The selection and function of cell type-specific enhancers

Heinz, Sven, Romanoski, Casey E., Benner, Christopher, Glass, Christopher K.·2015·Nature Reviews Molecular Cell Biology

Cited by (1,001)

Items 501–600 of 1,001

  1. Deaths in gene therapy of Duchenne muscular dystrophy and other diseases: Underlying mechanisms and mitigating strategies
    Dongsheng Duan, Roland W. Herzog · 2026 · Molecular Therapy
  2. Chemical-induced epigenome resetting for regeneration program activation in human cells
    Guan Wang, Yanglu Wang, Yulin Lyu, Huanjing He, Shijia Liuyang, Jinlin Wang, Shicheng Sun, Lin Cheng, Yao Fu, Jialiang Zhu et al. · 2023 · Cell Reports
  3. CapsEnhancer: An Effective Computational Framework for Identifying Enhancers Based on Chaos Game Representation and Capsule Network
    Lantian Yao, Peilin Xie, Jiahui Guan, Chia‐Ru Chung, Yixian Huang, Yuxuan Pang, Huacong Wu, Ying‐Chih Chiang, Tzong-Yi Lee · 2024 · Journal of Chemical Information and Modeling
  4. CRISPR Screening of Transcribed Super-Enhancers Identifies Drivers of Triple-Negative Breast Cancer Progression
    Michael W. Lewis, Caitlin M. King, Kamila Wiśniewska, Matthew J. Regner, Alisha R. Coffey, Michael R. Kelly, Raúl Méndez-Giráldez, Eric S. Davis, Douglas H. Phanstiel, Hector L. Franco · 2024 · Cancer Research
  5. E2 Regulates Epigenetic Signature on Neuroglobin Enhancer-Promoter in Neuronal Cells
    Michela Guglielmotto, Stefania Reineri, Andrea Iannello, Giulio Ferrero, Ludovica Vanzan, Valentina Miano, Laura Ricci, Elena Tamagno, Michele De Bortoli, Santina Cutrupi · 2016 · Frontiers in Cellular Neuroscience
  6. Lineage-Specific and Non-specific Cytokine-Sensing Genes Respond Differentially to the Master Regulator STAT5
    Xianke Zeng, Michaela Willi, Ha Youn Shin, Lothar G. Hennighausen, Chaochen Wang · 2016 · Cell Reports
  7. Disruption of Broad Epigenetic Domains in PDAC Cells by HAT Inhibitors
    D. Gerrard, Joseph R. Boyd, G. Stein, Victor X. Jin, Seth E. Frietze · 2019 · Epigenomes
  8. Aiolos regulates eosinophil migration into tissues
    Jennifer M. Felton, Carine Bouffi, Justin T. Schwartz, Kaila L. Schollaert, Astha Malik, Sushmitha Vallabh, Benjamin Wronowski, Adam Z. Magier, Li Merlin, Artem Barski et al. · 2021 · Mucosal Immunology
  9. Regulatory Effects of Clock and Bmal1 on Circadian Rhythmic TLR Expression
    Xu-li Fan, Ying Song, Dongxu Qin, Pei-Yao Lin · 2021 · International Reviews of Immunology
  10. Extended intergenic DNA contributes to neuron-specific expression of neighboring genes in the mammalian nervous system
    Ravneet Jaura, Ssu-Yu Yeh, Kaitlin N. Montanera, Alyssa Ialongo, Zobia Anwar, Yiming Lu, Kavindu Puwakdandawa, Ho Sung Rhee · 2022 · Nature Communications
  11. XLID syndrome gene Med12 promotes Ig isotype switching through chromatin modification and enhancer RNA regulation
    Farazul Haque, Tasuku Honjo, Nasim Ara Begum · 2022 · Science Advances
  12. A Cosine Similarity-Based Method to Infer Variability of Chromatin Accessibility at the Single-Cell Level
    Stanley Cai, Georgios K. Georgakilas, John L. Johnson, Golnaz Vahedi · 2018 · Frontiers in Genetics
