Computational solutions to large‐scale data management and analysis

Cited by (631)

Items 201–300 of 631

1. BRISK—research-oriented storage kit for biology-related data
   Alan K. X. Tan, Ben W. Tripp, Denise Daley · 2011 · Bioinformatics
2. Design and Construction of a Big Data Analytics Framework for Health Applications
   Mu-Hsing Kuo, Dillon Chrimes, Belaid Moa, Wei Ping Hu · 2015 · IEEE International Conference on Smart City/SocialCom/SustainCom
3. Organellar Omics—A Reviving Strategy to Untangle the Biomolecular Complexity of the Cell
   Arun Kumar Tharkeshwar, Kris Gevaert, Wim G. Annaert · 2017 · PROTEOMICS
4. Automated near real-time monitoring in ecology: Status quo and ways forward
   Anna M. Davison, Koen de Koning, Franziska Taubert, Jan-Kees Schakel · 2025 · Ecological Informatics
5. A Proposed Brain-, Spine-, and Mental- Health Screening Methodology (NEUROSCREEN) for Healthcare Systems: Position of the Society for Brain Mapping and Therapeutics
   Mohammad Nami, Robert W. Thatcher, Nasser H. Kashou, Dahabada Lopes, Maria Lobo, Joe F. Bolanos, Kevin Morris, Melody Sadri, Teshia Bustos, Gilberto E. Sanchez et al. · 2022 · Journal of Alzheimer s Disease
6. Recursive Genome Function of the Cerebellum: Geometric Unification of Neuroscience and Genomics
   A. Pellionisz, Roy Graham, Peter A. Pellionisz, Jean-Claude Perez · 2012 · Springer eBooks
7. Review of Developments in Electronic, Clinical Data Collection, and Documentation Systems over the Last Decade – Are We Ready for Big Data in Routine Health Care?
   Kerstin Anne Kessel, Stephanie Elisabeth Combs · 2016 · Frontiers in Oncology
8. Landscape of Actionable Genetic Alterations Profiled from 1,071 Tumor Samples in Korean Cancer Patients
   Se‐Hoon Lee, Boram Lee, Joonho Shim, Kwang Woo Lee, Jae Won Yun, Sook-Young Kim, Tae‐You Kim, Yeul Hong Kim, Young Hyeh Ko, Hyun Cheol Chung et al. · 2018 · Cancer Research and Treatment
9. Budgeted Data Caching based on k-Median in Mobile Edge Computing
   Xiaoyu Xia, Feifei Chen, Guangming Cui, Mohamed Abdelrazek, John Grundy, Hai Jin, Qiang He · 2020 · IEEE International Conference on Web Services (ICWS)
10. Semantic Web technologies for the big data in life sciences
    Hongyan Wu, Atsuko Yamaguchi · 2014 · BioScience Trends
11. A review of MXene memristors and their applications
    Mrinal Kanti Hota, Sebastian Matias Pazos, Mario Lanza, Husam Niman Alshareef · 2025 · Materials Science and Engineering R Reports
12. KNODWAT: A scientific framework application for testing knowledge discovery methods for the biomedical domain
    Andreas Holzinger, Mario Zupan · 2013 · BMC Bioinformatics
13. Low-rank constraint based dual projections learning for dimensionality reduction
    Lin Cheng Jiang, Xiaozhao Fang, Weijun Sun, Na Han, Shaohua Teng · 2022 · Signal Processing
14. Deep-trap persistent materials for future rewriteable optical information storage
    Chaoyang Jia, Jia Yu, Yuanyuan Hu, Xiaojun Wang, Dangli Gao · 2024 · Physical Chemistry Chemical Physics
