The modern molecular clock

Bromham, Lindell, Penny, David·2003·Nature Reviews Genetics

Cited by (615)

Items 201–300 of 615

  1. Why mammalian lineages respond differently to sexual selection: metabolic rate constrains the evolution of sperm size
    Montserrat Gomendio, Maximiliano Tourmente, Eduardo R. S. Roldán · 2011 · Proceedings of the Royal Society B Biological Sciences
  2. Diagnosing duplications – can it be done?
    Dannie Durand, Rose Hoberman · 2006 · Trends in Genetics
  3. Podocarp Evolution: A Molecular Phylogenetic Perspective
    Ed Biffin, John Godfrey Conran, Andrew John Lowe · 2011 · Smithsonian contributions to botany
  4. Can Deleterious Mutations Explain the Time Dependency of Molecular Rate Estimates?
    Michael D. Woodhams · 2006 · Molecular Biology and Evolution
  5. Evolutionary Diversification of New Caledonian Araucaria
    Mai Lan Kranitz, Ed Biffin, Alexandra Clark, Michelle L. Hollingsworth, Markus Ruhsam, Martin Gardner, Philip Thomas, R. R. Mill, Richard A. Ennos, Myriam Gaudeul et al. · 2014 · PLoS ONE
  6. Biogeography Off the Tracks
    Jonathan M. Waters, Steven A. Trewick, Adrian M. Paterson, Hamish G. Spencer, Martyn Kennedy, Dave Craw, Christopher Paul Burridge, Graham P. Wallis · 2013 · Systematic Biology
  7. Genomic Analysis of the Emergence, Evolution, and Spread of Human Respiratory RNA Viruses
    Tommy Tsan‐Yuk Lam, Huachen Zhu, Yi Guan, Edward Charles Holmes · 2016 · Annual Review of Genomics and Human Genetics
  8. Molecular Evidence for the Ancient Origin of the Ribosomal Protection Protein That Mediates Tetracycline Resistance in Bacteria
    Takeshi Kobayashi, Lisa Nonaka, Fumito Maruyama, Satoru Suzuki · 2007 · Journal of Molecular Evolution
  9. Flanking regions of monomorphic microsatellite loci provide a new source of data for plant species-level phylogenetics
    Lars W. Chatrou, Pilar Escribano, M.A. Viruel, Jan W. Maas, James Edward Richardson, J.I. Hormaza · 2009 · Molecular Phylogenetics and Evolution
  10. Ecology has contrasting effects on genetic variation within species versus rates of molecular evolution across species in water beetles
    Tomochika Fujisawa, Alfried P. Vogler, Timothy G. Barraclough · 2014 · Proceedings of the Royal Society B Biological Sciences
  11. Recalibrating the molecular clock for Arctic marine invertebrates based on DNA barcodes
    Tzitziki Loeza‐Quintana, Christina M. Carr, Tooba Khan, Yash A. Bhatt, Samantha P. Lyon, Paul D. N. Hebert, Sarah J. Adamowicz · 2018 · Genome
  12. Primate Origins: Implications of a Cretaceous Ancestry
    Robert Denis Martin, Christophe Soligo, Simon Tavaré · 2007 · Folia Primatologica
  13. Molecular phylogenetic dating supports an ancient endemic speciation model in Australia’s biodiversity hotspot
    Matthew J. Morgan, J. Dale Roberts, J. Scott Keogh · 2006 · Molecular Phylogenetics and Evolution
  14. Dating Phylogenies with Hybrid Local Molecular Clocks
    Stéphane Aris‐Brosou · 2007 · PLoS ONE
  15. Late Mitochondrial Origin Is an Artifact
    Martin, William F., Roettger, Mayo, Ku, Chuan, Garg, Sriram G., Nelson-Sathi, Shijulal, Landan, Giddy · 2017 · Genome Biology and Evolution
  16. Genetic ages for Quaternary topographic evolution: A new dating tool
    Dave Craw, Christopher Paul Burridge, Richard J. Norris, Jonathan M. Waters · 2007 · Geology
  17. Genetic elucidation of cryptic and ancient diversity in a group of Australian diplodactyline geckos: The Diplodactylus vittatus complex
    Paul M. Oliver, Andrew F. Hugall, Mark Adams, Steven J. Cooper, Mark N. Hutchinson · 2007 · Molecular Phylogenetics and Evolution
