The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.
Penaeid shrimp genome provides insights into benthic adaptation and frequent molting
Open accessAbstract
Crustacea, the subphylum of Arthropoda which dominates the aquatic environment, is of major importance in ecology and fisheries. Here we report the genome sequence of the Pacific white shrimp Litopenaeus vannamei, covering ~1.66 Gb (scaffold N50 605.56 Kb) with 25,596 protein-coding genes and a high proportion of simple sequence repeats (>23.93%). The expansion of genes related to vision and locomotion is probably central to its benthic adaptation. Frequent molting of the shrimp may be explained by an intensified ecdysone signal pathway through gene expansion and positive selection. As an important aquaculture organism, L. vannamei has been subjected to high selection pressure during the past 30 years of breeding, and this has had a considerable impact on its genome. Decoding the L. vannamei genome not only provides an insight into the genetic underpinnings of specific biological processes, but also provides valuable information for enhancing crustacean aquaculture.
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Cites
Fast and accurate short read alignment with Burrows-Wheeler transform
Li, H., & Durbin, R. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp324 · Cited by 58,607
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
Li, L., Stoeckert, C. J., & Roos, D. S. (2003) · Genome Research · doi:10.1101/gr.1224503 · Cited by 5,707
A fast, lock-free approach for efficient parallel counting of occurrences of k -mers
Marçais, G., & Kingsford, C. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btr011 · Cited by 4,661
Whole-genome resequencing reveals loci under selection during chicken domestication
Rubin, C.-J., Zody, M. C., Eriksson, J., Meadows, J. R. S., Sherwood, E., Webster, M. T., Jiang, L., Ingman, M., Sharpe, T., Ka, S., et al. (2010) · Nature · doi:10.1038/nature08832 · Cited by 1,138
Cited by
The Two NF-κB Pathways Regulating Bacterial and WSSV Infection of Shrimp
Li, C., Wang, S., & He, J. (2019) · Frontiers in Immunology · doi:10.3389/fimmu.2019.01785 · Cited by 230
Wang, Z.-A., Zheng, J., Yang, L., Zuo, H., Niu, S., Weng, S., He, J., & Xu, X. (2021) · Aquaculture · doi:10.1016/j.aquaculture.2021.736910 · Cited by 14
Wnt5b plays a negative role in antibacterial response in Pacific white shrimp Penaeus vannamei
Yang, L., Wang, Z.-A., Zuo, H., Guo, Z., Weng, S., He, J., & Xu, X. (2022) · Developmental & Comparative Immunology · doi:10.1016/j.dci.2022.104411 · Cited by 12
Integrase-associated niche differentiation of endogenous large DNA viruses in crustaceans
Kawato, S., Nozaki, R., Kondo, H., & Hirono, I. (2024) · Microbiology Spectrum · doi:10.1128/spectrum.00559-23 · Cited by 9
Metadata
- Authors
- Zhang, X., Yuan, J., Sun, