The modern molecular clock
DOI 10.1038/nrg1020
Cited by (615)
Items 201–300 of 615
- Why mammalian lineages respond differently to sexual selection: metabolic rate constrains the evolution of sperm sizeMontserrat Gomendio, Maximiliano Tourmente, Eduardo R. S. Roldán · 2011 · Proceedings of the Royal Society B Biological Sciences
- Diagnosing duplications – can it be done?Dannie Durand, Rose Hoberman · 2006 · Trends in Genetics
- Podocarp Evolution: A Molecular Phylogenetic PerspectiveEd Biffin, John Godfrey Conran, Andrew John Lowe · 2011 · Smithsonian contributions to botany
- Can Deleterious Mutations Explain the Time Dependency of Molecular Rate Estimates?Michael D. Woodhams · 2006 · Molecular Biology and Evolution
- Evolutionary Diversification of New Caledonian AraucariaMai Lan Kranitz, Ed Biffin, Alexandra Clark, Michelle L. Hollingsworth, Markus Ruhsam, Martin Gardner, Philip Thomas, R. R. Mill, Richard A. Ennos, Myriam Gaudeul et al. · 2014 · PLoS ONE
- Biogeography Off the TracksJonathan M. Waters, Steven A. Trewick, Adrian M. Paterson, Hamish G. Spencer, Martyn Kennedy, Dave Craw, Christopher Paul Burridge, Graham P. Wallis · 2013 · Systematic Biology
- Genomic Analysis of the Emergence, Evolution, and Spread of Human Respiratory RNA VirusesTommy Tsan‐Yuk Lam, Huachen Zhu, Yi Guan, Edward Charles Holmes · 2016 · Annual Review of Genomics and Human Genetics
- Molecular Evidence for the Ancient Origin of the Ribosomal Protection Protein That Mediates Tetracycline Resistance in BacteriaTakeshi Kobayashi, Lisa Nonaka, Fumito Maruyama, Satoru Suzuki · 2007 · Journal of Molecular Evolution
- Flanking regions of monomorphic microsatellite loci provide a new source of data for plant species-level phylogeneticsLars W. Chatrou, Pilar Escribano, M.A. Viruel, Jan W. Maas, James Edward Richardson, J.I. Hormaza · 2009 · Molecular Phylogenetics and Evolution
- Ecology has contrasting effects on genetic variation within species versus rates of molecular evolution across species in water beetlesTomochika Fujisawa, Alfried P. Vogler, Timothy G. Barraclough · 2014 · Proceedings of the Royal Society B Biological Sciences
- Recalibrating the molecular clock for Arctic marine invertebrates based on DNA barcodesTzitziki Loeza‐Quintana, Christina M. Carr, Tooba Khan, Yash A. Bhatt, Samantha P. Lyon, Paul D. N. Hebert, Sarah J. Adamowicz · 2018 · Genome
- Primate Origins: Implications of a Cretaceous AncestryRobert Denis Martin, Christophe Soligo, Simon Tavaré · 2007 · Folia Primatologica
- Molecular phylogenetic dating supports an ancient endemic speciation model in Australia’s biodiversity hotspotMatthew J. Morgan, J. Dale Roberts, J. Scott Keogh · 2006 · Molecular Phylogenetics and Evolution
- Dating Phylogenies with Hybrid Local Molecular ClocksStéphane Aris‐Brosou · 2007 · PLoS ONE
- Late Mitochondrial Origin Is an ArtifactMartin, William F., Roettger, Mayo, Ku, Chuan, Garg, Sriram G., Nelson-Sathi, Shijulal, Landan, Giddy · 2017 · Genome Biology and Evolution
- Genetic ages for Quaternary topographic evolution: A new dating toolDave Craw, Christopher Paul Burridge, Richard J. Norris, Jonathan M. Waters · 2007 · Geology