  13. MAGGIE: leveraging genetic variation to identify DNA sequence motifs mediating transcription factor binding and function
    Zeyang Shen, Marten A. Hoeksema, Zhengyu Ouyang, Christopher W. Benner, Christopher K. Glass · 2020 · Bioinformatics
  14. Enhancer Function in the 3D Genome
    Razin, Sergey V., Ulianov, Sergey V., Iarovaia, Olga V. · 2023 · Genes
  15. Sirtuin 6 is required for the integrated stress response and resistance to inhibition of transcriptional cyclin-dependent kinases
    Nithya Kartha, Jessica E. Gianopulos, Zachary Schrank, Sarah M. Cavender, Stephanie Dobersch, Bryan D. Kynnap, Adrianne Wallace-Povirk, Cynthia L. Wladyka, Juan F. Santana, Jaeseung C. Kim et al. · 2023 · Science Translational Medicine
  16. Activation, decommissioning, and dememorization: enhancers in a life cycle
    Xiaotong Wu, Xi Wu, Wei Xie · 2023 · Trends in Biochemical Sciences
  17. Mechanosensitive super-enhancers regulate genes linked to atherosclerosis in endothelial cells
    Jin Li, Jiayu Zhu, Olivia Gray, Débora R. Sobreira, David Wu, Ru‐Ting Huang, Bernadette A. Miao, Noboru J. Sakabe, Matthew D. Krause, Minna Unelma Kaikkonen et al. · 2023 · The Journal of Cell Biology
  18. Transcription factor-associated combinatorial epigenetic pattern reveals higher transcriptional activity of TCF7L2-regulated intragenic enhancers
    Qi Liu, Russell Bonneville, Tianbao Li, Victor X. Jin · 2017 · BMC Genomics
  19. Reconstruction and Analysis of the Immune-Related LINC00987/A2M Axis in Lung Adenocarcinoma
    Jiakang Ma, Xiaoyan Lin, Xueting Wang, Qing-Qing Min, Tonglian Wang, Chaozhi Tang · 2021 · Frontiers in Molecular Biosciences
  20. Mapping the landscape of chromatin dynamics during naïve CD4+ T-cell activation
    Muhammad Munir Iqbal, Michael Serralha, Parwinder Kaur, David Martino · 2021 · Scientific Reports
  21. Biochemical and cellular characterization of transcription factors binding to the hyperconserved core promoter-associated M4 motif
    Ngo Tat Trung, Elisabeth Kremmer, Gerhard Mittler · 2016 · BMC Genomics
  22. Predicting enhancers in mammalian genomes using supervised hidden Markov models
    Tobias Zehnder, Philipp Benner, Martin Vingron · 2019 · BMC Bioinformatics
  23. Selective regulation of a defined subset of inflammatory and immunoregulatory genes by an NF-κB p50–IκBζ pathway
    Allison E. Daly, George K. Yeh, Sofia Soltero, Stephen T. Smale · 2024 · Genes & Development
  24. Characterization of the Cannabis sativa glandular trichome epigenome
    Lee James Conneely, Bhavna Hurgobin, Sophia Ng, Muluneh Tamiru, Mathew G. Lewsey · 2024 · BMC Plant Biology
  25. Atlas of cardiac endothelial cell enhancer elements linking the mineralocorticoid receptor to pathological gene expression
    L. Deng, Luisa Pollmeier, Rebecca Bednarz, Can Cao, Patrick Laurette, Luisa Wirth, Argen Mamazhakypov, Christine Bode, Lutz Hein, Ralf Gilsbach et al. · 2024 · Science Advances
  26. Long non-coding RNA repertoire and open chromatin regions constitute midbrain dopaminergic neuron - specific molecular signatures
    J. Gendron, Claire Sauty-Colace, Nicolas Beaume, Hugues Cartonnet, Justine Guégan, Damien Ulveling, Corinne Pardanaud-Glavieux, Ivan Moszer, Hélène Cheval, Philippe Ravassard · 2019 · Scientific Reports