  18. Revised Evolutionary and Taxonomic Synthesis for Parrots (Order: Psittaciformes) Guided by Phylogenomic Analysis
    Brian Tilston Smith, Gregory Thom, Leo Joseph · 2024 · Bulletin of the American Museum of Natural History
  19. A New Method for Estimating Species Age Supports the Coexistence of Malaria Parasites and Their Mammalian Hosts
    Joana Caldeira Fernandes da Silva, Amy Egan, Cesar Arze, John L. Spouge, David G. Harris · 2015 · Molecular Biology and Evolution
  20. A phylogenetic analysis of laughingthrushes (Timaliidae:Garrulax) and allies based on mitochondrial and nuclear DNA sequences
    Xu Luo, Yanhua Qu, Lian Xian Han, Shou-Hsien Li, Fu Lei · 2008 · Zoologica Scripta
  21. Phylogenomic branch length estimation using quartets
    Yasamin Tabatabaee, Chao Zhang, Tandy J. Warnow, Siavash Mirarab · 2023 · Bioinformatics
  22. Inverse relationship between longevity and evolutionary rate of mitochondrial proteins in mammals and birds
    Nicolas Galtier, Pierre Ulrich Blier, Benoît Nabholz · 2008 · Mitochondrion
  23. Lack of increases in methylation at three CpG-rich genomic loci in non-mitotic adult tissues during aging
    Michelle W Chu, Kimberly D. Siegmund, Carrie L Eckstam, Jung Yeon Kim, Allen S. Yang, Gary C. Kanel, Simon Tavaré, Darryl K. Shibata · 2007 · BMC Medical Genetics
  24. Estimating Cell Depth from Somatic Mutations
    Adam Wasserstrom, Dan Frumkin, Rivka Adar, Shalev Itzkovitz, Tomer Stern, Shai Kaplan, Gabi Shefer, Irena Shur, Lior Zangi, Yitzhak Reizel et al. · 2008 · PLoS Computational Biology
  25. Current genetic isolation and fragmentation contrasts with historical connectivity in an alpine lizard (Cyclodomorphus praealtus) threatened by climate change
    Tessa J. Koumoundouros, Joanna Sumner, Nick Clemann, Devi M Stuart-Fox · 2009 · Biological Conservation
  26. Reconciling Extreme Branch Length Differences: Decoupling Time and Rate through the Evolutionary History of Filmy Ferns
    Eric Schuettpelz, Kathleen M. Pryer · 2006 · Systematic Biology
  27. Dating the origin of the genus Flavivirus in the light of Beringian biogeography
    John H.‐O. Pettersson, Omar Fiz-Palacios · 2014 · Journal of General Virology
  28. Serotype-specific evolutionary patterns of antimicrobial-resistant Salmonella enterica
    Jingqiu Liao, Renato Hohl Orsi, Laura M. Carroll, Jasna Kovač, Hong‐Yu Ou, Hailong Zhang, Martin Wiedmann · 2019 · BMC Evolutionary Biology
  29. Model Selection and the Molecular Clock
    Oliver G. Pybus · 2006 · PLoS Biology
  30. Metabolic Rate and Climatic Fluctuations Shape Continental Wide Pattern of Genetic Divergence and Biodiversity in Fishes
    Julien April, Robert Hanner, Richard L. Mayden, Louis Bernatchez · 2013 · PLoS ONE
  31. Multilocus species trees and species delimitation in a temporal context: application to the water shrews of the genus Neomys
    Javier Igea, Pere Aymerich, Anna A. Bannikova, Joaquím Gosálbez, José Castresana · 2015 · BMC Evolutionary Biology
  32. Molecular Evolution of SARS-CoV-2 during the COVID-19 Pandemic
    Luis Daniel González-Vázquez, Miguel Arenas · 2023 · Genes
  33. 50,000 years of genetic uniformity in the critically endangered Iberian lynx
    RICARDO RODRÍGUEZ, Óscar Ramírez, Cristina E. Valdiosera, Nuria Garcı́a, Fernando Alda, Joan Madurell‐Malapeira, Josep Marmi, Ignacio Doadrio, Eske Willerslev, Anders Götherström et al. · 2011 · Molecular Ecology
  34. Molecular Clock: An Anti-neo-Darwinian Legacy
    Naoyuki Takahata · 2007 · Genetics
  35. Spread of an introduced vector‐borne banana virus in Hawaii
    Rodrigo P. P. Almeida, Gordon M. Bennett, MANDY D. ANHALT, Chi‐Wei Tsai, Patrick O’Grady · 2008 · Molecular Ecology