- Genetic elucidation of cryptic and ancient diversity in a group of Australian diplodactyline geckos: The Diplodactylus vittatus complexPaul M. Oliver, Andrew F. Hugall, Mark Adams, Steven J. Cooper, Mark N. Hutchinson · 2007 · Molecular Phylogenetics and Evolution
- Revised Evolutionary and Taxonomic Synthesis for Parrots (Order: Psittaciformes) Guided by Phylogenomic AnalysisBrian Tilston Smith, Gregory Thom, Leo Joseph · 2024 · Bulletin of the American Museum of Natural History
- A New Method for Estimating Species Age Supports the Coexistence of Malaria Parasites and Their Mammalian HostsJoana Caldeira Fernandes da Silva, Amy Egan, Cesar Arze, John L. Spouge, David G. Harris · 2015 · Molecular Biology and Evolution
- A phylogenetic analysis of laughingthrushes (Timaliidae:Garrulax) and allies based on mitochondrial and nuclear DNA sequencesXu Luo, Yanhua Qu, Lian Xian Han, Shou-Hsien Li, Fu Lei · 2008 · Zoologica Scripta
- Phylogenomic branch length estimation using quartetsYasamin Tabatabaee, Chao Zhang, Tandy J. Warnow, Siavash Mirarab · 2023 · Bioinformatics
- Inverse relationship between longevity and evolutionary rate of mitochondrial proteins in mammals and birdsNicolas Galtier, Pierre Ulrich Blier, Benoît Nabholz · 2008 · Mitochondrion
- Lack of increases in methylation at three CpG-rich genomic loci in non-mitotic adult tissues during agingMichelle W Chu, Kimberly D. Siegmund, Carrie L Eckstam, Jung Yeon Kim, Allen S. Yang, Gary C. Kanel, Simon Tavaré, Darryl K. Shibata · 2007 · BMC Medical Genetics
- Estimating Cell Depth from Somatic MutationsAdam Wasserstrom, Dan Frumkin, Rivka Adar, Shalev Itzkovitz, Tomer Stern, Shai Kaplan, Gabi Shefer, Irena Shur, Lior Zangi, Yitzhak Reizel et al. · 2008 · PLoS Computational Biology
- Current genetic isolation and fragmentation contrasts with historical connectivity in an alpine lizard (Cyclodomorphus praealtus) threatened by climate changeTessa J. Koumoundouros, Joanna Sumner, Nick Clemann, Devi M Stuart-Fox · 2009 · Biological Conservation
- Reconciling Extreme Branch Length Differences: Decoupling Time and Rate through the Evolutionary History of Filmy FernsEric Schuettpelz, Kathleen M. Pryer · 2006 · Systematic Biology
- Dating the origin of the genus Flavivirus in the light of Beringian biogeographyJohn H.‐O. Pettersson, Omar Fiz-Palacios · 2014 · Journal of General Virology
- Serotype-specific evolutionary patterns of antimicrobial-resistant Salmonella entericaJingqiu Liao, Renato Hohl Orsi, Laura M. Carroll, Jasna Kovač, Hong‐Yu Ou, Hailong Zhang, Martin Wiedmann · 2019 · BMC Evolutionary Biology
- Model Selection and the Molecular ClockOliver G. Pybus · 2006 · PLoS Biology
- Metabolic Rate and Climatic Fluctuations Shape Continental Wide Pattern of Genetic Divergence and Biodiversity in FishesJulien April, Robert Hanner, Richard L. Mayden, Louis Bernatchez · 2013 · PLoS ONE
- Multilocus species trees and species delimitation in a temporal context: application to the water shrews of the genus NeomysJavier Igea, Pere Aymerich, Anna A. Bannikova, Joaquím Gosálbez, José Castresana · 2015 · BMC Evolutionary Biology
- Molecular Evolution of SARS-CoV-2 during the COVID-19 PandemicLuis Daniel González-Vázquez, Miguel Arenas · 2023 · Genes
- 50,000 years of genetic uniformity in the critically endangered Iberian lynxRICARDO RODRÍGUEZ, Óscar Ramírez, Cristina E. Valdiosera, Nuria Garcı́a, Fernando Alda, Joan Madurell‐Malapeira, Josep Marmi, Ignacio Doadrio, Eske Willerslev, Anders Götherström et al. · 2011 · Molecular Ecology
