Chromatin organization marks exon-intron structure
Cited by (635)
Items 501–600 of 635
- Identification, Characterization and Comparison of the Genome-Scale UTR Introns from Six Citrus SpeciesChunzhen Cheng, Xiaobao Shi, Yongyan Zhang, Bin Wang, Junwei Wu, Shizao Yang, Shaohua Wang · 2022 · Horticulturae
- Splicing of Pre ‐ m RNAYingqing Lu, Woan‐Yuh Tarn · 2010 · Wiley eBooks
- Origins and impacts of new mammalian exonsJason J. Merkin, Ping Chen, Maria S. Alexis, Sampsa Hautaniemi, Christopher B. Burge · 2014 · bioRxiv (Cold Spring Harbor Laboratory)
- Characterization of strawberry ( Fragaria vesca ) sequence genomeAo Li, Lide Chen, Zhongjie Liu, Mengjie Cui, Lingfei Shangguan, Haifeng Jia, Jinggui Fang · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- Characterization of the regulation of CD46 alternative splicingSze Jing Tang · 2016 · DR-NTU (Nanyang Technological University)
- Using Network Models to Understand Biological Signaling ArchitectureRuss White, Emily Brown Reeves, Gerald L. Fudge, Dagmar Zigáčková, Joseph E. Deweese, James P. Keener · 2025 · IEEE Transactions on Molecular Biological and Multi-Scale Communications
- RNA-binding proteins connect Exon usage to the chromatinHanah B. Robertson, Hoang T T Do, Volkhard Helms · 2025 · NAR Genomics and Bioinformatics
- HDGS-Net: nucleosome occupancy prediction based on a hybrid dilated gated separable convolutional neural networkFuquan Shi, Meizhi Wang, Zhixia Teng, Lu Cai, Guoqing Liu, Yongqiang Xing, Xiangjun Cui, Guojun Liu, Zhihua Yang, Hu Meng · 2026 · BMC Genomics
- Splicing deficiency is driven by genomic erosion in non-recombining algal mating-type chromosomesChristopher J. Condon, Andrea Galvez, Alexander Kramer, Landen Gozashti, Christopher Vollmers, Manuel Ares, Russell B Corbett-Detig · 2026 · PLoS Biology
- Omics Era in Stem Cell Research: Data Integration of Multi-regulatory LayersAna Sevilla, Benjamin Trinité, Ihor R. Lemischka · 2012 · Springer eBooks
- A bumpy road for RNA polymerase IILuciana E. Giono, Alberto Rodolfo Kornblihtt · 2015 · Nature Structural & Molecular Biology
- Notice of Retraction: Chromatin Organization in Different Types of Splicing EventsHuan Huang, Shuangxin Yu, Hongde Liu, Xiao Song Sun · 2011 · International Conference on Bioinformatics and Biomedical Engineering · Retracted
- Pulmonary remodeling in asthmaPhil Lieberman · 2010 · F1000 Medicine Reports
- Alternative splicing landscape of the Drosophila melanogaster genomeVladimir N. Babenko, Р. Б. Айтназаров, F. A. Goncharov, Igor Fyodorovich Zhimulev · 2010 · Russian Journal of Genetics
- Nucleosome deposition and DNA methylation may participate in the recognition of premature termination codon in nonsense‐mediated mRNA decayDeng‐Ke Niu, Jianli Cao · 2010 · FEBS Letters
- Exploring the influence of DNA methylation and single nucleotide polymorphisms of the Myostatin gene on growth traits in the hybrid grouper (Epinephelus fuscoguttatus (female) × Epinephelus polyphekadion (male))Liu Cao, Jun Ma, Pan Chen, Xingrong Hou, Ning Yang, Yan Lu, Hai Huang · 2024 · Frontiers in Genetics
- Nucleosome positioning is unaltered at MLH1 splice site mutations in cells derived from Lynch syndrome patientsMathew A. Sloane, Luke B. Hesson, Andrea C. Nunez, Bryony A. Thompson, Robyn Lynne Ward · 2014 · Clinical Epigenetics
- Transcriptional Regulation Functions of Nucleosome Positioning: a Survey*Hui Liu, Ziheng Zhuang, Jihong Guan, Shuigeng Zhou · 2012 · PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS
- Alternative Splicing and AgingJuan Carlos Yustis-Rubio, Juan Carlos Gómez-Verján · 2020 · Springer eBooks
- Multiplexing mechanical and translational cues on genesMartijn Zuiddam, Bahareh Shakiba, Helmut Schießel · 2022 · Biophysical Journal
- Epigenetic modifications and alternative pre-mRNA splicing in cancerPooja Yadav, Madhura R. Pandkar, Sanjeev Shukla · 2023 · Elsevier eBooks
- H3.3-G34W in giant cell tumor of bone functionally aligns with the exon choice repressor hnRNPA1L2Eunbi Lee, Yoon Jung Park, Anders M. Lindroth · 2024 · Cancer Gene Therapy
- An Overview of Gene RegulationAndrew Harrison, Hugh P. Shanahan · 2013 · Springer eBooks
- The role of polyhomeotic in polycomb group-mediatedregulation of the tumour suppressor P16INK4AL.A. de Breed · 2010 · UCL Discovery (University College London)
- First intron length in mammals is associated with 5’ exon skipping rateSeung Gu Park, Sridhar S. Hannenhalli · 2015 · bioRxiv (Cold Spring Harbor Laboratory)
- Study of evolution and architecture of minimal intronsLuiza de Rezende Faria · 2020 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
- The Function of the ASH1L Histone Methyltransferase in Cancer: A Chemical Biology ApproachDavid S. Rogawski · 2016 · Deep Blue (University of Michigan)
- Alternative splicing regulates the physiological adaptation of the mouse hind limb postural and phasic muscles to microgravityMason Henrich, Pin Ha, John S. Adams, Chia B. Soo, Kang Ting, Louis Stodieck, Rene F. Chun · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Changes in DNA Methylation During Anoxia and Reoxygenation in Crucian Carp BrainMagdalena Winklhofer, Øivind Andersen, Sjannie Lefevre · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Studies of the proteins involved in the formation of early spliceosomal complexesPaul A. Smith · 2015 · Leicester Research Archive (University of Leicester)
- Processing of mRNA and Quality ControlUte Schmidt, Édouard Bertrand · 2011 · Wiley eBooks
- Integration of Splicing with Nuclear and Cellular EventsAparna K. Sapra, Karla M. Neugebauer · 2012 · Wiley eBooks
- Transcriptome wide characterization of target sites and alternative splicing regulation mediated by RBM10Yongbo Wang · 2013 · Universitätsbibliothek der FU Berlin Hochschulschriftenstelle u. Dokumentenserver
- Evolutionary Genetics of Dictyostelids: Cryptic Species, Sociality and SexSara E. Kalla · 2011 · Rice Research Repository (Rice University)
- Expressão de RNAs não codificadores intrônicos longos em linhagens celulares humanas e o seu controle epigenético por metilação do DNALauren Camargo · 2012 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
- Nuclear visions enhanced: chromatin structure, organization and dynamicsEran Meshorer, Harald O. Herrmann, Ivan Raška · 2011 · EMBO Reports
- A peak for exonsMary R. Muers · 2009 · Nature Reviews Genetics
- A computational exploration of gene regulation by nucleosome positionJustin A. Fincher, Gary Tyson, Jonathan H. Dennis · 2010 · ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB)
- Quantitatively Assessing the Effects of Regulatory Factors on Nucleosome Dynamics by Multiple Kernel LearningBich Hai Ho, Ngoc Tu Le, Tu Bao Ho · 2010 · RIVF International Conference on Computing and Communication Technologies (RIVF)
- Quantitatively assessing the effects of regulatory factors on nucleosome dynamics by multiple kernel learningBich Hai Ho, Ngoc Tu Le, Tu Bao Ho · 2012 · Journal of Ambient Intelligence and Humanized Computing