15. Clinical implementation of next-generation sequencing testing and genomically-matched therapy: a real-world data in a tertiary hospital
    Jin Won Kim, Hee Young Na, Sejoon Lee, Ji‐Won Kim, Koung Jin Suh, Se Hyun Kim, Jaihwan Kim, Keun‐Wook Lee, Jong Seok Lee, Chae‐Yong Kim et al. · 2025 · Scientific Reports
16. Expanding roles in a library-based bioinformatics service program: a case study
    Meng Li, Yi-Bu Chen, William A. Clintworth · 2013 · Journal of the Medical Library Association JMLA
17. High-Performance and Energy-Efficient Network-on-Chip Architectures for Graph Analytics
    Karthi Duraisamy, Hao Lu, Partha Pratim Pande, Ananth Kalyanaraman · 2016 · ACM Transactions on Embedded Computing Systems
18. The Power of Boolean Implication Networks
    Debashis Sahoo · 2012 · Frontiers in Physiology
19. Applying computation biology and “big data” to develop multiplex diagnostics for complex chronic diseases such as osteoarthritis
    Guomin Ren, Roman J. Krawetz · 2015 · Biomarkers
20. Generative and Predictive AI for digital twin systems in manufacturing
    Dan Dai, Baixiang Zhao, Zhiwen Yu, Pasquale Franciosa, Dariusz J. Ceglarek · 2025 · Frontiers in Artificial Intelligence
21. Enabling Large-Scale Biomedical Analysis in the Cloud
    Ying-Chih Lin, Chin‐Sheng Yu, Yen-Jen Lin · 2013 · BioMed Research International
22. Impact of Soft Errors on Large-Scale FPGA Cloud Computing
    Andrew M. Keller, Michael Wirthlin · 2019 · ACM/SIGDA International Symposium on Field-Programmable Gate Arrays (FPGA)
23. A smart reporting framework as an application of multi-agent system in machining industry
    Zakaria Yahouni, Asma Ladj, Farouk Belkadi, Oussama Meski, Mathieu Ritou · 2021 · International Journal of Computer Integrated Manufacturing
24. Integrative System Biology Analysis of Transcriptomic Responses to Drought Stress in Soybean (Glycine max L.)
    Amir Ghaffar Shahriari, Zahra Soltani, Aminallah Tahmasebi, Péter Poczai · 2022 · Genes
25. Advancing the Spatiotemporal Dimension of Wildlife–Pollution Interactions
    Jack A. Brand, Jake M. Martin, Marcus Michelangeli, Eli S.J. Thoré, Natalia Sandoval Herrera, Erin S. McCallum, Drew Szabo, Damien L. Callahan, Timothy D. Clark, Michael G. Bertram et al. · 2025 · Environmental Science & Technology Letters
26. A Brave New World: Virtual Reality and Augmented Reality in Systems Biology
    Berk Turhan, Zeynep Hulya Gumus · 2022 · Frontiers in Bioinformatics
27. Harnessing optical advantages in computing: a review of current and future trends
    Caxton Griffith Kibebe, Yue Liu, Jiaxi Tang · 2024 · Frontiers in Physics
28. Decisions-to-Data using Level 5 information fusion
    Erik Blasch · 2014 · Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE
29. Service System Platforms to improve value co-creation: insights for Translational Medicine
    Luca Carrubbo, Ylenia Cavacece, Roberto Bruni, MORETTA TARTAGLIONE, Andrea · 2015 · Archivio Istituzionale della Ricerca - Università degli Studi di Cassino
