Evolution of multisubunit RNA polymerases in the three domains of life
Werner, Finn, Grohmann, Dina·2011·Nature Reviews Microbiology
Cited by (431)
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- References2020 · Wiley eBooks
- Structure of mammalian RNA polymerase II elongation complex bound by α-amanitin and study of mammalian transcription termination and 3’ end processingXiangyang Liu · 2019
- RETRACTED: References2013 · Elsevier eBooks · Retracted
- Transcription | Transcription TerminationTravis J. Sanders, Craig J. Marshall, Breanna R. Wenck, Joceyln N. Selan, Thomas J. Santangelo · 2020 · Elsevier eBooks
- Transcriptional Regulation in ArchaeaKatsuhiko S. Murakami · 2013 · Springer eBooks
- Viral TranscriptionDavid L.V. Bauer, Ervin Fodor · 2020 · Elsevier eBooks
- Towards a synthetic cell: designing, testing and optimizing functional genomic modules in E. coliJoep Houkes · 2023
- Characterization of Npl3 as a 5'- and 3'- quality control factorSandra Klama · 2023
- Identifying Antibiotics Based on Structural Differences in the Conserved Allostery from Mitochondrial Respiratory Complex IVYuya NISHIDA, Yasunori Shintani · 2023 · Seibutsu Butsuri
- Structural studies of RNA polymerase II complexes with human TFIIS and capping enzymesGaurika Garg · 2023
- Intracellular ErrorsMichael Lynch · 2024 · Oxford University Press eBooks
- Structural and biochemical studies on chromatin-protein complexes in transcription initiationJulio Abril Garrido · 2024
- Targeting Liposomes Loaded with DNA Mimetics for the Directional Elimination of Tumor CellsElena I. Shramova, Galina M. Proshkina, Sergey Mikhailovich Deyev · 2023 · Биологические мембраны Журнал мембранной и клеточной биологии
- Minimization and complete loss of general transcription factor proteins in the intracellular parasite Encephalitozoon cuniculiAlana E. Belkevich, Andrew Y. Khalil, Wayne A. Decatur, Ryan J. Palumbo, Bruce A. Knutson · 2024 · Transcription
- Network modulation at stable statesBen Collins, Jason Shulman, Ethan Speakman, Hailey Martin, Jennifer Reiss, Jennifer L. Myers, Gregg Roman, Gemunu H. Gunaratne · 2024 · Physical review. E
- Archaea functional evolution and eukaryogenesisZhongYi LU, Xiuzhu Dong, YuLong SHEN, Zhirui Zeng, XinYun JING, JinJie ZHOU, Dayu Zou, Xin Dai, Zhimeng Li, Xiaowei Zheng et al. · 2024 · Scientia Sinica Vitae