  27. Interplay between FACT subunit SPT16 and TRIM33 can remodel chromatin at macrophage distal regulatory elements
    Federica Ferri, Vanessa Petit, Vilma Barroca, Paul‐Henri Roméo · 2019 · Epigenetics & Chromatin
  28. Multi-Dimensional Gene Regulation in Innate and Adaptive Lymphocytes: A View From Regulomes
    Nilisha Fernando, Giuseppe Sciumè, John J. O’Shea, Han‐Yu Shih · 2021 · Frontiers in Immunology
  29. How to tune an enhancer
    Scott Barolo · 2016 · Proceedings of the National Academy of Sciences
  30. Enhancers: A Focus on Synthetic Biology and Correlated Gene Expression
    Christopher H. Bohrer, Nadezda A. Fursova, Daniel R. Larson · 2024 · ACS Synthetic Biology
  31. Enhancer regulatory networks globally connect non-coding breast cancer loci to cancer genes
    Yihan Wang, Daniel A. Armendariz, Lei Wang, Huan Zhao, Shiqi Xie, Gary C. Hon · 2025 · Genome biology
  32. Computational Approaches for Mining GRO-Seq Data to Identify and Characterize Active Enhancers
    Anusha Nagari, Shino Murakami, Venkat S. Malladi, W. Lee Kraus · 2016 · Methods in molecular biology
  33. Labelled regulatory elements are pervasive features of the macrophage genome and are dynamically utilized by classical and alternative polarization signals
    Attila Horváth, Bence Dániel, Lajos Széles, Ixchelt Cuaranta‐Monroy, Zsolt Czimmerer, Lilla Ozgyin, László Steiner, Máté Kiss, Zoltán Simándi, Szilárd Póliska et al. · 2019 · Nucleic Acids Research
  34. Genetic polymorphism and transcriptional regulation of CREBBP gene in patient with diffuse large B-cell lymphoma
    Haifeng Zhao, Yutian Kan, Xinyuan Wang, Leiyuan Chen, Peng Ge, Zhengzi Qian · 2019 · Bioscience Reports
  35. Epigenomics-based identification of oestrogen-regulated long noncoding RNAs in ER+ breast cancer
    Zhao Zhang, Wei Yu, Dan Tang, Yufan Zhou, Mingjun Bi, Hu Wang, Yan Zheng, Mingqiu Chen, Li Li, Xinping Xu et al. · 2020 · RNA Biology
  36. Histone H3K4me1 strongly activates the DNase I hypersensitive sites in super-enhancers than those in typical enhancers
    Yujin Kang, Jin Kang, AeRi Kim · 2021 · Bioscience Reports
  37. FastGxC: Fast and powerful context-specific eQTL mapping in bulk and single-cell data
    Lena Krockenberger, Andrew Y. Lu, Mike Thompson, Lise A. Tucker, Cuining Liu, Mary Grace Gordon, Amanda Ranta, Ivan Carcamo‐Orive, Joshua W. Knowles, Andy Dahl et al. · 2026 · Cell Genomics
  38. Decoding transcriptional enhancers: Evolving from annotation to functional interpretation
    Krysta L. Engel, Mark Mackiewicz, Andrew A. Hardigan, R Myers, Daniel Savic · 2016 · Seminars in Cell and Developmental Biology
  39. Expanding the repertoire of glucocorticoid receptor target genes by engineering genomic response elements
    Verena Thormann, Laura V. Glaser, Maika Rothkegel, Marina Borschiwer, Melissa Bothe, Alisa Fuchs, Sebastiaan H. Meijsing · 2019 · Life Science Alliance
  40. Negative Evidence for a Functional Role of Neuronal DNMT3a in Persistent Pain
    Jessica Saunders, Zoe Lee Hore, Clive Gentry, Stephen Brendan McMahon, Franziska Denk · 2018 · Frontiers in Molecular Neuroscience
