Coupling mRNA processing with transcription in time and space

Cited by (837)

Items 601–700 of 837

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10. In Vitro System for Coupling RNAP II Transcription to Primary microRNA Processing and a Three-Way System for RNAP II Transcription/Splicing/microRNA Processing
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13. Lessons from (pre-)mRNA Imaging
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14. Deciphering the Dynamic Landscape of Transcription-Associated mRNP Quality Control Components Over the Whole Yeast Genome
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16. Origins and impacts of new mammalian exons
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18. NET-prism enables RNA polymerase-dedicated transcriptional interrogation at nucleotide resolution
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19. Widespread interaction between ADAR1 and transcriptional byproducts
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21. Type I PRMTs and PRMT5 Independently Regulate Both snRNP Arginine Methylation and Post-Transcriptional Splicing
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22. Chromatin-contact atlas reveals disorder-mediated protein interactions and moonlighting chromatin-associated RBPs
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23. Transcription | Messenger RNA Processing in Eukaryotes
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24. A Sequential Binding Mechanism for 5’ Splice Site Recognition and Modulation for the Human U1 snRNP
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25. Mechanisms of transcription attenuation and condensation of RNA polymerase II by RECQ5
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26. Pervasive noise in human splice site selection
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31. In-depth analysis of the RNA editing landscape in intracranial aneurysms and its potential role in alternative splicing
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32. Extrinsic Noise or Intrinsic Coupling: Dissecting Correlated Fluctuations in Gene Transcription
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34. Co-transcriptional gene regulation in plants
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37. Simultaneous Study of Circular RNAs and Messenger RNAs in Colorectal Cancer: The Unbalanced Fate of a Couple?
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38. Protein-interaction network analysis reveals the role of Prp19 splicing factor in transcription of both intron-containing and intron-lacking genes
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39. The emerging role of circular RNAs in neurodegenerative diseases and viral infections
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40. The interplay between epigenetic mechanisms and deleterious mutations: implications for fitness, evolution and conservation
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41. Alternative splicing is coordinated through interconnected response pathways to direct major features of fungal cell physiology
    João Neves‐da‐Rocha, Marcos E. R. Lopes, Mayara I.G. Azevedo, Monise Fazolin Petrucelli, Maria J. Santos-Saboya, Antônio Rossi, Nilce Maria Martinez-Rossi · 2026 · Fungal Biology Reviews
42. Regulatory Divergence of Transcript Isoforms in a Mammalian Model System
    Sarah Leigh-Brown, Ângela Gonçalves, David Thybert, Klara Stefflova, Stephen Watt, Paul Flicek, Alvis Brāzma, John C. Marioni, Duncan T. Odom · 2015 · PLoS ONE
43. Mechanisms of Antisense Oligonucleotides
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44. Intron removal by the spliceosome: A solo job or a team effort?
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45. A Transendothelial Leukocyte Transmigration Model Based on Computational Fluid Dynamics and BP Neural Network
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46. Post-transcriptional regulation
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47. Dissecting the Immune System through Gene Regulation
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48. Role of Non-coding RNAs in Disease Resistance in Plants
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49. Synergistic DNA and RNA binding of the Hox transcription factor Ultrabithorax coordinates splicing and shapes in vivo homeotic functions
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50. Perspective: divergent mRNA transcription machinery in Paramecium
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51. Diversité des mécanismes de transcription des virus géants
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52. A lead candidate functional single nucleotide polymorphism within the WARS2 gene associated with waist-hip-ratio does not alter RNA stability
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54. The Spliceosome and Pre-mRNA Splicing
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55. MIR193BHG: a novel hypoxia-inducible long noncoding RNA involved in the fine-tuning of cholesterol metabolism
    Xue Wu · 2016 · IUScholarWorks (Indiana University)
56. Characterizing RNA Pseudouridylation by Convolutional Neural Networks
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57. The exon junction complex regulates the release and phosphorylation of paused RNA polymerase II
    Junaid Akhtar, Nastasja Kreim, Fédérico Marini, Giriram Mohana, Daniel Brüne, Harald Binder, Jean‐Yves Roignant · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
58. Transient N-6-Methyladensosine Transcriptome Sequencing Reveals a Regulatory Role of m6A in Splicing Efficiency
