The DOI matches its Crossref record; 95 of the 95 references it cites were found in a registry or an index.
Literature mining for the biologist: from information retrieval to biological discovery
Overview
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Self-check
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Citations
Cites
Assessing the accuracy of prediction algorithms for classification: an overview
Baldi, P., Brunak, S., Chauvin, Y., Andersen, C. A. F., & Nielsen, H. (2000) · Bioinformatics · doi:10.1093/bioinformatics/16.5.412 · Cited by 2,111
Coauthorship networks and patterns of scientific collaboration
Newman, M. E. J. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0307545100 · Cited by 1,931
von Mering, C. (2004) · Nucleic Acids Research · doi:10.1093/nar/gki005 · Cited by 1,764
Hearst, M. A. (1999) · Proceedings of the 37th annual meeting of the Association for Computational Linguistics on Computational Linguistics - · doi:10.3115/1034678.1034679 · Cited by 867
Fish Oil, Raynaud's Syndrome, and Undiscovered Public Knowledge
Swanson, D. R. (1986) · Perspectives in Biology and Medicine · doi:10.1353/pbm.1986.0087 · Cited by 866
A literature network of human genes for high-throughput analysis of gene expression
Jenssen, T.-K., Lægreid, A., Komorowski, J., & Hovig, E. J. (2001) · Nature Genetics · doi:10.1038/88213 · Cited by 839
Textpresso: An Ontology-Based Information Retrieval and Extraction System for Biological Literature
Müller, H.-M., Kenny, E. E., & Sternberg, P. W. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020309 · Cited by 653
Constructing biological knowledge bases by extracting information from text sources.
Craven, M. W., & Kumlien, J. (1999) · PubMed · Cited by 582
GoPubMed: exploring PubMed with the Gene Ontology
Doms, A., & Schroeder, M. (2005) · Nucleic Acids Research · doi:10.1093/nar/gki470 · Cited by 549
A gene network for navigating the literature
Hoffmann, R., & Valencia, A. (2004) · Nature Genetics · doi:10.1038/ng0704-664 · Cited by 535
Cited by
miRBase: integrating microRNA annotation and deep-sequencing data
Kozomara, A., & Griffiths-Jones, S. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkq1027 · Cited by 3,634
SuperTarget and Matador: resources for exploring drug-target relationships
Gunther, S., Kuhn, M., Dunkel, M., Campillos, M., Senger, C., Petsalaki, E., Ahmed, J., Urdiales, E. G., Gewiess, A., Jensen, L. J., et al. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm862 · Cited by 647
“In parallel, potential drug-target relations were automatically extracted from Medline by searching for synonyms of drugs, proteins and Medical Subject Headings (MeSH terms) describing groups of proteins (7).”
MethodSelf-citationDISEASES: Text mining and data integration of disease–gene associations
Pletscher-Frankild, S., Pallejà, A., Tsafou, K., Binder, J. X., & Jensen, L. J. (2015) · Methods · doi:10.1016/j.ymeth.2014.11.020 · Cited by 591
Self-citationKell, D. B. (2009) · BMC Medical Genomics · doi:10.1186/1755-8794-2-2 · Cited by 554
Rules for Modeling Signal-Transduction Systems
Hlavacek, W. S., Faeder, J. R., Blinov, M. L., Posner, R. G., Hucka, M., & Fontana, W. (2006) · Science's STKE · doi:10.1126/stke.3442006re6 · Cited by 350
Metadata
- Authors
- Jensen, L. J., Saric, J., & Bork, P.
- Venue
- Nature Reviews Genetics
- Published
- 2006-02
- Volume
- 7
- Issue
- 2
- Pages
- 119-129
- ISSN
- 1471-0056 (ISSN-L)
- 1471-0064
- OpenAlex
- W1994306321
- Cited by
- 631
- References
- 95
- FWCI
- 3.46
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Literature mining for the biologist: from information retrieval to biological discovery. https://app.cochat.ai/papers/10.1038/nrg1768
- The paper
- Jensen, L. J., Saric, J., & Bork, P. (2006). Literature mining for the biologist: from information retrieval to biological discovery. Nature Reviews Genetics. https://doi.org/10.1038/nrg1768
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
