Repulsive guidance molecule is a structural bridge between neogenin and bone morphogenetic protein
Open accessAbstract
Repulsive guidance molecules (RGMs) control crucial processes including cell motility, adhesion, immune-cell regulation and systemic iron metabolism. RGMs signal via the neogenin (NEO1) and the bone morphogenetic protein (BMP) pathways. Here, we report crystal structures of the N-terminal domains of all human RGM family members in complex with the BMP ligand BMP2, revealing a new protein fold and a conserved BMP-binding mode. Our structural and functional data suggest a pH-linked mechanism for RGM-activated BMP signaling and offer a rationale for RGM mutations causing juvenile hemochromatosis. We also determined the crystal structure of the ternary BMP2-RGM-NEO1 complex, which, along with solution scattering and live-cell super-resolution fluorescence microscopy, indicates BMP-induced clustering of the RGM-NEO1 complex. Our results show how RGM acts as the central hub that links BMP and NEO1 and physically connects these fundamental signaling pathways.
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RGM proteins have high affinity for BMPs and can enhance BMP signaling in ways still incompletely understood but involving formation and internalization of a cell surface complex in which RGMb forms a bridge between BMP ligands and Neogenin (Neo).
“RGM proteins have high affinity for BMPs and can enhance BMP signaling in ways still incompletely understood but involving formation and internalization of a cell surface complex in which RGMb forms a bridge between BMP ligands and Neogenin (Neo) (45, 46).”
From Agouti and BMP signaling drive a naturally occurring fate conversion of melanophores to leucophores in zebrafish (2025) · cites this paper as [46]
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Bone morphogenetic protein signaling by hemojuvelin regulates hepcidin expression
Babitt, J. L., Huang, F. W., Wrighting, D. M., Xia, Y., Sidis, Y., Samad, T. A., Campagna, J. A., Chung, R. T., Schneyer, A. L., Woolf, C. J., et al. (2006) · Nature Genetics · doi:10.1038/ng1777 · Cited by 1,026 · see citing works
Mutations in HFE2 cause iron overload in chromosome 1q–linked juvenile hemochromatosis
Papanikolaou, G., Samuels, M. E., Ludwig, E. H., MacDonald, M. L. E., Franchini, P. L., Dubé, M.-P., Andres, L., MacFarlane, J., Sakellaropoulos, N., Politou, M., et al. (2004) · Nature Genetics · doi:10.1038/ng1274 · Cited by 974 · see citing works
Accurate assessment of mass, models and resolution by small-angle scattering
Rambo, R. P., & Tainer, J. A. (2013) · Nature · doi:10.1038/nature12070 · Cited by 750 · see citing works
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Research works printed but not linked: 90
- [1]Yamashita T Mueller BK Hata K Neogenin and repulsive guidance molecule signaling in the central nervous system Curr Opin Neurobiol 2007 17 29 34 17169551
- [2]Mirakaj V Repulsive guidance molecule-A (RGM-A) inhibits leukocyte migration and mitigates inflammation Proc Natl Acad Sci U S A 2011 108 6555 60 21467223 PMC3080996
- [3]Muramatsu R RGMa modulates T cell responses and is involved in autoimmune encephalomyelitis Nat Med 2011 17 488 94 21423182
- [4]Li VS Frequent inactivation of axon guidance molecule RGMA in human colon cancer through genetic and epigenetic mechanisms Gastroenterology 2009 137 176 87 19303019
- [6]Monnier PP RGM is a repulsive guidance molecule for retinal axons Nature 2002 419 392 5 12353034
- [7]Rajagopalan S Neogenin mediates the action of repulsive guidance molecule Nat Cell Biol 2004 6 756 62 15258590