  36. How Fast Is the Sessile Ciona?
    Luisa Berná, Fernando Álvarez-Valín, Giuseppe D’Onofrio · 2009 · Comparative and Functional Genomics
  37. Rapid sperm evolution in the bluethroat (Luscinia svecica) subspecies complex
    Silje Hogner, Terje Laskemoen, Jan Terje Lifjeld, Václav Pavel, Bohumír Chutný, Javier García, Marie‐Christine Eybert, Ekaterina L. Matsyna, Arild Johnsen · 2013 · Behavioral Ecology and Sociobiology
  38. Molecular phylogeny and biogeography of the arctic‐alpine genus Lagotis (Plantaginaceae)
    Guodong Li, Changkyun Kim, Hong‐Guang Zha, Zhuo Zhou, Ze‐Long Nie, Hang Sun · 2014 · Taxon
  39. Molecular phylogeny and dating of an insular endemic moth radiation inferred from mitochondrial and nuclear genes: The genus Galagete (Lepidoptera: Autostichidae) of the Galapagos Islands
    Patrick Schmitz, Alice Cibois, Bernard Landry · 2007 · Molecular Phylogenetics and Evolution
  40. Comparative phylogeography of endemic cyprinids in the south‐west Iberian Peninsula: evidence for a new ichthyogeographic area
    Natacha Mesquita, C. Cunha, Gary Robert Carvalho, Maria M. Coelho · 2007 · Journal of Fish Biology
  41. BODY MASS AND TEMPERATURE INFLUENCE RATES OF MITOCHONDRIAL DNA EVOLUTION IN NORTH AMERICAN CYPRINID FISH
    George F. Estabrook, Gerald R. Smith, Thomas E. Dowling · 2007 · Evolution
  42. Reconsidering the generation time hypothesis based on nuclear ribosomal ITS sequence comparisons in annual and perennial angiosperms
    David F. Soria‐Hernanz, Omar Fiz-Palacios, John M. Braverman, Matthew B. Hamilton · 2008 · BMC Evolutionary Biology
  43. Phylogenomics indicates the “living fossil” Isoetes diversified in the Cenozoic
    Daniel P. Wood, Guillaume Besnard, David J. Beerling, Colin P. Osborne, Pascal‐Antoine Christin · 2020 · PLoS ONE
  44. Histories of molecules: Reconciling the past
    Maureen A. O’Malley · 2015 · Studies in History and Philosophy of Science Part A
  45. A Re-Evaluation of M. prototuberculosis
    Noel H. Smith · 2006 · PLoS Pathogens
  46. Phylogeography ofHomalothecium sericeum(Hedw.) Br. Eur.; toward a reconstruction of glacial survival and postglacial migration
    Terry A J Hedderson, Tracey L. Nowell · 2006 · Journal of Bryology
  47. Untangling Gloxinieae (Gesneriaceae). II. Reconstructing Biogeographic Patterns and Estimating Divergence Times Among New World Continental and Island Lineages
    Eric H. Roalson, Laurence E. Skog, Elizabeth A. Zimmer · 2008 · Systematic Botany
  48. Positive correlations between molecular and morphological rates of evolution
    Hervé Seligmann · 2010 · Journal of Theoretical Biology
  49. Reconstructing evolution at the community level: A case study on Mediterranean amphibians
    Sarah Ehl, Miguel Vences B, Michael Veith · 2019 · Molecular Phylogenetics and Evolution
  50. Explaining the Imperfection of the Molecular Clock of Hominid Mitochondria
    Eva‐Liis Loogväli, Toomas Kivisild, Tõnu Margus, Richard Villems · 2009 · PLoS ONE
  51. A Late Cretaceous Piper (Piperaceae) from Colombia and diversification patterns for the genus
    Camila Martínez, Mónica R. Carvalho, Santiago Madriñán, Carlos Alberto Jaramillo · 2015 · American Journal of Botany
  52. Consistency of genome‐based methods in measuring Metazoan evolution
    Evgeny M. Zdobnov, Christian von Mering, Ivica Letunić, Peer Bork · 2005 · FEBS Letters