30. Understanding hourly patterns of Olea pollen concentrations as tool for the environmental impact assessment.
    S. Fernández-Rodríguez, Jose Maria Maya Manzano, Alejandro Monroy Colín, R. Pecero-Casimiro, J. Buters, J. Oteros · 2020 · Science of the Total Environment
31. Impact of Image-Processing Routines on Mapping Glacier Surface Facies from Svalbard and the Himalayas Using Pixel-Based Methods
    Shridhar Digambar Jawak, Sagar Filipe Wankhede, Alvarinho Joaozinho Luis, Keshava Balakrishna · 2022 · Remote Sensing
32. Analyzing large scale genomic data on the cloud with Sparkhit
    Liren Huang, Jan Krüger, Alexander Sczyrba · 2017 · Bioinformatics
33. Locality Preserving Projection Based on F-norm
    Xiangjie Hu, Yanfeng Sun, Junbin Gao, Yongli Hu, Baocai Yin · 2018 · Proceedings of the AAAI Conference on Artificial Intelligence
34. The HTPmod Shiny application enables modeling and visualization of large-scale biological data
    Dijun Chen, Liang-Yu Fu, Dahui Hu, Christian Klukas, Ming Chen, Kerstin Kaufmann · 2018 · Communications Biology
35. Diagnosis of nontuberculous mycobacterial infections using genomics and artificial intelligence-machine learning approaches: scope, progress and challenges
    Madhan Kumar Murthy, Vivek Kumar Gupta, Anand Prakash Maurya · 2025 · Frontiers in Microbiology
36. QMachine: commodity supercomputing in web browsers
    Sean R. Wilkinson, Jonas S. Almeida · 2014 · BMC Bioinformatics
37. Systems biology and machine learning approaches identify drug targets in diabetic nephropathy
    Maryam Abedi, Hamid Reza Marateb, Mohammad Reza Mohebian, Seyed Hamid Aghaee‐Bakhtiari, Seyed Mahdi Nassiri, Yousof Gheisari · 2021 · Scientific Reports
38. A Survey of Biological Data in a Big Data Perspective
    Gabriel Dall’Alba, Pedro Lenz Casa, Fernanda Pessi de Abreu, Daniel Luís Notari, Scheila de Ávila e Silva · 2022 · Big Data
39. Cloud Computing for BioLabs
    Abraham Pouliakis, Aris Spathis, Christine Kottaridi, Antonia Mourtzikou, Marilena Stamouli, Stavros K. Archondakis, Efrossyni Karakitsou, Petros Karakitsos · 2014 · Advances in healthcare information systems and administration book series
40. Evolution Oriented Monitoring oriented to Security Properties for Cloud Applications
    Jamal Toutouh, Antonio Muñoz, Sergio Nesmachnow · 2018 · International Conference on Availability, Reliability and Security (ARES)
41. Quantum computing without quantum computers: Database search and data processing using classical wave superposition
    Mykhaylo Balynsky, Howard Chiang, David Gutierrez, A. V. Kozhevnikov, Yuri Filimonov, Alexander G. Khitun · 2021 · Journal of Applied Physics
42. Vibrio Species
    James D. Oliver, Carla Pruzzo, Luigi Vezzulli, James B. Kaper · 2014 · ASM Press eBooks
43. Disease Gene Prioritization Using Network and Feature
    Bingqing Xie, Gady Agam B, Sandhya Balasubramanian, Jinbo Xu, T. Conrad Gilliam, Natalia Maltsev, Daniela Börnigen · 2015 · Journal of Computational Biology
44. Assessing the Growth of Bioactive Compounds and Scaffolds over Time: Implications for Lead Discovery and Scaffold Hopping
    Swarit Jasial, Ye Hu, Jürgen Bajorath · 2016 · Journal of Chemical Information and Modeling
45. An Extended Classification and Comparison of NoSQL Big Data Models
    Sugam Sharma · 2015 · arXiv (Cornell University)
46. The Synergy of Machine Learning and Epidemiology in Addressing Carbapenem Resistance: A Comprehensive Review
    Aikaterini Sakagianni, Christina Koufopoulou, Petros Koufopoulos, Georgios Feretzakis, Dimitris Kalles, Evgenia Paxinou, Pavlos M. Myrianthefs, Vassilios S. Verykios · 2024 · Antibiotics
47. Genome Research in the Cloud
    Asheesh Shanker · 2012 · OMICS A Journal of Integrative Biology
48. Benchmarking Undedicated Cloud Computing Providers for Analysis of Genomic Datasets