  41. A Novel Epi-drug Therapy Based on the Suppression of BET Family Epigenetic Readers.
    Dong‐Guk Shin, Dashzeveg Bayarsaihan · 2017 · PubMed Central
  42. Palmitic acid alters enhancers/super-enhancers near inflammatory and efferocytosis-associated genes in human monocytes
    Vinay Singh Tanwar, Marpadga A. Reddy, Suchismita Dey, Vajir Malek, Linda L. Lanting, Zhuo Chen, Rituparna Ganguly, Rama D Natarajan · 2025 · Journal of Lipid Research
  43. The brain neurovascular epigenome and its association with dementia
    Kevin Chris Ziegler, Aydan Askarova, Charbel Gergian, Reuben M Yaa, Janna D. van Dalen, Janis Lisa Transfeld, Filippo Zoppi, Jia Du, Daniel Clode, Fatemeh Rahbar et al. · 2025 · Neuron
  44. Integration of single-cell transcriptomics and epigenetic analysis reveals enhancer-controlled TIMP1 as a regulator of ferroptosis in colorectal cancer
    Meng Li, Qianyang Ni, Suyang Yu · 2023 · Genes & Genomics
  45. Active enhancers: recent research advances and insights into disease
    Junyou Zhang, Qilin Wang, Jiaxin Liu, Yingying Duan, Zhaoshuo Liu, Ziyi Zhang, Chunyan Li · 2024 · Biology Direct
  46. Linking regulatory variants to target genes by integrating single-cell multiome methods and genomic distance
    Elizabeth Dorans, Karthik A. Jagadeesh, Kushal K. Dey, Alkes L. Price · 2025 · Nature Genetics
  47. The Drosophila MLR COMPASS complex is essential for programming cis-regulatory information and maintaining epigenetic memory during development
    Claudia B. Zraly, Abdul Zakkar, John Hertenstein Perez, Jeffrey K. Ng, Kevin P. White, Matthew G. Slattery, Andrew K. Dingwall · 2020 · Nucleic Acids Research
  48. Transcriptomic and epigenomic dynamics associated with development of human iPSC-derived GABAergic interneurons
    George Andrew S. Inglis, Ying Zhou, Dillon G. Patterson, Christopher D. Scharer, Yanfei Han, Jeremy M. Boss, Zhexing Wen, Andrew Escayg · 2020 · Human Molecular Genetics
  49. Using GRO-Seq to Measure Circadian Transcription and Discover Circadian Enhancers
    Bin Fang, Dongyin Guan, Mitchell A. Lazar · 2020 · Methods in molecular biology
  50. Recent insights into the transcriptional control of theTcra/Tcrdlocus by distant enhancers during the development of T-lymphocytes
    Cristina Hernández-Munaín · 2015 · Transcription
  51. Long-Range Control of Class Switch Recombination by Transcriptional Regulatory Elements
    Audrey Dauba, Ahmed Amine Khamlichi · 2021 · Frontiers in Immunology
  52. Genome-Wide Approaches to Defining Macrophage Identity and Function
    Gregory J. Fonseca, Jason S. Seidman, Christopher K. Glass · 2016 · Microbiology Spectrum
  53. Enhancer–promoter interactions and transcription
    Douglas R. Higgs · 2020 · Nature Genetics
  54. Genome-wide Identification of the Genetic Basis of Amyotrophic Lateral Sclerosis
    Sai Zhang, Johnathan Cooper‐Knock, Annika K K Weimer, Minyi Shi, Tobias Moll, Calum Harvey, Helia Ghahremani Nezhad, John Franklin, Cleide Dos Santos Souza, Cheng Wang et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  55. Efficient count-based models improve power and robustness for large-scale single-cell eQTL mapping
    Zixuan Zhang, Artem Kim, Noah Suboc, Nicholas Mancuso, Steven Gazal · 2025 · medRxiv
  56. Activation of Bivalent Gene POU4F1 Promotes and Maintains Basal‐like Breast Cancer
    Jiahui Zhang, Nanyan Miao, Liyan Lao, Wen Deng, Jiawen Wang, Xiao‐Feng Zhu, Yongsheng Huang, Huayue Lin, Wenfeng Zeng, Wei Zhang et al. · 2024 · Advanced Science
  57. Zmiz1 is a novel regulator of brain development associated with autism and intellectual disability