  53. Recent evolutionary diversification of a protist lineage
    Ramiro Logares, Niels Daugbjerg, Andrés Boltovskoy, Anke Kremp, Johanna Laybourn‐Parry, Karin Rengefors · 2008 · Environmental Microbiology
  54. Mutation and epigenetic molecular clocks in cancer
    Darryl K. Shibata · 2010 · Carcinogenesis
  55. Divergence times in the termite genus Macrotermes (Isoptera: Termitidae)
    R. Brandl, Fujio Hyodo, M. von Korff-Schmising, Kiyoto Maekawa, Toru Miura, Yoko Takematsu, Tetsuro Matsumoto, Takuya Abe, Richard K. N. Bagine, Manfred Kaib · 2007 · Molecular Phylogenetics and Evolution
  56. River drainage reorientation during placer gold accumulation, southern New Zealand
    Dave Craw · 2013 · Mineralium Deposita
  57. SUBSTITUTION RATES AT NEUTRAL GENES DEPEND ON POPULATION SIZE UNDER FLUCTUATING DEMOGRAPHY AND OVERLAPPING GENERATIONS
    François Balloux, Laurent Lehmann · 2011 · Evolution
  58. Divergence and ranking of taxa across the kingdoms Animalia, Fungi and Plantae
    Milan C. Samarakoon · 2016 · Mycosphere
  59. Investigating undergraduate health sciences students’ acceptance of evolution using MATE and GAENE
    Kelsey J. Metzger, Darian Montplaisir, David E. Haines, Kyle Nickodem · 2018 · Evolution Education and Outreach
  60. A comprehensive approach uncovers hidden diversity in freshwater mussels (Bivalvia: Unionidae) with the description of a novel species
    Kentaro Inoue, John L. Harris, Clinton R. Robertson, Nathan A. Johnson, Charles R. Randklev · 2019 · Cladistics
  61. Correlating hydrographic events and divergence times of speckled dace (Rhinichthys: Teleostei: Cyprinidae) in the Colorado River drainage
    Gerald R. Smith, Thomas E. Dowling · 2008 · Geological Society of America eBooks
  62. Evolutionary rate variation among vertebrate β globin genes: Implications for dating gene family duplication events
    Gabriela Aguileta, Joseph P. Bielawski, Ziheng Yang · 2006 · Gene
  63. Using chromosomal data in the phylogenetic and molecular dating framework: karyotype evolution and diversification in Nierembergia (Solanaceae) influenced by historical changes in sea level
    María Cristina Acosta, Eduardo A. Moscone, Andrea Aristides Cocucci · 2015 · Plant Biology
  64. Tectonic controls on the evolution of the Clutha River catchment, New Zealand
    Dave Craw, Phædra Upton, Rachel C. Walcott, Christopher Paul Burridge, Jonathon Waters · 2012 · New Zealand Journal of Geology and Geophysics
  65. Stability along with Extreme Variability in Core Genome Evolution
    Yuri I. Wolf, Sagi Snir, Eugene V. Koonin · 2013 · Genome Biology and Evolution
  66. Phylogenetic relationships of Dalyat mirabilis Mateu, 2002, with a revised molecular phylogeny of ground beetles (Coleoptera, Carabidae)
    Ignacio Ribera, J. Mateu, Xavier Bellés · 2005 · Journal of Zoological Systematics & Evolutionary Research
  67. Circadian disruption and its impact on the cardiovascular system
    Morag J. Young, Seamus Heanue, Monica Kanki, Kegan James Moneghetti · 2024 · Trends in Endocrinology and Metabolism
  68. Mitochondrial phylogeography and cryptic divergence in the stickleback genusPungitius
    Cui Wang, Takahito Shikano, Henri Persat, Juha Merilä · 2015 · Journal of Biogeography
  69. Testing large‐scale conservation corridors designed for patterns and processes: comparative phylogeography of three tree species