    Seyhan Yazar, George E.C. Gooden, David Anthony Mackey, Alex William Hewitt · 2014 · PLoS ONE
49. Usage of Social Media and Cloud Computing During Natural Hazards
    Qunying Huang, Guido Cervone · 2016 · Elsevier eBooks
50. Emerging trend of big data analytics in bioinformatics: a literature review
    Kalyan Nagaraj, G. S. Sharvani, Amulyashree Sridhar · 2017 · International Journal of Bioinformatics Research and Applications
51. SOVAS: a scalable online visual analytic system for big climate data analysis
    Zhenlong Li, Qunying Huang, Yuqin Jiang, Fei Hu · 2019 · International Journal of Geographical Information Systems
52. Computational model for disease research
    Xing Chen, Huang Li · 2023 · Briefings in Bioinformatics
53. Information technology solutions for integration of biomolecular and clinical data in the identification of new cancer biomarkers and targets for therapy
    Hubert Hackl, Gernot Stocker, Pornpimol Charoentong, Bernhard Mlecnik, Gabriela Bindea, Jérôme Galon, Zlatko Trajanoski · 2010 · Pharmacology & Therapeutics
54. Contemporary challenges for data-intensive scientific workflow management systems
    Ryan L. Mork, Paul Martin, Zhiming Zhao · 2015 · Workshop on Workflows in Support of Large-Scale Science (WORKS)
55. TOWARDS A DESIGN MODEL FOR INTERDISCIPLINARY INFORMATION SYSTEMS CURRICULUM DEVELOPMENT, AS EXEMPLIFIED BY BIG DATA ANALYTICS EDUCATION
    Frieder Jacobi, Steffen Jähn, Robert Krawatzeck, Barbara Dinter, Anja Lorenz · 2014 · Journal of the Association for Information Systems
56. Whole-Genome Alignment: Methods, Challenges, and Future Directions
    Saada, Bacem, Zhang, Tianchi, Siga, Estevao, Zhang, Jing, Magalhães Muniz, Maria Malane · 2024 · Applied Sciences
57. AN INTERACTIVE WEB-BASED ANALYSIS FRAMEWORK FOR REMOTE SENSING CLOUD COMPUTING
    X. Z. Wang, Hongming Zhang, Jianghua Zhao, Q. H. Lin, Y. C. Zhou, J. H. Li · 2015 · ISPRS annals of the photogrammetry, remote sensing and spatial information sciences
58. Locus-Specific Databases in Cancer: What Future in a Post-Genomic Era? The TP53 LSDB paradigm
    Thierry Soussi · 2014 · Human Mutation
59. Improving the performance of Apache Hadoop on pervasive environments through context-aware scheduling
    Guilherme Weigert Cassales, Andréa Schwertner Charão, Manuele Kirsch-Pinheiro, Carine Souveyet, Luiz Angelo Steffenel · 2016 · Journal of Ambient Intelligence and Humanized Computing
60. Genome sequencing and next-generation sequence data analysis: A comprehensive compilation of bioinformatics tools and databases
    José Carlos Jiménez-López, Emma Wanjiru Gachomo, Sweta Sharma, Simeon Oloni Kotchoni · 2013 · American Journal of Molecular Biology
61. VCGDB: a dynamic genome database of the Chinese population
    Yunchao Ling, Zhong Jin, Mingming Su, Jun Zhong, Yongbing Zhao, Jun Myoung Yu, Jiayan Wu, Jingfa Xiao · 2014 · BMC Genomics
62. Toward a web-based real-time radiation treatment planning system in a cloud computing environment
    Yong Hum Na, Tae Suk Suh, Daniel Stuart Kapp, Lei Xing · 2013 · Physics in Medicine and Biology
63. Accelerating Translational Research by Clinically Driven Development of an Informatics Platform–A Case Study
    Imad Abugessaisa, Saedís Saevarsdóttir, Giorgos Tsipras, Staffan Lindblad, Charlotta Sandin, Pernilla Nikamo, Mona Ståhle, Vivianne Malmström, Lars Klareskog, Jesper N. Tegner · 2014 · PLoS ONE
64. A hardware accelerator for data classification within the sensing infrastructure
    Mario Barbareschi, Ermanno Battista, Nicola Mazzocca, Sridhar Venkatesan · 2014 · IEEE International Conference on Information Reuse and Integration (IRI)
65. Exploring Functional Acceleration of OpenCL on FPGAs and GPUs Through Platform-Independent Optimizations
    Umar Ibrahim Minhas, Roger Woods, Georgios Karakonstantis · 2018 · Lecture notes in computer science
