The DOI matches its Crossref record; 6 of the 6 references it cites were found in a registry or an index.
In the News
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L., & Wold, B. (2008) · Nature Methods · doi:10.1038/nmeth.1226 · Cited by 13,696
<tt>BLAT</tt> —The <tt>BLAST</tt> -Like Alignment Tool
Kent, W. J. (2002) · Genome Research · doi:10.1101/gr.229202 · Cited by 8,480
High-Resolution Profiling of Histone Methylations in the Human Genome
Barski, A., Cuddapah, S., Cui, K., Roh, T.-Y., Schones, D. E., Wang, Z., Wei, G., Chepelev, I., & Zhao, K. (2007) · Cell · doi:10.1016/j.cell.2007.05.009 · Cited by 6,845
SOAP: Short oligonucleotide alignment program
Li, R., Li, Y., Kristiansen, K., & Wang, J. (2008) · Bioinformatics · doi:10.1093/bioinformatics/btn025 · Cited by 3,597
Functional metagenomic profiling of nine biomes
Dinsdale, E. A., Edwards, R. A., Hall, D., Angly, F., Breitbart, M., Brulc, J. M., Furlan, M., Desnues, C., Haynes, M., Li, L., et al. (2008) · Nature · doi:10.1038/nature06810 · Cited by 980
Fejes, A. P., Robertson, G., Bilenky, M., Varhol, R., Bainbridge, M., & Jones, S. J. M. (2008) · Bioinformatics · doi:10.1093/bioinformatics/btn305 · Cited by 272
Cited by
The population genetics of commensal Escherichia coli
Tenaillon, O., Skurnik, D., Picard, B., & Denamur, E. (2010) · Nature Reviews Microbiology · doi:10.1038/nrmicro2298 · Cited by 1,533
Measuring the effects of pesticides on bacterial communities in soil: A critical review
Imfeld, G., & Vuilleumier, S. (2012) · European Journal of Soil Biology · doi:10.1016/j.ejsobi.2011.11.010 · Cited by 323
The transcription unit architecture of the Escherichia coli genome
Cho, B.-K., Zengler, K., Qiu, Y., Park, Y. S., Knight, E. M., Barrett, C. L., Gao, Y., & Palsson, B. Ø. (2009) · Nature Biotechnology · doi:10.1038/nbt.1582 · Cited by 253
De novo assembly of short sequence reads
Paszkiewicz, K., & Studholme, D. J. (2010) · Briefings in Bioinformatics · doi:10.1093/bib/bbq020 · Cited by 204
Pires, D. E. V., Blundell, T. L., & Ascher, D. B. (2015) · Nucleic Acids Research · doi:10.1093/nar/gku966 · Cited by 91
Metadata
- Venue
- Nature Reviews Microbiology
- Published
- 2009-04
- Volume
- 7
- Issue
- 4
- Pages
- 260-261
- ISSN
- 1740-1526 (ISSN-L)
- 1740-1534
- OpenAlex
- W1519781644
- Cited by
- 320
- References
- 6
- FWCI
- 17.16
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: In the News. https://app.cochat.ai/papers/10.1038/nrmicro2122
- The paper
- In the News. (2009). Nature Reviews Microbiology. https://doi.org/10.1038/nrmicro2122
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