- [8]Matsunaga E Chedotal A Repulsive guidance molecule/neogenin: a novel ligand-receptor system playing multiple roles in neural development Dev Growth Differ 2004 46 481 6 15610137
- [9]Bell CH Structure of the Repulsive Guidance Molecule (RGM)–Neogenin Signaling Hub Science 2013 PMC4730555 23744777
- [11]Samad TA DRAGON, a bone morphogenetic protein co-receptor J Biol Chem 2005 280 14122 9 15671031
- [12]Babitt JL Repulsive Guidance Molecule (RGMa), a DRAGON Homologue, Is a Bone Morphogenetic Protein Co-receptor J Biol Chem 2005 280 29820 29827 15975920
- [13]Lee DH Neogenin inhibits HJV secretion and regulates BMP-induced hepcidin expression and iron homeostasis Blood 2010 115 3136 45 20065295 PMC2858467
- [14]Zhang AS Yang F Wang J Tsukamoto H Enns CA Hemojuvelin-neogenin interaction is required for bone morphogenic protein-4-induced hepcidin expression J Biol Chem 2009 284 22580 9 19564337 PMC2755665
- [15]Massague J TGFbeta signalling in context Nat Rev Mol Cell Biol 2012 13 616 30 22992590 PMC4027049
- [16]Sieber C Kopf J Hiepen C Knaus P Recent advances in BMP receptor signaling Cytokine Growth Factor Rev 2009 20 343 55 19897402
- [17]Bragdon B Bone morphogenetic proteins: a critical review Cell Signal 2011 23 609 20 20959140
- [18]Shi Y Massague J Mechanisms of TGF-beta signaling from cell membrane to the nucleus Cell 2003 113 685 700 12809600
- [19]Feng XH Derynck R Specificity and versatility in tgf-beta signaling through Smads Annu Rev Cell Dev Biol 2005 21 659 93 16212511
- [20]Derynck R Zhang YE Smad-dependent and Smad-independent pathways in TGF-beta family signalling Nature 2003 425 577 84 14534577
- [21]Di Guglielmo GM Le Roy C Goodfellow AF Wrana JL Distinct endocytic pathways regulate TGF-beta receptor signalling and turnover Nat Cell Biol 2003 5 410 21 12717440
- [22]Hartung A Different Routes of Bone Morphogenic Protein (BMP) Receptor Endocytosis Influence BMP Signaling Mol Cell Biol 2006 26 7791 7805 16923969 PMC1636853
- [23]Heining E Bhushan R Paarmann P Henis YI Knaus P Spatial segregation of BMP/Smad signaling affects osteoblast differentiation in C2C12 cells PLoS One 2011 6 e25163 21998639 PMC3187766
- [24]Alborzinia H Quantitative kinetics analysis of BMP2 uptake into cells and its modulation by BMP antagonists J Cell Sci 2013 126 117 127 23077176
- [25]Shi W Endofin acts as a Smad anchor for receptor activation in BMP signaling J Cell Sci 2007 120 1216 24 17356069
- [26]Brazil DP Church RH Surae S Godson C Martin F BMP signalling: agony and antagony in the family Trends Cell Biol 2015 25592806
- [27]Xia Y Dragon (repulsive guidance molecule b) inhibits IL-6 expression in macrophages J Immunol 2011 186 1369 76 21187450 PMC3670585
- [28]Lee PL Beutler E Rao SV Barton JC Genetic abnormalities and juvenile hemochromatosis: mutations of the HJV gene encoding hemojuvelin Blood 2004 103 4669 71 14982867
- [29]Lok CY Iron overload in the Asian community Blood 2009 114 20 5 19342478
- [30]Parrow NL Fleming RE Bone morphogenetic proteins as regulators of iron metabolism Annu Rev Nutr 2014 34 77 94 24995692 PMC7713507
- [31]Yang F West AP Jr. Allendorph GP Choe S Bjorkman PJ Neogenin interacts with hemojuvelin through its two membrane-proximal fibronectin type III domains Biochemistry 2008 47 4237 45 18335997 PMC2819367
- [32]Wu Q Sun CC Lin HY Babitt JL Repulsive guidance molecule (RGM) family proteins exhibit differential binding kinetics for bone morphogenetic proteins (BMPs) PLoS One 2012 7 e46307 23029472 PMC3459908
- [33]Xiong JP Crystal structure of the extracellular segment of integrin alpha Vbeta3 in complex with an Arg-Gly-Asp ligand Science 2002 296 151 5 11884718