- Molecular Clock: An Anti-neo-Darwinian LegacyNaoyuki Takahata · 2007 · Genetics
- Spread of an introduced vector‐borne banana virus in HawaiiRodrigo P. P. Almeida, Gordon M. Bennett, MANDY D. ANHALT, Chi‐Wei Tsai, Patrick O’Grady · 2008 · Molecular Ecology
- How Fast Is the Sessile Ciona?Luisa Berná, Fernando Álvarez-Valín, Giuseppe D’Onofrio · 2009 · Comparative and Functional Genomics
- Rapid sperm evolution in the bluethroat (Luscinia svecica) subspecies complexSilje Hogner, Terje Laskemoen, Jan Terje Lifjeld, Václav Pavel, Bohumír Chutný, Javier García, Marie‐Christine Eybert, Ekaterina L. Matsyna, Arild Johnsen · 2013 · Behavioral Ecology and Sociobiology
- Molecular phylogeny and biogeography of the arctic‐alpine genus Lagotis (Plantaginaceae)Guodong Li, Changkyun Kim, Hong‐Guang Zha, Zhuo Zhou, Ze‐Long Nie, Hang Sun · 2014 · Taxon
- Molecular phylogeny and dating of an insular endemic moth radiation inferred from mitochondrial and nuclear genes: The genus Galagete (Lepidoptera: Autostichidae) of the Galapagos IslandsPatrick Schmitz, Alice Cibois, Bernard Landry · 2007 · Molecular Phylogenetics and Evolution
- Comparative phylogeography of endemic cyprinids in the south‐west Iberian Peninsula: evidence for a new ichthyogeographic areaNatacha Mesquita, C. Cunha, Gary Robert Carvalho, Maria M. Coelho · 2007 · Journal of Fish Biology
- BODY MASS AND TEMPERATURE INFLUENCE RATES OF MITOCHONDRIAL DNA EVOLUTION IN NORTH AMERICAN CYPRINID FISHGeorge F. Estabrook, Gerald R. Smith, Thomas E. Dowling · 2007 · Evolution
- Reconsidering the generation time hypothesis based on nuclear ribosomal ITS sequence comparisons in annual and perennial angiospermsDavid F. Soria‐Hernanz, Omar Fiz-Palacios, John M. Braverman, Matthew B. Hamilton · 2008 · BMC Evolutionary Biology
- Phylogenomics indicates the “living fossil” Isoetes diversified in the CenozoicDaniel P. Wood, Guillaume Besnard, David J. Beerling, Colin P. Osborne, Pascal‐Antoine Christin · 2020 · PLoS ONE
- Histories of molecules: Reconciling the pastMaureen A. O’Malley · 2015 · Studies in History and Philosophy of Science Part A
- A Re-Evaluation of M. prototuberculosisNoel H. Smith · 2006 · PLoS Pathogens
- Phylogeography ofHomalothecium sericeum(Hedw.) Br. Eur.; toward a reconstruction of glacial survival and postglacial migrationTerry A J Hedderson, Tracey L. Nowell · 2006 · Journal of Bryology
- Untangling Gloxinieae (Gesneriaceae). II. Reconstructing Biogeographic Patterns and Estimating Divergence Times Among New World Continental and Island LineagesEric H. Roalson, Laurence E. Skog, Elizabeth A. Zimmer · 2008 · Systematic Botany
- Positive correlations between molecular and morphological rates of evolutionHervé Seligmann · 2010 · Journal of Theoretical Biology
- Reconstructing evolution at the community level: A case study on Mediterranean amphibiansSarah Ehl, Miguel Vences B, Michael Veith · 2019 · Molecular Phylogenetics and Evolution
- Explaining the Imperfection of the Molecular Clock of Hominid MitochondriaEva‐Liis Loogväli, Toomas Kivisild, Tõnu Margus, Richard Villems · 2009 · PLoS ONE
