Evolution of multisubunit RNA polymerases in the three domains of life
Werner, Finn, Grohmann, Dina·2011·Nature Reviews Microbiology
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- Rpb5, a subunit shared by eukaryotic RNA polymerases, cooperates with prefoldin-like Bud27/URIVeránica Martónez-Ferníndez, Francisco Navarro · 2018 · Global Medical Genetics
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- AtfA , a new factor in global regulation of transcription in A cinetobacter sppRyan Withers, Geoff P. Doherty, Matthew Jordan, Xiao Yang, Nicholas E. Dixon, Peter John Lewis · 2014 · Molecular Microbiology
- Snapshots of transcription initiationSteven Hahn, Stephen Buratowski · 2016 · Nature
- Subunits Common to RNA PolymerasesAbel Cuevas-Bermúdez, Veronica Martinez-Fernandez, Ana Isabel Garrido-Godino, Francisco Navarro · 2018 · InTech eBooks
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