- [34]Camus LM Lambert LA Molecular evolution of hemojuvelin and the repulsive guidance molecule family J Mol Evol 2007 65 68 81 17593421
- [35]Kuns-Hashimoto R Kuninger D Nili M Rotwein P Selective binding of RGMc/hemojuvelin, a key protein in systemic iron metabolism, to BMP-2 and neogenin Am J Physiol Cell Physiol 2008 294 C994 C1003 18287331
- [36]Roetto A Mutant antimicrobial peptide hepcidin is associated with severe juvenile hemochromatosis Nat Genet 2003 33 21 2 12469120
- [37]Weinstein DA Inappropriate expression of hepcidin is associated with iron refractory anemia: implications for the anemia of chronic disease Blood 2002 100 3776 81 12393428
- [38]Pagani A Silvestri L Nai A Camaschella C Hemojuvelin N-terminal mutants reach the plasma membrane but do not activate the hepcidin response Haematologica 2008 93 1466 72 18827264
- [39]Allendorph GP Vale WW Choe S Structure of the ternary signaling complex of a TGF-beta superfamily member Proc Natl Acad Sci U S A 2006 103 7643 8 16672363 PMC1456805
- [40]Weber D A silent H-bond can be mutationally activated for high-affinity interaction of BMP-2 and activin type IIB receptor BMC Struct Biol 2007 7 6 17295905 PMC1802081
- [41]Townson SA Specificity and structure of a high affinity activin receptor-like kinase 1 (ALK1) signaling complex J Biol Chem 2012 287 27313 25 22718755 PMC3431715
- [42]Heinecke K Receptor oligomerization and beyond: a case study in bone morphogenetic proteins BMC Biology 2009 7 59 19735544 PMC2749821
- [43]Keller S Nickel J Zhang J-L Sebald W Mueller TD Molecular recognition of BMP-2 and BMP receptor IA Nat Struct Mol Biol 2004 11 481 488 15064755
- [44]Korchynskyi O ten Dijke P Identification and functional characterization of distinct critically important bone morphogenetic protein-specific response elements in the Id1 promoter J Biol Chem 2002 277 4883 91 11729207
- [45]Rossy J Owen DM Williamson DJ Yang Z Gaus K Conformational states of the kinase Lck regulate clustering in early T cell signaling Nat Immunol 2013 14 82 9 23202272
- [46]Zhou Z Neogenin regulation of BMP-induced canonical Smad signaling and endochondral bone formation Dev Cell 2010 19 90 102 20643353 PMC2924163
- [47]Xia Y Babitt JL Sidis Y Chung RT Lin HY Hemojuvelin regulates hepcidin expression via a selective subset of BMP ligands and receptors independently of neogenin Blood 2008 111 5195 204 18326817 PMC2384142
- [48]Tassew NG Modifying lipid rafts promotes regeneration and functional recovery Cell Rep 2014 8 1146 59 25127134
- [49]Vieira AV Lamaze C Schmid SL Control of EGF receptor signaling by clathrin-mediated endocytosis Science 1996 274 2086 9 8953040
- [50]Le Roy C Wrana JL Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling Nat Rev Mol Cell Biol 2005 6 112 26 15687999
- [52]Karplus PA Diederichs K Linking crystallographic model and data quality Science 2012 336 1030 3 22628654 PMC3457925
- [53]Evans PR Murshudov GN How good are my data and what is the resolution? Acta Crystallogr D Biol Crystallogr 2013 69 1204 14 23793146 PMC3689523
- [54]Bell CH Structure of the Repulsive Guidance Molecule (RGM)–Neogenin Signaling Hub Science 2013 341 77 80 23744777 PMC4730555
- [55]Aricescu AR Lu W Jones EY A time- and cost-efficient system for high-level protein production in mammalian cells Acta Crystallogr D Biol Crystallogr 2006 62 1243 1250 17001101
- [56]Zhao Y Automation of large scale transient protein expression in mammalian cells J Struct Biol 2011 175 209 215 21571074 PMC3477309
- [57]Chang VT Glycoprotein structural genomics: solving the glycosylation problem Structure 2007 15 267 273 17355862 PMC1885966
