Codon optimality, bias and usage in translation and mRNA decay

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1. Additional file 4 of Frameshift and wild-type proteins are often highly similar because the genetic code and genomes were optimized for frameshift tolerance
   Wang, Xiaolong, Quanjiang Dong, Gang Chen, Jianye Zhang, Yongqiang Liu, Yujia Cai · 2022 · Figshare
2. Additional file 5 of Frameshift and wild-type proteins are often highly similar because the genetic code and genomes were optimized for frameshift tolerance
   Xiaolong Wang, Quanjiang Dong, Gang Chen, Jianye Zhang, Yongqiang Liu, Yujia Cai · 2022 · Figshare
3. Additional file 2 of Frameshift and wild-type proteins are often highly similar because the genetic code and genomes were optimized for frameshift tolerance
   Wang, Xiaolong, Quanjiang Dong, Gang Chen, Jianye Zhang, Yongqiang Liu, Yujia Cai · 2022 · Figshare
4. Additional file 3 of Frameshift and wild-type proteins are often highly similar because the genetic code and genomes were optimized for frameshift tolerance
   Xiaolong Wang, Quanjiang Dong, Gang Chen, Jianye Zhang, Yongqiang Liu, Yujia Cai · 2022 · Figshare
5. Additional file 1 of Frameshift and wild-type proteins are often highly similar because the genetic code and genomes were optimized for frameshift tolerance
   Wang, Xiaolong, Quanjiang Dong, Gang Chen, Jianye Zhang, Yongqiang Liu, Yujia Cai · 2022 · Figshare
6. A Codon Usage Shift of Selecting A/T-Ending Optimal Codons in Hexaploid Actinidia Deliciosa is Likely from Environmental Adaptation
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10. Human DDX6 regulates translation and decay of inefficiently translated mRNAs
    Ramona Weber, Lara Wohlbold, Chung-Te Chang · 2024 · eLife
11. Reviewer #2 (Public Review): Human DDX6 regulates translation and decay of inefficiently translated mRNAs
    Ramona Weber, Lara Wohlbold, Chung-Te Chang · 2024 · eLife
12. Author response: Human DDX6 regulates translation and decay of inefficiently translated mRNAs
    Ramona Weber, Lara Wohlbold, Chung-Te Chang · 2024 · eLife
13. eLife Assessment: Human DDX6 regulates translation and decay of inefficiently translated mRNAs
    Krishnaswamy VijayRaghavan · 2024 · eLife
14. Reviewer #1 (Public Review): Human DDX6 regulates translation and decay of inefficiently translated mRNAs
    Ramona Weber, Lara Wohlbold, Chung-Te Chang · 2024 · eLife
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41. Additional file 11 of Differential regulation of mRNA fate by the human Ccr4-Not complex is driven by coding sequence composition and mRNA localization
    Gillen, Sarah L., Giacomelli, Chiara, Kelly Hodge, Zanivan, Sara, Bushell, Martin, Ania Wilczynska · 2021 · Figshare
42. Additional file 2 of Control of immediate early gene expression by CPEB4-repressor complex-mediated mRNA degradation
    Fabian Poetz, Svetlana Lebedeva, Johanna Schott, Doris Lindner, Uwe Ohler, Georg Stoecklin · 2022 · Figshare
43. Additional file 3 of Tissue-specific temperature dependence of RNA editing levels in zebrafish
    Wenhao Li, Bu, Mengdi, Ruiqin Hu, Jiang, Shouwen, Chen, Liangbiao, George N. Somero · 2024 · Figshare
44. Additional file 14 of Control of immediate early gene expression by CPEB4-repressor complex-mediated mRNA degradation
    Fabian Poetz, Svetlana Lebedeva, Johanna Schott, Doris Lindner, Uwe Ohler, Georg Stoecklin · 2022 · Figshare