66. IMass Time: The Future, in Future!
    Qingwei Ma, Eric Adua, Mary C. Boyce, Xingang Li, Guang Ji, Wei Wang · 2018 · OMICS A Journal of Integrative Biology
67. Multi-Species Network Inference Improves Gene Regulatory Network Reconstruction for Early Embryonic Development in Drosophila
    Anagha Joshi, Yvonne Beck, Tom Michoel · 2015 · Journal of Computational Biology
68. Transcriptome repository of North-Western Himalayan endangered medicinal herbs: a paramount approach illuminating molecular perspective of phytoactive molecules and secondary metabolism
    Bhuvnesh Kapoor, Arun Kumar, Pankaj Kumar · 2021 · Molecular Genetics and Genomics
69. Setting the Standards for Signal Transduction Research
    Julio Sáez-Rodríguez, Leonidas G. Alexopoulos, Gustavo A. Stolovitzky · 2011 · Science Signaling
70. Now and Next-Generation Sequencing Techniques: Future of Sequence Analysis Using Cloud Computing
    Radhe Shyam Thakur, Rajib Bandopadhyay, Bratati Chaudhary, Sourav Chatterjee · 2012 · Frontiers in Genetics
71. COMPUTATIONAL BIOLOGY IN THE CLOUD: METHODS AND NEW INSIGHTS FROM COMPUTING AT SCALE
    Peter M. Kasson · 2012 · Pacific Symposium on Biocomputing (PSB)
72. Big Data: An Introduction
    Hrushikesha Mohanty · 2015 · Studies in big data
73. An overview of online based platforms for sharing and analyzing electrophysiology data from big data perspective
    Yang Chen, Zhongyi Wang, Gang Yuan, Lan Huang · 2017 · Wiley Interdisciplinary Reviews Data Mining and Knowledge Discovery
74. The Sparse Fourier Transform: Theory and Practice
    Haitham Hassanieh · 2018
75. Local Decode and Update for Big Data Compression
    Shashank Vatedka, Aslan Tchamkerten · 2020 · IEEE Transactions on Information Theory
76. Predicting Toxicity Properties through Machine Learning
    Luz Adriana Borrero López, Lilibeth Sánchez Guette, Enrique Santana López, Omar Bonerge Pineda, Edgardo Buelvas Castro · 2020 · Procedia Computer Science
77. Application of Systems Engineering Principles and Techniques in Biological Big Data Analytics: A Review
    Qiang He, Jin Wang · 2020 · Processes
78. Bioinformatics tools and database resources for systems genetics analysis in mice--a short review and an evaluation of future needs
    Caroline Durrant, Morris A. Swertz, Rudi Alberts, Danny Arends, Steffen Möller, Richard Mott, Pjotr Prins, K. Joeri van der Velde, Ritsert C. Jansen, Klaus Schughart · 2011 · Briefings in Bioinformatics
79. Performance improvement of data mining in Weka through multi-core and GPU acceleration: opportunities and pitfalls
    Tiago Augusto Engel, Andréa Schwertner Charão, Manuele Kirsch-Pinheiro, Luiz Angelo Steffenel · 2015 · Journal of Ambient Intelligence and Humanized Computing
80. A Framework for Global Collaborative Data Management for Malaria Research
    Juan B. Gutiérrez, Omar S. Harb, Jie Zheng, Daniel J. Tisch, Edwin D. Charlebois, Christian J. Stoeckert, Steven A. Sullivan · 2015 · American Journal of Tropical Medicine and Hygiene
81. “Big data” and “open data”: What kind of access should researchers enjoy?
