature Biotechnology
- The human brain through the lens of somatic mosaicismS. Bizzotto · 2023 · Frontiers in Neuroscience
- Duplex Sequencing Uncovers Recurrent Low-frequency Cancer-associated Mutations in Infant and Childhood KMT2A-rearranged Acute LeukemiaMattias Pilheden, Louise Ahlgren, Axel Hyrenius-Wittsten, V. Gonzalez-Pena, Helena Sturesson, Hanne Vibeke Hansen Marquart, B. Lausen, A. Castor, C. Pronk, G. Barbany et al. · 2022 · HemaSphere
- Uterine Lavage Identifies Cancer Mutations and Increased TP53 Somatic Mutation Burden in Individuals with Ovarian CancerT. Ghezelayagh, Brendan F. Kohrn, J. Fredrickson, Enna Manhardt, M. Radke, R. Katz, H. Gray, R. Urban, K. Pennington, J. Liao et al. · 2022 · Cancer Research Communications
- Single-strand specific nuclease enhances accuracy of error-corrected sequencing and improves rare mutation-detection sensitivityYuki Otsubo, S. Matsumura, Naohiro Ikeda, Masayuki Yamane · 2021 · Archives of Toxicology
- Pathways and signatures of mutagenesis at targeted DNA nicksYinbo Zhang, Luther J. Davis, N. Maizels · 2021 · bioRxiv
- The Feasibility of Patient-Specific Circulating Tumor DNA Monitoring throughout Multi-Modality Therapy for Locally Advanced Esophageal and Rectal Cancer: A Potential Biomarker for Early Detection of Subclinical DiseaseC. Boniface, C. Deig, C. Halsey, Taylor Kelley, Michael B. Heskett, Charles R. Jr Thomas, P. Spellman, N. Nabavizadeh · 2020 · Diagnostics
- Targeted Next Generation Sequencing to study insert stability in genetically modified plantsA. Boutigny, Audrey Barranger, C. de Boisséson, Y. Blanchard, M. Rolland · 2019 · Scientific Reports
- Transcription coupled repair deficiency protects against human mutagenesis and carcinogenesisJames E. Cleaver · 2017 · DNA repair
- Digital PCRG. Karlin-Neumann, F. Bizouarn · 2018 · Methods in Molecular Biology
- APPLICATION OF ERROR-CORRECTED SEQUENCING TECHNOLOGIES FOR IN VIVO REGULATORY MUTAGENICITY ASSESSMENTC. Yauk, Anthony M. Lynch, V. N. Dobrovolsky, Maik Schuler, S. Smith-Roe, Devon Fitzgerald, Jake Higgins, N. Honarvar, F. Le Curieux, S. Matsumura et al. · 2025 · Regulatory toxicology and pharmacology : RTP
- DNA mutagenesis driven by transcription factor competition with mismatch repairWei Zhu, Yu-Ning Zhang, Harshit Sahay, Hana Wasserman, Ariel Afek, Jonathan D. Williams, Samantha Shaltz, Caitlin V. Johnson, Kyle Pinheiro, David M. MacAlpine et al. · 2025 · Cell
- Somatic mutation and selection at epidemiological scaleA. Lawson, F. Abascal, P. Nicola, S. Lensing, A. Roberts, G. Kalantzis, A. Baez-Ortega, N. Brzozowska, J. El-sayed Moustafa, D. Vaitkute et al. · 2024 · medRxiv
- Frequencies and spectra of aflatoxin B1-induced mutations in liver genomes of NEIL1-deficient mice as revealed by duplex sequencingI. Minko, Michael M. Luzadder, Vladimir L. Vartanian, Sean P. M. Rice, Megan M. Nguyen, M. Sanchez-Contreras, Phu Van, Scott R. Kennedy, A. McCullough, R. Lloyd · 2024 · NAR molecular medicine