45. Additional file 2 of Tissue-specific temperature dependence of RNA editing levels in zebrafish
    Wenhao Li, Bu, Mengdi, Ruiqin Hu, Jiang, Shouwen, Chen, Liangbiao, George N. Somero · 2024 · Figshare
46. Additional file 10 of Differential regulation of mRNA fate by the human Ccr4-Not complex is driven by coding sequence composition and mRNA localization
    Gillen, Sarah L., Giacomelli, Chiara, Kelly Hodge, Zanivan, Sara, Bushell, Martin, Ania Wilczynska · 2021 · Figshare
47. Additional file 1 of Differential regulation of mRNA fate by the human Ccr4-Not complex is driven by coding sequence composition and mRNA localization
    Gillen, Sarah L., Giacomelli, Chiara, Kelly Hodge, Zanivan, Sara, Bushell, Martin, Ania Wilczynska · 2021 · Figshare
48. Additional file 1 of Gliosis-dependent expression of complement factor H truncated variants attenuates retinal neurodegeneration following ischemic injury
    Josef Biber, Yassin Jabri, Sarah Glänzer, Aaron Dort, Patricia Hoffelner, Christoph Q. Schmidt, Oliver Bludau, Diana Pauly, Antje Grosche · 2024 · Figshare
49. Additional file 4 of Tissue-specific temperature dependence of RNA editing levels in zebrafish
    Wenhao Li, Bu, Mengdi, Ruiqin Hu, Jiang, Shouwen, Chen, Liangbiao, George N. Somero · 2024 · Figshare
50. Additional file 9 of Differential regulation of mRNA fate by the human Ccr4-Not complex is driven by coding sequence composition and mRNA localization
    Sarah L. Gillen, Giacomelli, Chiara, Kelly Hodge, Zanivan, Sara, Bushell, Martin, Ania Wilczynska · 2021 · Figshare
51. Additional file 2 of Temporal landscape and translational regulation of A-to-I RNA editing in mouse retina development
    Ludong Yang, Yi, Liang, Yang, Jiaqi, Rui Zhang, Xie, Zhi, Wang, Hongwei · 2024 · Figshare
52. Additional file 9 of Crosstalk between codon optimality and cis-regulatory elements dictates mRNA stability
    Santiago Gerardo Medina-Muñoz, Gopal Kushawah, Luciana Andrea Castellano, Michay Diez, Michelle Lynn DeVore, María José Blanco Salazar, Ariel Bazzini · 2021 · Figshare
53. Additional file 1 of A critical overview of current progress for COVID-19: development of vaccines, antiviral drugs, and therapeutic antibodies
    Monika Kumari, Lu, Ruei-Min, Li, Mu-Chun, Jhih‐Liang Huang, Hsu, Fu-Fei, Ko, Shih-Han, Ke, Feng-Yi, Su, Shih-Chieh, Liang, Kang-Hao, Joyce Pei‐Yi Yuan et al. · 2022 · Figshare
54. Additional file 1 of Tissue-specific temperature dependence of RNA editing levels in zebrafish
    Wenhao Li, Bu, Mengdi, Ruiqin Hu, Jiang, Shouwen, Chen, Liangbiao, George N. Somero · 2023 · Figshare
55. Additional file 1 of Massively parallel gene expression variation measurement of a synonymous codon library
    Schmitz, Alexander, Zhang, Fuzhong · 2021 · Figshare
56. Additional file 1 of Crosstalk between codon optimality and cis-regulatory elements dictates mRNA stability
    Santiago Gerardo Medina-Muñoz, Gopal Kushawah, Luciana Andrea Castellano, Michay Diez, Michelle Lynn DeVore, María José Blanco Salazar, Ariel Bazzini · 2021 · Figshare
57. Additional file 1 of Temporal landscape and translational regulation of A-to-I RNA editing in mouse retina development
    Ludong Yang, Yi, Liang, Yang, Jiaqi, Rui Zhang, Xie, Zhi, Wang, Hongwei · 2024 · Figshare
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