- [58]von Einem S Schwarz E Rudolph R A novel TWO-STEP renaturation procedure for efficient production of recombinant BMP-2 Protein Expr Purif 2010 73 65 69 20302941
- [59]Trombetta ES Parodi AJ Quality control and protein folding in the secretory pathway Annu Rev Cell Dev Biol 2003 19 649 676 14570585
- [60]Walter TS A procedure for setting up high-throughput nanolitre crystallization experiments. Crystallization workflow for initial screening, automated storage, imaging and optimization Acta Crystallogr D Biol Crystallogr 2005 61 651 657 15930615 PMC7159505
- [61]Mayo CJ Benefits of automated crystallization plate tracking, imaging, and analysis Structure 2005 13 175 182 15698562
- [62]Otwinowski Z Minor W Processing of X-ray diffraction data collected in oscillation mode Methods Enzymol 1997 276 307 326 27754618
- [63]Evans P Scaling and assessment of data quality Acta Crystallographica Section D 2006 62 72 82 16369096
- [64]Kabsch W Automatic indexing of rotation diffraction patterns Journal of Applied Crystallography 1988 21 67 72
- [65]Kabsch W Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants Journal of Applied Crystallography 1993 26 795 800
- [66]Leslie AGW The integration of macromolecular diffraction data Acta Crystallogr D Biol Crystallogr 2006 62 48 57 16369093
- [67]Sauter NK Grosse-Kunstleve RW Adams PD Robust indexing for automatic data collection Journal of Applied Crystallography 2004 37 399 409 20090869 PMC2808709
- [68]Zhang Z Sauter NK van den Bedem H Snell G Deacon AM Automated diffraction image analysis and spot searching for high-throughput crystal screening Journal of Applied Crystallography 2006 39 112 119
- [69]McCoy AJ Phaser crystallographic software Journal of Applied Crystallography 2007 40 658 674 19461840 PMC2483472
- [70]Scheufler C Sebald W Hulsmeyer M Crystal structure of human bone morphogenetic protein-2 at 2.7 A resolution J Mol Biol 1999 287 103 115 10074410
- [71]Cowtan K Recent developments in classical density modification Acta Crystallographica Section D 2010 66 470 478 PMC2852311 20383000
- [72]Cowtan K The Buccaneer software for automated model building. 1. Tracing protein chains Acta Crystallogr D Biol Crystallogr 2006 62 1002 1011 16929101
- [73]Emsley P Cowtan K Coot: model-building tools for molecular graphics Acta Crystallogr D Biol Crystallogr 2004 60 2126 2132 15572765
- [74]BUSTER, version 2.8.0. v. 2.8.0 2011 Cambridge
- [75]Adams PD PHENIX: a comprehensive Python-based system for macromolecular structure solution Acta Crystallographica Section D 2010 66 213 221 PMC2815670 20124702
- [76]Davis IW MolProbity: all-atom contacts and structure validation for proteins and nucleic acids Nucleic Acids Res 2007 35 W375 383 17452350 PMC1933162
- [77]Baker NA Sept D Joseph S Holst MJ McCammon JA Electrostatics of nanosystems: Application to microtubules and the ribosome Proceedings of the National Academy of Sciences 2001 98 10037 10041 PMC56910 11517324
- [79]Krissinel E Henrick K Inference of macromolecular assemblies from crystalline state J Mol Biol 2007 372 774 797 17681537
- [80]Pernot P Upgraded ESRF BM29 beamline for SAXS on macromolecules in solution J Synchrotron Radiat 2013 20 660 664 23765312 PMC3943554
- [81]Petoukhov MV New developments in the ATSAS program package for small-angle scattering data analysis J Appl Crystallogr 2012 45 342 350 25484842 PMC4233345
- [83]Leaver-Fay A ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules Methods Enzymol 2011 487 545 574 21187238 PMC4083816
- [84]Eswar N Tools for comparative protein structure modeling and analysis Nucleic Acids Res 2003 31 3375 3380 12824331 PMC168950