- Drosophila melanogaster genome: Correlation of chromatin state with splicing and transcription regulationVladimir N. Babenko, Vladimir Matvienko, Ivan A. Zykov · 2012 · Russian Journal of Genetics Applied Research
- Snf2l Regulates Foxg1 Expression to Control Cortical Progenitor Cell Proliferation and DifferentiationChelsea McGregor · 2012 · uO Research (University of Ottawa)
- SWITCH TO THE L ISOFORM OF THE MAP/MICROTUBULE AFFINITY-REGULATING KINASE 4 (MARK4) GENE, MAINLY EXPRESSED IN HUMAN GLIOMA, VIA PRE-MRNA ALTERNATIVE SPLICING MODULATED BY POLYPYRIMIDINE TRACT-BINDING PROTEIN (PTB)Laura Fontana · 2014 · Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)
- Biochemical and structural studies of dosage compensation members : MSL1, MSL3, and MOF from Drosophila melanogasterKent Conrad Klemmer · 2010 · University Library - University of Saskatchewan (University of Saskatchewan)
- Plasmodium falciparum: Rekonstitution von Nukleosomen und die Analyse der Dynamik und StrukturGernot Längst, Naturwissenschaftlichen Fakultät · 2014
- Interplay of chromatin remodeling, transcriptional regulation, and nuclear organizationBabett Steglich · 2015 · Figshare
- Three distinct velocities of elongating RNA polymerase define exons and intronsQianqian Ye, Yoon Jung Kim, Hongyu Zhao, Tae Hoon Kim · 2016 · bioRxiv (Cold Spring Harbor Laboratory)
- CDK12 IS A NOVEL ONCOGENE WITH CLINICAL AND PATHOGENETIC RELEVANCE IN BREAST CANCERAngelo Taglialatela · 2013 · Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)
- An epigenetic view on alternative splicingGabriele Fontana, Aurora Rigamonti, Silvia M.L. Barabino · 2013 · BOA (University of Milano-Bicocca)
- Epigenetic Regulation of Replication-Dependent Histone mRNA 3 End ProcessingJudith Pirngruber · 2010 · eDiss (Georg-August-Universität Göttingen)
- Role of Epigenetic Factors in RNA SplicingWei Chen · 2011
- Computational Approaches to Mine Publicly Available DatabasesRodger B. Voelker, William A. Cresko, J. Andrew Berglund · 2014 · Methods in molecular biology
- Interconnections between transcription and pre-mRNA splicingOksana Gonchar · 2016 · Figshare
- Targeting Pre-mRNA Processing in CancerThomas R. Webb, Stefan Stamm · 2017 · Elsevier eBooks
- The Role of CHD1 during Mesenchymal Stem Cell DifferentiationSimon J. Baumgart · 2017 · eDiss (Georg-August-Universität Göttingen)
- INVESTIGATING THE PRESENCE OF MITOCHONDRIAL DNA METHYLATION, ITS ALTERATION AND ASSOCIATION WITH MITOCHONDRIAL TRANSCRIPTION AND MITOCHONDRIAL FUNCTIONNairita Roy · 2015 · KU ScholarWorks (University of Kansas)
- Systematic analysis of heterochromatin modification readoutNadin Zimmermann · 2017 · eDiss (Georg-August-Universität Göttingen)
- Epigenetic regulators sculpt the plastic brainJi‐Song Guan, Hong Bo Xie, Sanxiong Liu · 2017 · Frontiers in Biology
- Splicing and Alternative Splicing Impact on Gene DesignBeatrix Suess, Katrin Kemmerer, Julia E. Weigand · 2018 · Wiley eBooks
- Identificação e caracterização de regiões de eucromatina associadas à regulação da expressão gênica e à gordura intramuscular em bovinos da raça NeloreNatalia S. Morosini · 2018 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
- Secondary structure of pre-mRNA introns for genes in the 15q11-12 locus. Mapping of functionally significant motives for RNA-binding proteins and nucleosome positioning signalsViya B. Fedoseyeva, Irina A. Zharinova, Alexander A. Alexandrov · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- Gene expression profiling in autoimmune diseases : a story of ups and downsMiranda Houtman · 2018 · Figshare