- Ultra-deep mutational landscape in chronic lymphocytic leukemia uncovers dynamics of resistance to targeted therapiesDavid W. Woolston, Nathan D. Lee, Mazyar S. Shadman, Elena S. Latorre-Esteves, Xin Ray Tee, Jeanne Fredrickson, Brendan F. Kohrn, Chaitra Shankar Ujjani, Ashley M. Eckel, Brian G. Till et al. · 2023 · Haematologica
- Peritoneal cell-free DNA as a sensitive biomarker for detection of peritoneal metastasis in colorectal cancer: a prospective diagnostic studyZixu Yuan, Wenle Chen, Duo Liu, Qiyuan Qin, William M. Grady, Alessandro Fichera, Huaiming Wang, Ting Hou, Chanhe Li, Chanhe Li et al. · 2023 · Clinical Epigenetics
- Applications of molecular barcode sequencing for the detection of low‐frequency variants in circulating tumour DNA from hepatocellular carcinomaH. Lee, Esl Kim, K. Cho, Hye Jung Park, Jieun Seo, Hyeonah Lee, Eunha Baek, Jong-Rak Choi, K. Han, Seung-Tae Lee et al. · 2022 · Liver international (Print)
- CarcSeq measurement of rat mammary cancer driver mutations and relation to spontaneous mammary neoplasia.Karen L. McKim, Meagan B. Myers, Kelly L. Harris, Bin-Sheng Gong, Joshua Xu, Barbara L. Parsons · 2021 · Toxicological Sciences
- Detecting Ultralow Frequency Mutation in Circulating Cell‐Free DNA of Early‐Stage Nonsmall Cell Lung Cancer Patients with Unique Molecular IdentifiersYang Yang, D. Zheng, Chun-Yan Wu, A. Lizaso, Junyi Ye, S. Chuai, J. Ni, Jian-Fang Xu, G. Jiang · 2019 · Small Methods
- Ultra-precise detection of mutations by droplet-based amplification of circularized DNAKaile Wang, Qin Ma, Lan Jiang, Shujuan Lai, Xuemei Lu, Yali Hou, Chung‐I Wu, Jue Ruan · 2016 · BMC Genomics
- Charting single-cell lineages with synthetic and natural barcodesAlejo Rodriguez-Fraticelli, Victoria Parreno · 2026 · Nature Reviews Genetics
- Long Term Exposure to Benzo[b]fluoranthene Does Not Induce Mutations in MutaMouse Male Germ Cells.Madison T. Stewart, Gu Zhou, D. LeBlanc, A. Dodge, M. Meier, Andrew Williams, Alexandra S. Long, P. White, C. Yauk, F. Marchetti · 2025 · Reproductive Toxicology
- Precise diagnosis and prognosis assessment of malignant lung nodules: a narrative reviewMiaomiao Wen, Qian Zheng, Xiaohong Ji, S. Xin, Yin-Xi Zhou, Yahui Tian, Zitong Wan, Jiao Zhang, Jie Yang, Yongfu Ma et al. · 2024 · Journal of Thoracic Disease
- Measurable residual disease (MRD)-testing in haematological cancers: A giant leap forward or sideways?Qiujin Shen, Xiaowen Gong, Yahui Feng, Yu Hu, Tiantian Wang, Wen Yan, Wei Zhang, Saibing Qi, R. Gale, Jun-Ren Chen · 2024 · Blood reviews
- Clinical applications of circulating tumor DNA in central nervous system lymphoma.A. Foerster, E. Lauer, F. Scherer · 2023 · Seminars in hematology (Print)
- In silico error correction improves cfDNA mutation callingChang Sik Kim, S. Mohan, Mahmood Ayub, D. Rothwell, C. Dive, G. Brady, C. Miller · 2018 · Bioinform.