    Gilles Châtellier, Vincent Varlet, Corinne Blachier, Nathalie Beslay, Jéhan‐Michel Béhier, David Braunstein, Mireille Caralp, Brigitte Congard-Chassol, Isabelle Diaz, Laure S Fournier et al. · 2016 · Therapies
82. Pairwise Correlation Analysis of the Alzheimer’s Disease Neuroimaging Initiative (ADNI) Dataset Reveals Significant Feature Correlation
    Erik D. Huckvale, Matthew W. Hodgman, Brianna B. Greenwood, DEVORAH STUCKI, Katrisa M. Ward, Mark Ebbert, John S. K. Kauwe, The Alzheimer’s Disease Neuroimaging Initiative, Justin B. Miller · 2021 · Genes
83. Energy efficient MapReduce with VFI-enabled multicore platforms
    Karthi Duraisamy, Ryan Kim, Wonje Choi, Guangshuo Liu, Partha Pratim Pande, Radu Mărculescu, Diana Marculescu · 2015 · ACM/IEEE Design Automation Conference (DAC)
84. Scaling Predictive Modeling in Drug Development with Cloud Computing
    Behrooz Torabi Moghadam, Jonathan Alvarsson, Marcus Holm, Martin Eklund, Lars Carlsson, Ola Spjuth · 2014 · Journal of Chemical Information and Modeling
85. Data management, documentation and analysis systems in radiation oncology: a multi-institutional survey
    Kerstin Anne Kessel, Stephanie Elisabeth Combs · 2015 · Radiation Oncology
86. Key based data analytics across data centers considering bi-level resource provision in cloud computing
    Jiangtao Zhang, Lingmin Zhang, Hejiao Huang, Zeo L. Jiang, Xuan Wang · 2016 · Future Generation Computer Systems
87. Preparing for Responsible Sharing of Clinical Trial Data
    Mauricio Ferri, Kald Abdallah · 2014 · New England Journal of Medicine
88. Optical networks for cost-efficient and scalable provisioning of big data traffic
    Krzysztof M. Walkowiak, Michał Woźniak, Mirosław Klinkowski, Wojciech Kmiecik · 2014 · International Journal of Parallel Emergent and Distributed Systems
89. A literature mining-based approach for identification of cellular pathways associated with chemoresistance in cancer
    Jung Hun Oh, Joseph O. Deasy · 2015 · Briefings in Bioinformatics
90. Relational Network for Knowledge Discovery through Heterogeneous Biomedical and Clinical Features
    Huaidong Chen, Wei Chen, Chenglin Liu, Le Zhang, Jing Su, Xiaobo Zhou · 2016 · Scientific Reports
91. Toward High-Performance Computing and Big Data Analytics Convergence: The Case of Spark-DIY
    Silvina Caíno‐Lores, Jesús Carretero, Bogdan Nicolae, Orçun Yildiz, Tom Peterka · 2019 · IEEE Access
92. Can data repositories help find effective treatments for complex diseases?
    Gregory K. Farber · 2016 · Progress in Neurobiology
93. Big data survey in healthcare and a proposal for intelligent data diagnosis framework
    Muhammad Imran Babar, Muhammad Jehanzeb, Masitah Ghazali, Dayang N. A. Jawawi, Falak Sher, Shahbaz Ahmed Khan Ghayyur · 2016 · IEEE International Conference on Computer and Communications (ICCC)
94. HPC-as-a-Service via HEAppE Platform
    Václav Svatoň, Jan Martinovič, Jan Křenek, Thomas Esch, Pavel Tomančák · 2019 · Advances in intelligent systems and computing
95. Comparative co-expression network analysis extracts the SlHSP70 gene affecting to shoot elongation of tomato
    Nam Tuan Vu, Ken Kamiya, Atsushi Fukushima, Shuhei Hao, Ning Wang, Tohru Ariizumi, Hiroshi Ezura, Miyako Kusano · 2019 · Plant Biotechnology
96. Genomics as a service: A joint computing and networking perspective
    Gianluca Reali, Mauro Femminella, E. Nunzi, Dario Valocchi · 2018 · Computer Networks
97. A Novel Hybridized Rough Set and Improved Harmony Search Based Feature Selection for Protein Sequence Classification
    M. Bagyamathi, H. Hannah Inbarani · 2015 · Studies in big data
98. An efficient large‐scale whole‐genome sequencing analyses practice with an average daily analysis of 100Tbp: ZBOLT
    Zhichao Li, Yinlong Xie, Wenjun Zeng, Yushan Huang, Shengchang Gu, Ya Ming Gao, Weihua Huang, Lihua Lu, Xiaohong Wang, Jiasheng Wu et al. · 2023 · Clinical and Translational Discovery
99. « Big data » et « open data » : quel accès pour la recherche ?
    Gilles Châtellier, Vincent Varlet, Corinne Blachier, Nathalie Beslay, Jéhan‐Michel Béhier, David Braunstein, Mireille Caralp, Brigitte Congard-Chassol, Isabelle Diaz, Laure S Fournier et al. · 2016 · Therapies
100. Bioinformatics Workflows With NoSQL Database in Cloud Computing
     Polyane Wercelens, Waldeyr Mendes Cordeiro da Silva, Fernanda Hondo, Klayton Rodrigues de Castro, Maria Emília M. T. Walter, Aletéia Araújo, Sérgio Lifschitz, Maristela Terto de Holanda · 2019 · Evolutionary Bioinformatics