    K C Rajan, Alina S. Tiemroth, Abbigail N. Thurmon, Stryder M. Meadows, Maria José Galazo · 2024 · Frontiers in Psychiatry
  58. Restriction of innate Tγδ17 cell plasticity by an AP-1 regulatory axis
    Morgan E. Parker, Naren U. Mehta, Tzu-Chieh Liao, William H. Tomaszewski, Stephanie Snyder, Julia Busch, Maria Ciofani · 2025 · Nature Immunology
  59. Master transcription regulators specifying cell-lineage fates in development as possible therapeutic targets in oncology
    L. Kondratyeva, Tatyana V. Vinogradova, I. P. Chernov, E. Sverdlov · 2015 · Russian Journal of Genetics
  60. Changes in H3K27ac following lipopolysaccharide stimulation of nasopharyngeal epithelial cells
    Lisa Borghini, Martin Lloyd Hibberd, Sonia Dávila · 2018 · BMC Genomics
  61. Epigenetic Analysis of the Chromatin Landscape Identifies a Repertoire of Murine Eosinophil-Specific PU.1-Bound Enhancers
    Jennifer M. Felton, Sushmitha Vallabh, Sreeja Parameswaran, Lee Edsall, Kevin Ernst, Benjamin Wronowski, Astha Malik, Michael Kotliar, Matthew T. Weirauch, Artem Barski et al. · 2021 · The Journal of Immunology
  62. Genome-wide identification of functional enhancers and their potential roles in pig breeding
    Yin-Qiao Wu, Yue-Dong Zhang, Hang Liu, Yun Gao, Yu-Yan Liu, Ling Chen, Lu Liu, D. Irwin, Chunhui Hou, Zhongyin Zhou et al. · 2022 · Journal of Animal Science and Biotechnology
  63. Integration of 3D genome topology and local chromatin features uncovers enhancers underlying craniofacial-specific cartilage defects
    Qiming Chen, Jiewen Dai, Qian Bian · 2022 · Science Advances
  64. Chromatin remodeler CHD7 targets active enhancer region to regulate cell type-specific gene expression in human neural crest cells
    Tsukasa Sanosaka, Hironobu Okuno, Noriko Mizota, Tomoko Andoh-Noda, Miki Sato, Ryo Tomooka, Satoe Banno, Jun Kohyama, Hideyuki Okano · 2022 · Scientific Reports
  65. Mini-review: Gene regulatory network benefits from three-dimensional chromatin conformation and structural biology
    Xiusheng Zhu, Qitong Huang, Jing Luo, Dashuai Kong, Yubo Zhang · 2023 · Computational and Structural Biotechnology Journal
  66. A comprehensive revisit of the machine‐learning tools developed for the identification of enhancers in the human genome
    Le Thi Phan, Changmin Oh, Tao He, Balachandran Manavalan · 2023 · PROTEOMICS
  67. High Fractional Occupancy of a Tandem Maf Recognition Element and Its Role in Long-Range β-Globin Gene Regulation
    Jared R. Stees, Mir Ahamed Hossain, Tomoki Sunose, Yasushi Kudo, Carolina E. Pardo, Nancy H. Nabilsi, Russell P. Darst, Rosha Poudyal, Kazuhiko Igarashi, Suming Huang et al. · 2015 · Molecular and Cellular Biology
  68. Remodeling the chromatin landscape in T lymphocytes by a division of labor among transcription factors
    Golnaz Vahedi · 2021 · Immunological Reviews
  69. Epigenetic aspects of DC development and differentiation
    Heike Chauvistré, Kristin Seré · 2020 · Molecular Immunology
  70. NFκB dynamics determine the stimulus-specificity of epigenomic reprogramming in macrophages
    Quen J. Cheng, Sho Ohta, Katherine M. Sheu, Roberto Spreafico, Adewunmi Adelaja, Brooks E. Taylor, Alexander Hoffmann · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  71. Three‐Dimensional Chromosomal Landscape Revealing miR ‐146a Dysfunctional Enhancer in Lupus and Establishing a CRISPR‐Mediated Approach to Inhibit the Interferon Pathway
    Xinyi Zhu, Yutong Zhang, Zihang Yin, Zhizhong Ye, Yuting Qin, Zhaorui Cheng, Yiwei Shen, Zhihua Yin, Jianyang Ma, Yuanjia Tang et al. · 2023 · Arthritis & Rheumatology
  72. Cis-Regulatory Elements in Mammals