- MUTE‐Seq: An Ultrasensitive Method for Detecting Low‐Frequency Mutations in cfDNA With Engineered Advanced‐Fidelity FnCas9Sunghyeok Ye, Jin‐Soo Kim, Myungshin Kim, Ki‐Yeon Kim, Yoon‐Ho Won, Taegun Park, Sungjae An, Haerin Jeong, Hee‐Joon Chung, In Seon Lee et al. · 2025 · Advanced Materials
- Technological and computational approaches to detect somatic mosaicism in epilepsyChristian M. Boßelmann, Costin Leu, Dennis Lal · 2023 · Neurobiology of Disease
- Characterization of leukemic resistance to CD19-targeted CAR T-cell therapy through deep genomic sequencingGregory M. Chen, Chia-Hui Chen, Jessica Perazzelli, S. Grupp, D. Barrett, Kai Tan · 2022 · Cancer immunology research
- svCapture: efficient and specific detection of very low frequency structural variant junctions by error-minimized capture sequencingThomas E. Wilson, Samreen I. Ahmed, Jake Higgins, Jesse J. Salk, Thomas W. Glover · 2022 · NAR Genomics and Bioinformatics
- SinoDuplex: An Improved Duplex Sequencing Approach to Detect Low-frequency Variants in Plasma cfDNA SamplesYongzhe Ren, Yang Zhang, Dandan Wang, Feng Liu, Ying Fu, Shaohua Xiang, Li Su, Jiancheng Li, H. Dai, Bingding Huang · 2020 · Genomics, Proteomics & Bioinformatics
- FERMI: A Novel Method for Sensitive Detection of Rare Mutations in Somatic TissueL. Liggett, Anchal Sharma, S. De, J. DeGregori · 2019 · G3: Genes, Genomes, Genetics
- Host association influences variation at salivary protein genes in the bat ectoparasite Cimex adjunctusBenoit Talbot, M. Vonhof, H. Broders, B. Fenton, N. Keyghobadi · 2018 · Journal of Evolutionary Biology
- Benchmarking of duplex sequencing approaches to reveal somatic mutation landscapesYang Zhang, Vinay Viswanadham, Michail Andreopoulos, D. Głodzik, Ruo-Lin Liu, Lovelace J. Luquette, Se-Young Jo, Azeet Narayan, Mu-Chun Niu, Lisa Anderson et al. · 2025 · bioRxiv
- Somatic mosaicism in the buccal mucosa reflects lifestyle and germline risk factors for esophageal squamous cell carcinomaAkira Yokoyama, Koichi Watanabe, Yoshikage Inoue, Tomonori Hirano, Masashi Tamaoki, Kenshiro Hirohashi, Shun Kawaguchi, Yoshihiro Ishida, Yasuhide Takeuchi, Yo Kishimoto et al. · 2025 · Science Translational Medicine
- Detection of ESR1 Mutations in Tissue and Liquid Biopsy with Novel Next-Generation Sequencing and Digital Droplet PCR Assays: Insights from Multi-Center Real Life Data of Almost 6000 PatientsS. Borkar, Fenja Markus, A. Oetting, Stefanie Schmidt, C. Vossing, D. Horst, Markus Möbs, Elena I. Braicu, F. Griesinger, Katja Horling et al. · 2025 · Cancers
- A maternal germline mutator phenotype in a family affected by heritable colorectal cancerCandice L. Young, A. Beichman, David Mas Ponte, Shelby L. Hemker, Luke Zhu, J. Kitzman, Brian Shirts, Kelley Harris · 2024 · Genetics
- On the patterns of genetic intra-tumor heterogeneity before and after treatmentAlexander Stein, Benjamin Werner · 2024 · bioRxiv
- Power analyses to inform Duplex Sequencing study designs for MutaMouse liver and bone marrowElena Esina, A. Dodge, A. Williams, D. Schuster, D. LeBlanc, Francesco Marchetti, C. Yauk · 2024 · Environmental and Molecular Mutagenesis