    Alastair Potts, Terry A J Hedderson, Richard M. Cowling · 2013 · Diversity and Distributions
  70. Molecular Epidemiology of Foot-and-Mouth Disease Virus in the Context of Transboundary Animal Movement in the Far North Region of Cameroon
    Miranda R. Bertram, Carla Bravo de Rueda, Rebecca B. Garabed, Simon Dickmu Jumbo, Mark Moritz, Steven J. Pauszek, Souley Abdoulkadiri, Luis L. Rodrı́guez, Jonathan Arzt · 2018 · Frontiers in Veterinary Science
  71. Structural Phylogenomics Reveals Gradual Evolutionary Replacement of Abiotic Chemistries by Protein Enzymes in Purine Metabolism
    Kelsey Caetano-Anollés, Gustavo Caetano‐Anollés · 2013 · PLoS ONE
  72. Timing the extant avian radiation: The rise of modern birds, and the importance of modeling molecular rate variation
    Daniel J. Field, Jacob S. Berv, Allison Y. Hsiang, Robert Lanfear, Michael J. Landis, Alex Dornburg · 2019
  73. Changes in Selective Effects Over Time Facilitate Turnover of Enhancer Sequences
    Kevin Bullaughey · 2010 · Genetics
  74. An 18S and 28S-based clock calibration for marine Proseriata (Platyhelminthes)
    Fabio Scarpa, Piero Cossu, Daria Sanna, Tiziana Lai, Jon L. Norenburg, Marco C. Curini-Galletti, Marco Casu · 2014 · Journal of Experimental Marine Biology and Ecology
  75. Many Neglected Tropical Diseases May Have Originated in the Paleolithic or Before: New Insights from Genetics
    Gabriel A. Trueba, Micah Dunthorn · 2012 · PLoS neglected tropical diseases
  76. Evolving Perceptions on the Antiquity of the Modern Avian Tree
    Joseph W. Brown, Marcel van Tuinen · 2011 · Wiley eBooks
  77. Fossil-calibrated time tree of Podarcis wall lizards provides limited support for biogeographic calibration models
    Daniele Salvi, Catarina Pinho, Joana Mendes, David James Harris · 2021 · Molecular Phylogenetics and Evolution
  78. Dynamic New World: Refining Our View of Protein Structure, Function and Evolution
    Ranjan V. Mannige · 2014 · Proteomes
  79. Assignment of Calibration Information to Deeper Phylogenetic Nodes is More Effective in Obtaining Precise and Accurate Divergence Time Estimates
    Beatriz Mello, Carlos Guerra Schrago · 2014 · Evolutionary Bioinformatics
  80. Genetic Stability and Evolution of thesigBAllele, Used for Listeria Sensu Stricto Subtyping and Phylogenetic Inference
    Jingqiu Liao, Martin Wiedmann, Jasna Kovač · 2017 · Applied and Environmental Microbiology
  81. Identification of Y‐chromosome scaffolds of the Queensland fruit fly reveals a duplicated gyf gene paralogue common to many Bactrocera pest species
    Amanda Choo, Thu N. M. Nguyen, Christopher M. Ward, Isabel Y. Chen, J A Sved, Deborah C. A. Shearman, A. S. Gilchrist, Peter Crisp, Simon W. Baxter · 2019 · Insect Molecular Biology
  82. You are where you live: parasitic nematode mitochondrial genome size is associated with the thermal environment generated by hosts
    Malgorzata Lagisz, Robert Poulin, Shinichi Nakagawa · 2013 · Journal of Evolutionary Biology
  83. Systematics and Evolution of Australian Seagrasses in a Global Context
    Michelle Waycott, Ed Biffin, Donald H. Les · 2018 · Springer eBooks
  84. Comparative genomics of rice false smut fungi Ustilaginoidea virens Uv-Gvt strain from India reveals genetic diversity and phylogenetic divergence