- LincRNAs fisicamente associados ao receptor de andrógeno modificam o perfil de marcas da cromatina vizinha e alteram a expressão gênica localLucas Ferreira da Silva · 2019 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
- Basic Concepts of GeneticsPál Perge, Péter Igaz · 2019 · Experientia supplementum
- Studying Nucleosome Positioning, DNA Methylation, and Other Epigenetic Factors Using Genomic ApproachesRamakrishna K. Chodavarapu · 2012 · eScholarship (California Digital Library)
- A Deep Learning approach predicts the impact of point mutations in intronic flanking regions on micro-exon splicing definitionLucas F. daSilva, Ana Carolina Tahira, Vinícius Mesel, Sergio Verjovski‐Almeida · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
- Chromatin plasticity in pluripotent and cancer stem cellsAlva Biran, Eran Meshorer · 2020 · Elsevier eBooks
- Involvement of Reversible Protein Methylation in 13-Lined Ground Squirrel Hibernation.Alexander J. Watts · 2016 · Carleton University's Institutional Repository (MacOdrum Library, Carleton University)
- Role of SWI/SNF in regulating pre-mRNA processing in Drosophila melanogasterAnu Tyagi · 2012
- Insights into the Regulatory Activities of Chromatin Through Computational Analyses of Whole-Genome DataStephen A. Hoang · 2013
- Ligation-mediated Molecular Analysis of Influenza Subtypes, Splicing and Protein GlycosylationTim Conze · 2010 · Uppsala University Publications (Uppsala University)
- When chromatin structure meets CD6 exon 5 Alternative Splicing: an encounter triggered by T cell activationVânia Raquel Gomes Glória · 2014 · Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)
- Grand Celebration: 10th Anniversary of the Human Genome ProjectPabulo Henrique Rampelotto, John Burn, Lupski, James, Nelson, Karen · 2016 · MDPI eBooks
- Transcription Dynamics: Cellular Automaton Model of Polymerase Dynamics for EukaryotesYoichi Nakata, Yoshihiro Ohta, Youichiro Wada · 2021 · Theoretical biology
- Correction: Extensive Alternative Splicing of the Repressor Element Silencing Transcription Factor Linked to CancerGuo‐Lin Chen, Gregory M. Miller · 2014 · PLoS ONE
- Optical Beam Steering Using a 2D MEMS ScannerYves Ptremand, P.-A. Clerc, Marc Epitaux, R. Hauffe, Wilfried Noell, N.F. de · 2010 · InTech eBooks
- MethylomesPao‐Yang Chen, Matteo A. Pellegrini · 2012 · Encyclopedia of Molecular Cell Biology and Molecular Medicine
- Faculty Opinions recommendation of A map of nucleosome positions in yeast at base-pair resolution.Yamini Dalal · 2012 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Faculty Opinions recommendation of Insights into Nucleosome Organization in Mouse Embryonic Stem Cells through Chemical Mapping.Robert H. Blelloch · 2018 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Faculty Opinions recommendation of Single-molecule long-read sequencing reveals the chromatin basis of gene expression.Sheng Zhong · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Data from Holding on to Junk Bonds: Intron Retention in Cancer and TherapyGeoffray Monteuuis, Ulf Schmitz, Veronika Petrova, Padraic S. Kearney, John E.J. Rasko · 2023
- Data from Exon 11 Skipping of E-Cadherin RNA Downregulates Its Expression in Head and Neck Cancer CellsSanjai Sharma, Wei Liao, Xiaofeng C. Zhou, David T. Wong, Alan K. Lichtenstein · 2023
- Reclassification of Splicing Gene Variants in Hereditary Cancer: Cases Report and Literature ReviewDimitra Bouzarelou, Κωνσταντίνος Αγιαννιτόπουλος, Georgios Tsaousis, Eirini Papadopoulou, George Nasioulas · 2023 · In Vivo