- Emerging genetic technologies informing personalized medicine in Shwachman-Diamond syndrome and other inherited BMF disordersAlyssa H. Cull, David G. Kent, Alan John Warren · 2024 · Blood
- Recent advances in biosensors and sequencing technologies for the detection of mutationsSerge Yannick Ouédraogo, Xi Zhou, Hanchun Chen, Fangzhi Chen, Changbei Ma · 2022 · Microchemical Journal
- Accurate Detection of Rare Mutant Alleles by Target Base-Specific Cleavage with the CRISPR/Cas9 SystemDongin Lee, Ji Hyun Lee, Duhee Bang · 2021 · ACS Synthetic Biology
- Tumor DNA as a Cancer Biomarker through the Lens of Colorectal NeoplasiaJoshua David Cohen, Brenda B. Diergaarde, Nickolas Papadopoulos, Kenneth W. Kinzler, Robert E. Schoen · 2020 · Cancer Epidemiology Biomarkers & Prevention
- Pathogenic postzygotic mosaicism in the tyrosine receptor kinase pathway: potential unidentified human disease hidden away in a few cellsIrene Tiemann-Boege, T. Mair, Atena Yasari, M. Žurovec · 2020 · The FEBS Journal
- AR-v7 liquid biopsy for treatment stratification in prostate cancer: how close are we?C. Fletcher · 2017 · Current Opinion in Urology
- Hematopoietic stem cells meet induced pluripotent stem cells technologyMariarosaria Esposito · 2016 · Haematologica
- The role of clinical genomic testing in diagnosis and discovery of pathogenic mutationsP. Nagy, M. Mansukhani · 2015 · Expert Review of Molecular Diagnostics
- Ultrasensitive Detection of Circulating Tumor DNA in Lymphoma via Targeted Hybridization Capture and Deep Sequencing of Barcoded Libraries.M. Alcaide, C. Rushton, Ryan D. Morin · 2019 · Methods in molecular biology
- Next-Generation Sequencing and Mutational Analysis: Implications for Genes Encoding LINC Complex ProteinsP. Nagy, H. Worman · 2018 · Methods in molecular biology
- Programmable Argonaute-mediated single-nucleotide variant sequencing of cell-free DNA for multi-cancer early detectionChong Guo, Jiongyu Zhang, Shuo Zhang, Jeong Moon, Rui Yang, Xin Guan, Chengyu Hou, Minjie Pei, Kurt T. Schalper, Daniel Schreiber et al. · 2025 · Nature Communications
- Transferability, Reproducibility and Sensitivity of Mutation Quantification by Duplex SequencingShaofei Zhang, Barbara L. Parsons, Devon Fitzgerald, Anne L. Ashford, J. Auman, Tao Chen, A. Dodge, A. Elhajouji, Lena Pfaller, S. Harris et al. · 2025 · Environmental and Molecular Mutagenesis
- Digital sequencing is improved by using structured unique molecular identifiersPeter Micallef, Manuel Luna Santamaría, Mandy Escobar, Daniel Andersson, T. Österlund, Pia Mouhanna, S. Filges, Gustav Johansson, H. Fagman, C. Vannas et al. · 2025 · Genome Biology
- Detection of clinically relevant variants in the TP53 gene below 10% allelic frequency: A multicenter study by ERIC, the European Research Initiative on CLLŠ. Pavlová, J. Malčíková, Lenka Radova, Silvia Bonfiglio, J. Cowland, C. Brieghel, M. K. Andersen, M. Karypidou, B. Biderman, M. Doubek et al. · 2025 · HemaSphere