- [85]Weinkam P Pons J Sali A Structure-based model of allostery predicts coupling between distant sites Proc Natl Acad Sci U S A 2012 109 4875 4880 22403063 PMC3324024
- [86]Pelikan M Hura GL Hammel M Structure and flexibility within proteins as identified through small angle X-ray scattering Gen Physiol Biophys 2009 28 174 189 19592714 PMC3773563
- [87]Schneidman-Duhovny D Hammel M Tainer JA Sali A Accurate SAXS profile computation and its assessment by contrast variation experiments Biophys J 2013 105 962 974 23972848 PMC3752106
- [88]Guttman M Weinkam P Sali A Lee KK All-atom ensemble modeling to analyze small-angle x-ray scattering of glycosylated proteins Structure 2013 21 321 331 23473666 PMC3840220
- [89]Johnsson B Löfås S Lindquist G Immobilization of proteins to a carboxymethyldextran-modified gold surface for biospecific interaction analysis in surface plasmon resonance sensors Analytical Biochemistry 1991 198 268 277 1724720
- [90]Herrera B Inman GJ A rapid and sensitive bioassay for the simultaneous measurement of multiple bone morphogenetic proteins. Identification and quantification of BMP4, BMP6 and BMP9 in bovine and human serum BMC Cell Biol 2009 10 20 19298647 PMC2663541
- [91]Korchynskyi O ten Dijke P Identification and functional characterization of distinct critically important bone morphogenetic protein-specific response elements in the Id1 promoter J Biol Chem 2002 277 4883 4891 11729207
- [94]Rossy J Owen DM Williamson DJ Yang Z Gaus K Conformational states of the kinase Lck regulate clustering in early T cell signaling Nat Immunol 2013 14 82 89 23202272
- [95]Owen DM PALM imaging and cluster analysis of protein heterogeneity at the cell surface J Biophotonics 2010 3 446 454 20148419
- [97]Owen DM Williamson D Magenau A Gaus K Optical techniques for imaging membrane domains in live cells (live-cell palm of protein clustering) Methods Enzymol 2012 504 221 235 22264537
- [98]Williamson DJ Pre-existing clusters of the adaptor Lat do not participate in early T cell signaling events Nat Immunol 2011 12 655 662 21642986
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- Authors
- Healey, E. G., Bishop, B., Elegheert, J., Bell, C. H., Padilla-Parra, S., & Siebold, C.
- Affiliations
- Centre for Human Genetics (GB)
- Corresponding author
- Siebold, Christian
- Venue
- Nature Structural & Molecular Biology
- Published
- 2015-05-04
- Volume
- 22
- Issue
- 6
- Pages
- 458-465
- ISSN
- 1545-9985 (ISSN-L)
- 1545-9993
- PMC
- PMC4456160
- OpenAlex
- W2170758920
- Cited by
- 112
- References
- 3
- Citations by year
- 2026: 9 · 2025: 10 · 2024: 11 · 2023: 3 · 2022: 12 · 2021: 13 · 2020: 8 · 2019: 7 · 2018: 7 · 2017: 16 · 2016: 12 · 2015: 4
- FWCI
- 5.13
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Structural & Molecular Biology (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Wellcome Trust (101584MA, 097301/Z/11/Z, 090532/Z/09/Z)
- Cancer Research UK (A14414, C20724/A14414, 14414)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › TGF-β signaling in diseases
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Axon Guidance and Neuronal Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Keywords
- repulsive guidance molecules, neogenin, bone morphogenetic proteins, BMP-2, BMP signaling, protein crystal structure, juvenile hemochromatosis, protein clustering, cell motility, cell adhesion
- MeSH terms
- Humans, Membrane Proteins, Models, Molecular, Protein Binding, Protein Conformation, Cell Adhesion Molecules, Neuronal, Crystallography, X-Ray, Bone Morphogenetic Protein 2, Protein Multimerization
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