- Additional file 2 of NucHMM: a method for quantitative modeling of nucleosome organization identifying functional nucleosome states distinctly associated with splicing potentialityKun Fang, Tianbao Li, Yufei Huang, Victor X. Jin · 2021 · Figshare
- Additional file 4 of NucHMM: a method for quantitative modeling of nucleosome organization identifying functional nucleosome states distinctly associated with splicing potentialityKun Fang, Tianbao Li, Yufei Huang, Victor X. Jin · 2021 · Figshare
- Additional file 3 of NucHMM: a method for quantitative modeling of nucleosome organization identifying functional nucleosome states distinctly associated with splicing potentialityKun Fang, Tianbao Li, Yufei Huang, Victor X. Jin · 2021 · Figshare
- Evolutionary trends of alternative splicingRebeca de la Fuente, Wladimiro Dı́az-Villanueva, Vicente Arnau, Andrés Moyá · 2024 · eLife
- Reviewer #1 (Public Review): Evolutionary trends of alternative splicing2024 · eLife
- Colocalised Genetic Associations Reveal Alternative Splicing Variants as Candidate Causal Links for Breast Cancer Risk in 10 LociAndré Besouro-Duarte, Beatriz Carrasqueiro, Sofia Sousa, Joana M. Xavier, Ana-Teresa Maia · 2024 · Cancers
- Búsqueda de marcadores predictivos de diabetes y prediabetes a través de la identificación de genes diferencialmente metilados en islotes y leucocitos de ratas sometidas a una dieta rica en fructosaLucía Ahrtz · 2024 · El Servicio de Difusión de la Creación Intelectual (National University of La Plata)
- Intron turnover of slc26a1 and slc26a2 and convergence of intron insertion sitesKota Torii, Chihiro Ota, Ayumi Nagashima, Masaki Kajikawa, Akira Kato · 2025 · Scientific Reports
- RNA editing sites in coding sequences of ABO blood group allelesSupriyo Chakraborty, Deepika Sharma, Joydeep Chandra Das, Srinjay Kumar Bharadaj, Stella Bharadaj · 2025 · Human Immunology
- CpG-induced regions associated compositional stratification of human essential proteins through mathematical genomicsShipra Singh, Kharerin Hungyo, Sk. Sarif Hassan, Vladimir Nikolaevich Uversky · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Decoding the Structural Layer of Transcriptional Regulation : Computational Analyses of Chromatin and Chromosomal AberrationsRobin Andersson · 2010 · KTH Publication Database DiVA (KTH Royal Institute of Technology)
- Dynamics of epigenetic reader proteins and their interplay with expression in developmentSiba Shanak · 2014 · Publications of the UdS (Saarland University)
- Dynamic histone modifications at the promoters of Hox genes in embryonic stem cellsHannah Stower · 2009 · University of Birmingham Institutional Research Archive (University of Birmingham)
- Additional file 4 of CREaTor: zero-shot cis-regulatory pattern modeling with attention mechanismsLi, Yongge, Ju, Fusong, Chen, Zhiyuan, Yiming Qu, Xia, Huanhuan, He, Liang, Wu, Lijun, Zhu, Jianwei, Shao, Bin, Deng, Pan · 2024 · Figshare
- Additional file 1 of High frequency of intron retention and clustered H3K4me3-marked nucleosomes in short first introns of human long non-coding RNAsPinki Dey, John S. Mattick · 2021 · Figshare
- Additional file 6 of Alternative splicing diversifies the skeletal muscle transcriptome during prolonged spaceflightHenrich, Mason, Pin Ha, Wang, Yuanyuan, Ting, Kang, Louis Stodieck, Chia B. Soo, John S. Adams, Chun, Rene · 2022 · Figshare
- Additional file 2 of CREaTor: zero-shot cis-regulatory pattern modeling with attention mechanismsLi, Yongge, Ju, Fusong, Chen, Zhiyuan, Yiming Qu, Xia, Huanhuan, He, Liang, Wu, Lijun, Zhu, Jianwei, Shao, Bin, Deng, Pan · 2024 · Figshare