    Xingyu Liu, Mengjie Chen, Xiuwen Qu, Wenjing Liu, Yuting Dou, Qingyou Liu, Deshun Shi, Mingsheng Jiang, Hui Li · 2023 · International Journal of Molecular Sciences
  73. The histone methyltransferase KMT2D is essential for embryo implantation via regulating precise differentiation of endometrial cells
    Ryosuke Kobayashi, Yuki Tajika, Junki Kohmaru, Sumiyo Morita, Takuro Horii, Yoichi Mizukami, Shizu Aikawa, Yasushi Hirota, Izuho Hatada · 2024 · Cell Death Discovery
  74. EnhancerNet: a predictive model of cell identity dynamics through enhancer selection
    Omer Karin · 2024 · Development
  75. Identification of a distal enhancer of Ucp1 essential for thermogenesis and mitochondrial function in brown fat
    Duo Su, Tingting Jiang, Yulong Song, Die Li, Siyuan Zhan, Tao Zhong, Jiazhong Guo, Li Li, Hongping Zhang, Linjie Wang · 2025 · Communications Biology
  76. Chromatin accessibility landscape of stromal subpopulations reveals distinct metabolic and inflammatory features of porcine subcutaneous and visceral adipose tissue
    Wenyang Sun, Tinghuan Zhang, Silu Hu, Qianzi Tang, Xi Long, Xu Yang, Shuangbao Gun, Lei Chen · 2022 · PeerJ
  77. Machine learning identification of enhancers in the rhesus macaque genome
    Jing He, BaDoi N. Phan, Willa G. Kerkhoff, Aydin Alikaya, Tao Hong, Olivia R Brull, J. Megan Fredericks, Morgan Sedorovitz, Chaitanya Srinivasan, Michael J. Leone et al. · 2025 · Neuron
  78. Identification of potential regulatory mutations using multi-omics analysis and haplotyping of lung adenocarcinoma cell lines
    Sarun Sereewattanawoot, Ayako Suzuki, Masahide Seki, Yoshitaka Sakamoto, Takashi Kohno, Sumio Sugano, Katsuya Tsuchihara, Yutaka Suzuki · 2018 · Scientific Reports
  79. Inhibiting LXRα phosphorylation in hematopoietic cells reduces inflammation and attenuates atherosclerosis and obesity in mice
    Maud Voisin, Elina Shrestha, Claire Rollet, Cyrus A. Nikain, Tatjana Josefs, Mélanie Mahé, Tessa J. Barrett, Hye Rim Chang, Rachel Ruoff, Jeffrey A. Schneider et al. · 2021 · Communications Biology
  80. CDK7-dependent transcriptional addiction in bone and soft tissue sarcomas: Present and Future
    Jin Yuan, Xiaoyang Li, Shengji Yu · 2022 · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer
  81. Epigenetic and environmental regulation of adipocyte function
    Yoshihiro Matsumura, Timothy F. Osborne, Juro Sakai · 2022 · The Journal of Biochemistry
  82. TET mediated epigenetic regulation of iNKT cell lineage fate choice and function
    Ageliki Tsagaratou · 2018 · Molecular Immunology
  83. Aberrant Active cis-Regulatory Elements Associated with Downregulation of RET Finger Protein Overcome Chemoresistance in Glioblastoma
    Melissa Ranjit, Masaki Hirano, Kosuke Aoki, Yusuke Okuno, Fumiharu Ohka, Akane Yamamichi, Akira Kato, Sachi Maeda, Kazuya Motomura, Keitaro Matsuo et al. · 2019 · Cell Reports
  84. Lactate and histone H3K18 lactylation are associated with metabolic control of gene expression in the retina
    Mohita Gaur, Xulong Liang, Matthew J. Brooks, Ke Jiang, Anjani Kumari, Milton A. English, Paolo Cifani, Maria C. Panepinto, Jacob K. Nellissery, Robert N. Fariss et al. · 2026 · PLoS Genetics
  85. Pioneer transcription factors in normal development and carcinogenesis
    Alexey I. Kuzmich, D. V. Tyulkina, Tatiana V. Vinogradova, Eugene D. Sverdlov · 2015 · Russian Journal of Bioorganic Chemistry
  86. Dynamic transcriptional control of macrophage miRNA signature via inflammation responsive enhancers revealed using a combination of next generation sequencing-based approaches