- A Late Cretaceous Piper (Piperaceae) from Colombia and diversification patterns for the genusCamila Martínez, Mónica R. Carvalho, Santiago Madriñán, Carlos Alberto Jaramillo · 2015 · American Journal of Botany
- Consistency of genome‐based methods in measuring Metazoan evolutionEvgeny M. Zdobnov, Christian von Mering, Ivica Letunić, Peer Bork · 2005 · FEBS Letters
- Recent evolutionary diversification of a protist lineageRamiro Logares, Niels Daugbjerg, Andrés Boltovskoy, Anke Kremp, Johanna Laybourn‐Parry, Karin Rengefors · 2008 · Environmental Microbiology
- Mutation and epigenetic molecular clocks in cancerDarryl K. Shibata · 2010 · Carcinogenesis
- Divergence times in the termite genus Macrotermes (Isoptera: Termitidae)R. Brandl, Fujio Hyodo, M. von Korff-Schmising, Kiyoto Maekawa, Toru Miura, Yoko Takematsu, Tetsuro Matsumoto, Takuya Abe, Richard K. N. Bagine, Manfred Kaib · 2007 · Molecular Phylogenetics and Evolution
- River drainage reorientation during placer gold accumulation, southern New ZealandDave Craw · 2013 · Mineralium Deposita
- SUBSTITUTION RATES AT NEUTRAL GENES DEPEND ON POPULATION SIZE UNDER FLUCTUATING DEMOGRAPHY AND OVERLAPPING GENERATIONSFrançois Balloux, Laurent Lehmann · 2011 · Evolution
- Divergence and ranking of taxa across the kingdoms Animalia, Fungi and PlantaeMilan C. Samarakoon · 2016 · Mycosphere
- Investigating undergraduate health sciences students’ acceptance of evolution using MATE and GAENEKelsey J. Metzger, Darian Montplaisir, David E. Haines, Kyle Nickodem · 2018 · Evolution Education and Outreach
- A comprehensive approach uncovers hidden diversity in freshwater mussels (Bivalvia: Unionidae) with the description of a novel speciesKentaro Inoue, John L. Harris, Clinton R. Robertson, Nathan A. Johnson, Charles R. Randklev · 2019 · Cladistics
- Correlating hydrographic events and divergence times of speckled dace (Rhinichthys: Teleostei: Cyprinidae) in the Colorado River drainageGerald R. Smith, Thomas E. Dowling · 2008 · Geological Society of America eBooks
- Evolutionary rate variation among vertebrate β globin genes: Implications for dating gene family duplication eventsGabriela Aguileta, Joseph P. Bielawski, Ziheng Yang · 2006 · Gene
- Using chromosomal data in the phylogenetic and molecular dating framework: karyotype evolution and diversification in Nierembergia (Solanaceae) influenced by historical changes in sea levelMaría Cristina Acosta, Eduardo A. Moscone, Andrea Aristides Cocucci · 2015 · Plant Biology
- Tectonic controls on the evolution of the Clutha River catchment, New ZealandDave Craw, Phædra Upton, Rachel C. Walcott, Christopher Paul Burridge, Jonathon Waters · 2012 · New Zealand Journal of Geology and Geophysics
- Stability along with Extreme Variability in Core Genome EvolutionYuri I. Wolf, Sagi Snir, Eugene V. Koonin · 2013 · Genome Biology and Evolution
- Phylogenetic relationships of Dalyat mirabilis Mateu, 2002, with a revised molecular phylogeny of ground beetles (Coleoptera, Carabidae)Ignacio Ribera, J. Mateu, Xavier Bellés · 2005 · Journal of Zoological Systematics & Evolutionary Research
- Circadian disruption and its impact on the cardiovascular systemMorag J. Young, Seamus Heanue, Monica Kanki, Kegan James Moneghetti · 2024 · Trends in Endocrinology and Metabolism