    Devanna Pramesh, Muthukapalli K. Prasannakumar, K.M. Muniraju, Hirehally Basavarajegowda Mahesh, H. D. Pushpa, Channappa Manjunatha, Saddamhusen Alase, Eranna Chidanandappa, Manoj Kumar Yadav, Masalavada K. Kumara et al. · 2020 · 3 Biotech
  85. Taxonomy, Phylogeny, Divergence Time Estimation, and Biogeography of the Family Pseudoplagiostomataceae (Ascomycota, Diaporthales)
    Zhaoxue Zhang, Xinye Liu, Mengfei Tao, Xiaoyong Liu, Ji-Wen Xia, Xiu-Guo Zhang, Zhe Meng · 2023 · Journal of Fungi
  86. Evolutionary rates are correlated between cockroach symbionts and mitochondrial genomes
    Daej A. Arab, Thomas Bourguignon, Zongqing Wang, Simon Y. W. Ho, Nathan C. Lo · 2020 · Biology Letters
  87. Recombination, selection and clock-like evolution of Rice yellow mottle virus
    Agnès Pinel‐Galzi, Anatolia A. Mpunami, Emmanuel M. Sangu, Mbolarinosy Rakotomalala, Oumar Traoré, Drissa Sérémé, Fatogoma Sorho, Y. Séré, Zakaria L. Kanyeka, Gnissa Konaté et al. · 2009 · Virology
  88. Divergence dates of libelluloid dragonflies (Odonata: Anisoptera) estimated from rRNA using paired-site substitution models
    Jessica L. Ware, Simon Y. W. Ho, Karl M. Kjer · 2007 · Molecular Phylogenetics and Evolution
  89. Human hair genealogies and stem cell latency
    Jung Yeon Kim, Simon Tavaré, Darryl K. Shibata · 2006 · BMC Biology
  90. TIMING DEEP DIVERGENCE EVENTS IN CALCAREOUS DINOFLAGELLATES1
    Marc Gottschling, Susanne S. Renner, K J Sebastian Meier, Helmut Willems, Helmut Keupp · 2008 · Journal of Phycology
  91. DNA-based approaches for evaluating historical demography in terrestrial vertebrates
    Anna L. Fahey, Robert E. Ricklefs, J. Andrew DeWoody · 2014 · Biological Journal of the Linnean Society
  92. Felsenstein Phylogenetic Likelihood
    David Posada, Keith A. Crandall · 2021 · Journal of Molecular Evolution
  93. Estimation of divergence times for major lineages of galliform birds: Evidence from complete mitochondrial genome sequences
    Xianzhao Kan, Xifeng Li, Zu-Pei Lei, Lei Chen, Hui Gao, Zuyu Yang, Jianke Yang, Zhichun Guo, Lei Yu, Liqin Zhang et al. · 2010 · AFRICAN JOURNAL OF BIOTECHNOLOGY
  94. Dating Microbial Evolution with MCMCtree
    Mario dos Reis · 2022 · Methods in molecular biology
  95. Plio‐Pleistocene out‐of‐Australia dispersal in a camaenid land snail
    Frank Köhler, Francesco Criscione · 2013 · Journal of Biogeography
  96. Epistasis Increases the Rate of Conditionally Neutral Substitution in an Adapting Population
    Jeremy A. Draghi, Todd L. Parsons, Joshua B. Plotkin · 2011 · Genetics
  97. Universal Pacemaker of Genome Evolution in Animals and Fungi and Variation of Evolutionary Rates in Diverse Organisms
    Sagi Snir, Yuri I. Wolf, Eugene V. Koonin · 2014 · Genome Biology and Evolution
  98. Organelle DNA accumulation in the recently evolved papaya sex chromosomes
    Robert VanBuren, Ray Ming · 2013 · Molecular Genetics and Genomics
  99. Evidence for transcriptase quantum processing implies entanglement and decoherence of superposition proton states
    Willis Grant Cooper · 2009 · Biosystems
  100. Seed remains of common millet from the 4th (Mongolia) and 15th (Hungary) centuries: AFLP, SSR and mtDNA sequence recoveries
    Gábor Gyulai, Mervyn O. Humphreys, Richárd Lágler, Z. Szabo, Zoltán Tóth, András Bittsánszky, Ferenc Gyulai, L. Heszky · 2006 · Seed Science Research