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59. Differential regulation of alternative promoters emerges from unified kinetics of enhancer-promoter interaction
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60. Dynamic Chromatin State Profiling Reveals Regulatory Principle of Pluripotency During Shoot Regeneration
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61. Alternative splicing changes are associated with pre-birth adaptation during lung development
    Marta Fidalgo, Catarina G Fonseca, Paulo Caldas, Alexandre A. S. F. Raposo, Tania Balboni, Ana Rita Grosso, Francisca F. Vasconcelos, Claudio Areias Franco · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
62. Structural basis of transcription: RNA Polymerase II substrate binding and metal coordination at 3.0 Å using a free-electron laser
    Guowu Lin, Christopher O. Barnes, Simon C. Weiss, Bercem Dutagaci, Chenxi Qiu, Michael Feig, Jihnu Song, Artem Y. Lyubimov, Aina E. Cohen, Craig D. Kaplan et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
63. Uncovering the translatome impact of transcriptome induced diversity in eukaryotes: framework and innovative insights
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64. Inferring Single-Cell RNA Kinetics from Various Biological Priors
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65. Inhibition of SF3B1 affects recruitment of P-TEFb to chromatin through multiple mechanisms
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66. Coordinate control of the RNA polymerase II transcription cycle by CDK9-dependent, tripartite phosphorylation of SPT5
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67. Co-Transcriptional Rna Processing Boosts Zygotic Gene Activation
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68. Genome-wide Viral Nascent RNA Sequencing Unveils Polymerase Pausing Landscape at Single-nucleotide Precision
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69. Benchmarking algorithms for RNA velocity inference
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70. Functional involvement of two histone-methyltransferases in response to stress and in regulation of flowering time in Arabidopsis thaliana
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71. Mechanisms of Translational Repression of the Sperm Mitochondria Associated-Cysteine Rich Protein (Smcp) mRNA in Round Spermatids
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72. MS-based quantitative analysis of the CRM1 export pathway and spatial proteomics of the Xenopus laevis oocyte
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73. Kinetics and mechanisms of Ikaros-mediated transcriptional regulation
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74. Models of circular RNA biogenesis
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75. Functional characterization of Pseudouridine synthase I and Y-box-binding protein 3
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79. The first murine zygotic transcription is promiscuous and uncoupled from splicing and
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81. An “AID” to understanding links between splicing and transcription
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82. Optimizing In Vitro Pre-mRNA 3′ Cleavage Efficiency: Reconstitution from Anion-Exchange Separated HeLa Cleavage Factors and from Adherent HeLa Cell Nuclear Extract
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83. Accurate Identification of Adenosine Deamination
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84. The Role of RNF40 mediated H2B monoubiquitination in transcription
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86. Epitranscriptomics for Biomedical Discovery
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87. Epigenetics in Hyperphagia
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88. Long-read sequencing of nascent RNA reveals coupling among RNA processing events
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89. Transcriptional programs during mammalian cell prolifération
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90. A Note on Stochastic Modeling of Biological Systems: Automatic Generation of an Optimized Gillepsie Algorithm
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91. Secondary structure of pre-mRNA introns for genes in the 15q11-12 locus. Mapping of functionally significant motives for RNA-binding proteins and nucleosome positioning signals
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92. Quantitative single-cell splicing analysis reveals an ‘economy of scale’ filter for gene expression
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93. A Genome-Scale Analysis of Alternative Splicing Regulation by Splicing Factors in C. elegans
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94. Characterisation of an intron-split Solanales microRNA
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95. Functional impact of alternative splicing in vertebrate proteomes across tissues and cell types
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96. Multi-omics analysis of transcription kinetics in human cells
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97. Smu1 and RED play an important role for the activation of human spliceosomes
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98. Author response: Kinetic competition during the transcription cycle results in stochastic RNA processing
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99. Analyzing Co-transcriptional Processing by Nanopore Sequencing
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100. Tight, Inducible Gene Expression Using Alternatively Spliced Exons from Plants
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