- Mitochondrial phylogeography and cryptic divergence in the stickleback genusPungitiusCui Wang, Takahito Shikano, Henri Persat, Juha Merilä · 2015 · Journal of Biogeography
- Testing large‐scale conservation corridors designed for patterns and processes: comparative phylogeography of three tree speciesAlastair Potts, Terry A J Hedderson, Richard M. Cowling · 2013 · Diversity and Distributions
- Molecular Epidemiology of Foot-and-Mouth Disease Virus in the Context of Transboundary Animal Movement in the Far North Region of CameroonMiranda R. Bertram, Carla Bravo de Rueda, Rebecca B. Garabed, Simon Dickmu Jumbo, Mark Moritz, Steven J. Pauszek, Souley Abdoulkadiri, Luis L. Rodrı́guez, Jonathan Arzt · 2018 · Frontiers in Veterinary Science
- Structural Phylogenomics Reveals Gradual Evolutionary Replacement of Abiotic Chemistries by Protein Enzymes in Purine MetabolismKelsey Caetano-Anollés, Gustavo Caetano‐Anollés · 2013 · PLoS ONE
- Timing the extant avian radiation: The rise of modern birds, and the importance of modeling molecular rate variationDaniel J. Field, Jacob S. Berv, Allison Y. Hsiang, Robert Lanfear, Michael J. Landis, Alex Dornburg · 2019
- Changes in Selective Effects Over Time Facilitate Turnover of Enhancer SequencesKevin Bullaughey · 2010 · Genetics
- An 18S and 28S-based clock calibration for marine Proseriata (Platyhelminthes)Fabio Scarpa, Piero Cossu, Daria Sanna, Tiziana Lai, Jon L. Norenburg, Marco C. Curini-Galletti, Marco Casu · 2014 · Journal of Experimental Marine Biology and Ecology
- Many Neglected Tropical Diseases May Have Originated in the Paleolithic or Before: New Insights from GeneticsGabriel A. Trueba, Micah Dunthorn · 2012 · PLoS neglected tropical diseases
- Evolving Perceptions on the Antiquity of the Modern Avian TreeJoseph W. Brown, Marcel van Tuinen · 2011 · Wiley eBooks
- Fossil-calibrated time tree of Podarcis wall lizards provides limited support for biogeographic calibration modelsDaniele Salvi, Catarina Pinho, Joana Mendes, David James Harris · 2021 · Molecular Phylogenetics and Evolution
- Dynamic New World: Refining Our View of Protein Structure, Function and EvolutionRanjan V. Mannige · 2014 · Proteomes
- Assignment of Calibration Information to Deeper Phylogenetic Nodes is More Effective in Obtaining Precise and Accurate Divergence Time EstimatesBeatriz Mello, Carlos Guerra Schrago · 2014 · Evolutionary Bioinformatics
- Genetic Stability and Evolution of thesigBAllele, Used for Listeria Sensu Stricto Subtyping and Phylogenetic InferenceJingqiu Liao, Martin Wiedmann, Jasna Kovač · 2017 · Applied and Environmental Microbiology
- Identification of Y‐chromosome scaffolds of the Queensland fruit fly reveals a duplicated gyf gene paralogue common to many Bactrocera pest speciesAmanda Choo, Thu N. M. Nguyen, Christopher M. Ward, Isabel Y. Chen, J A Sved, Deborah C. A. Shearman, A. S. Gilchrist, Peter Crisp, Simon W. Baxter · 2019 · Insect Molecular Biology
- You are where you live: parasitic nematode mitochondrial genome size is associated with the thermal environment generated by hostsMalgorzata Lagisz, Robert Poulin, Shinichi Nakagawa · 2013 · Journal of Evolutionary Biology
- Systematics and Evolution of Australian Seagrasses in a Global ContextMichelle Waycott, Ed Biffin, Donald H. Les · 2018 · Springer eBooks