    Zsolt Czimmerer, Attila Horváth, Bence Dániel, Gergely Nagy, Ixchelt Cuaranta‐Monroy, Máté Kiss, Zsuzsanna Kolostyák, Szilárd Póliska, László Steiner, Nikolas Giannakis et al. · 2017 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
  87. Novel cis-regulatory regions in ecdysone responsive genes are sufficient to promote gene expression in Drosophila ovarian cells
    Samantha I McDonald, Allison N. Beachum, Taylor D. Hinnant, Amelia J. Blake, Tierra Bynum, Evan Hickman, Joseph Barnes, Kaely L. Churchill, Tamesia S. Roberts, Denise E. Zangwill et al. · 2019 · Gene Expression Patterns
  88. ModHMM: A Modular Supra-Bayesian Genome Segmentation Method
    Philipp Benner, Martin Vingron · 2019 · Journal of Computational Biology
  89. Functional annotation of breast cancer risk loci: current progress and future directions
    Shirleny Romualdo Cardoso, Andrea Gillespie, Syed Aleem Haider, Olivia Fletcher · 2021 · British Journal of Cancer
  90. Dynamic chromatin accessibility during nutritional iron overload reveals a BMP6-independent induction of cell cycle genes
    Talia Radushkevitz-Frishman, Meital Charni‐Natan, Ido Goldstein · 2023 · The Journal of Nutritional Biochemistry
  91. Epigenetic and Metabolic Regulation of Macrophages during Gout
    Isidoro Cobo, Jessica Murillo‐Saich, Mohnish Alishala, Mónica Gumá · 2023 · Gout Urate and Crystal Deposition Disease
  92. From Genotype to Phenotype: How Enhancers Control Gene Expression and Cell Identity in Hematopoiesis
    Roger Mulet-Lazaro, Ruud Delwel · 2023 · HemaSphere
  93. Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues
    Miao Yu, Nathan R. Zemke, Ziyin Chen, Ivan Jurić, Rong Hu, Ramya Raviram, Armen Abnousi, Rongxin Fang, Yanxiao Zhang, David U. Gorkin et al. · 2024 · Nature Structural & Molecular Biology
  94. CHAS infers cell type-specific signatures in bulk brain histone acetylation studies of neurological and psychiatric disorders
    Kitty B. Murphy, Yuqian Ye, Maria Tsalenchuk, Alexi Nott, Sarah J. Marzi · 2025 · Cell Reports Methods
  95. Super-enhancer-mediated circRNAs exhibit high splicing circularization diversity and transcriptional activity
    Shaodong Huang, Yulong Han, Yiran Liu, Lina Bu, Chenyang Wu, Ziyan Rao, Chuan Ye, Hansen Cheng, Yunxi Liao, Yunan Sun et al. · 2025 · Nucleic Acids Research
  96. Principles for the regulation of multiple developmental pathways by a versatile transcriptional factor, BLIMP1
    Tadahiro Mitani, Yukihiro Yabuta, Hiroshi Ohta, Tomonori Nakamura, Chika Yamashiro, Takuya Yamamoto, Mitinori Saitou, Kazuki Kurimoto · 2017 · Nucleic Acids Research
  97. Genetic associations of breast and prostate cancer are enriched for regulatory elements identified in disease-related tissues
    Hongjie Chen, Gleb Kichaev, Stephanie A. Bien, James W. MacDonald, Lu Wang, Theo K. Bammler, Paul Livermore Auer, Bogdan Paşaniuc, Sara Lindström · 2019 · Human Genetics
  98. Deciphering the Gene Regulatory Landscape Encoded in DNA Biophysical Features
    Abhijeet Pataskar, Willem Vanderlinden, Johannes Emmerig, Aditi Puri Singh, Jan Lipfert, Vijay Kumar Tiwari · 2019 · iScience
  99. NFATc1 Is a Central Mediator of EGFR-Induced ARID1A Chromatin Dissociation During Acinar Cell Reprogramming
    Zhe Zhang, Xin Wang, Feda H. Hamdan, Anna Likhobabina, Shilpa Patil, Lena Aperdannier, Madhobi Sen, Jacobe Traub, Albrecht Neeße, André Fischer et al. · 2023 · Cellular and Molecular Gastroenterology and Hepatology
  100. Enhancers and their dynamics during hematopoietic differentiation and emerging strategies for therapeutic action
    Alba Cico, Charlotte Andrieu‐Soler, Éric Soler · 2016 · FEBS Letters