- Increased TP53 somatic evolution in peritoneal washes of individuals with BRCA1 germline mutationsX. Tee, Emma Hazard, Elena Latorre-Esteves, Brendan F. Kohrn, T. Ghezelayagh, J. Fredrickson, CoohleenAnn Coombes, M. Radke, Enna Manhardt, Ronit Katz et al. · 2024 · Gynecologic Oncology
- Exploring FGFR3 Mutations in the Male Germline: Implications for Clonal Germline Expansions and Paternal Age-Related DysplasiasS. Moura, Ingrid Hartl, Veronika Brumovská, P. Calabrese, Atena Yasari, Yasmin Striedner, M. Bishara, T. Mair, Thomas Ebner, G. Schütz et al. · 2024 · Genome Biology and Evolution
- Rapid and Sensitive Detection of Fungicide-Resistant Crop Fungal Pathogens Using an Isothermal Amplification Refractory Mutation System.Sishuo Song, Fan Ji, Q. Zeng, Xiaoteng Ding, Jiahao Lin, Xin-Sheng Wang, Yuan-Hong Xu, Rui-Jie Deng, Jing-Hong Li · 2023 · Analytical Chemistry
- Detection of DNA replication errors and 8-oxo-dGTP-mediated mutations in E. coli by Duplex DNA SequencingNiketa Bhawsinghka, A. Burkholder, R. Schaaper · 2022 · bioRxiv
- Accurate Detection of Subclonal Variants in Paired Diagnosis-Relapse Acute Myeloid Leukemia Samples by Next Generation Duplex SequencingA. Kamath-Loeb, Jiang-Cheng Shen, Michael W. Schmitt, Brendan F. Kohrn, K. Loeb, E. Estey, Jin Dai, S. Chien, L. Loeb, P. Becker · 2022 · Leukemia research : a Forum for Studies on Leukemia and Normal Hemopoiesis
- A deep molecular response of splenic marginal zone lymphoma to front-line checkpoint blockadeP. Miller, A. Sperling, Christopher J. Gibson, O. Pozdnyakova, Wai-Hay J. Wong, Michael P. Manos, Elizabeth I. Buchbinder, F. Hodi, Benjamin L. Ebert, M. Davids · 2020 · Haematologica
- Mechanistic understanding of cellular responses to genomic stressPhilip C. Hanawalt, Joann Balazs Sweasy · 2019 · Environmental and Molecular Mutagenesis
- Peripheral biomarkers for pediatric brain tumors: current advancements and future challengesM. Bookland, A. Kolmakova · 2019 · Journal of Cancer Metastasis and Treatment
- Spatial Vulnerabilities of the Escherichia coli Genome to Spontaneous Mutations Revealed with Improved Duplex SequencingXiaolong Zhang, Xue-Hong Zhang, Xia Zhang, Yu-Wei Liao, Luyao Song, Qing-Zheng Zhang, Peiying Li, Jichao Tian, Yan-Yan Shao, A. AI-Dherasi et al. · 2018 · Genetics
- Genome Instability in DNA VirusesRafael Sanjuán, Marianoel Pereira-Gómez, Jennifer Risso-Ballester · 2016 · Elsevier eBooks
- Approach, Application, and Bioethics of mtDNA Sequencing in Cancer.Meng-Jia Qian, C. Spada, Xiang-Dong Wang · 2017 · Advances in Experimental Medicine and Biology
- Tumour promotion through the lens of evolutionNúria López-Bigas, Eve E. Kandyba, Abel González-Pérez, Paul Brennan, Allan Balmain · 2026 · Nature
- Duplex sequencing identifies unique characteristics of ENU-induced mutations in male mouse germ cellsD. LeBlanc, Gu Zhou, Andrew Williams, M. Meier, C. Valentine, J. Salk, C. Yauk, F. Marchetti · 2025 · Biology of Reproduction
- Optimising Exome Captures in Species With Large Genomes Using Species‐Specific Repetitive DNA BlockerRobert Kesälahti, T. Kumpula, Sandra Cervantes, S. Kujala, T. Mattila, J. Tyrmi, A. Niskanen, P. Rastas, Outi Savolainen, T. Pyhäjärvi · 2024 · Molecular Ecology Resources