- Comparative genomics of rice false smut fungi Ustilaginoidea virens Uv-Gvt strain from India reveals genetic diversity and phylogenetic divergenceDevanna Pramesh, Muthukapalli K. Prasannakumar, K.M. Muniraju, Hirehally Basavarajegowda Mahesh, H. D. Pushpa, Channappa Manjunatha, Saddamhusen Alase, Eranna Chidanandappa, Manoj Kumar Yadav, Masalavada K. Kumara et al. · 2020 · 3 Biotech
- Taxonomy, Phylogeny, Divergence Time Estimation, and Biogeography of the Family Pseudoplagiostomataceae (Ascomycota, Diaporthales)Zhaoxue Zhang, Xinye Liu, Mengfei Tao, Xiaoyong Liu, Ji-Wen Xia, Xiu-Guo Zhang, Zhe Meng · 2023 · Journal of Fungi
- Evolutionary rates are correlated between cockroach symbionts and mitochondrial genomesDaej A. Arab, Thomas Bourguignon, Zongqing Wang, Simon Y. W. Ho, Nathan C. Lo · 2020 · Biology Letters
- Recombination, selection and clock-like evolution of Rice yellow mottle virusAgnès Pinel‐Galzi, Anatolia A. Mpunami, Emmanuel M. Sangu, Mbolarinosy Rakotomalala, Oumar Traoré, Drissa Sérémé, Fatogoma Sorho, Y. Séré, Zakaria L. Kanyeka, Gnissa Konaté et al. · 2009 · Virology
- Divergence dates of libelluloid dragonflies (Odonata: Anisoptera) estimated from rRNA using paired-site substitution modelsJessica L. Ware, Simon Y. W. Ho, Karl M. Kjer · 2007 · Molecular Phylogenetics and Evolution
- Human hair genealogies and stem cell latencyJung Yeon Kim, Simon Tavaré, Darryl K. Shibata · 2006 · BMC Biology
- TIMING DEEP DIVERGENCE EVENTS IN CALCAREOUS DINOFLAGELLATES1Marc Gottschling, Susanne S. Renner, K J Sebastian Meier, Helmut Willems, Helmut Keupp · 2008 · Journal of Phycology
- DNA-based approaches for evaluating historical demography in terrestrial vertebratesAnna L. Fahey, Robert E. Ricklefs, J. Andrew DeWoody · 2014 · Biological Journal of the Linnean Society
- Felsenstein Phylogenetic LikelihoodDavid Posada, Keith A. Crandall · 2021 · Journal of Molecular Evolution
- Estimation of divergence times for major lineages of galliform birds: Evidence from complete mitochondrial genome sequencesXianzhao Kan, Xifeng Li, Zu-Pei Lei, Lei Chen, Hui Gao, Zuyu Yang, Jianke Yang, Zhichun Guo, Lei Yu, Liqin Zhang et al. · 2010 · AFRICAN JOURNAL OF BIOTECHNOLOGY
- Dating Microbial Evolution with MCMCtreeMario dos Reis · 2022 · Methods in molecular biology
- Plio‐Pleistocene out‐of‐Australia dispersal in a camaenid land snailFrank Köhler, Francesco Criscione · 2013 · Journal of Biogeography
- Epistasis Increases the Rate of Conditionally Neutral Substitution in an Adapting PopulationJeremy A. Draghi, Todd L. Parsons, Joshua B. Plotkin · 2011 · Genetics
- Universal Pacemaker of Genome Evolution in Animals and Fungi and Variation of Evolutionary Rates in Diverse OrganismsSagi Snir, Yuri I. Wolf, Eugene V. Koonin · 2014 · Genome Biology and Evolution
- Organelle DNA accumulation in the recently evolved papaya sex chromosomesRobert VanBuren, Ray Ming · 2013 · Molecular Genetics and Genomics
- Evidence for transcriptase quantum processing implies entanglement and decoherence of superposition proton statesWillis Grant Cooper · 2009 · Biosystems
- Seed remains of common millet from the 4th (Mongolia) and 15th (Hungary) centuries: AFLP, SSR and mtDNA sequence recoveriesGábor Gyulai, Mervyn O. Humphreys, Richárd Lágler, Z. Szabo, Zoltán Tóth, András Bittsánszky, Ferenc Gyulai, L. Heszky · 2006 · Seed Science Research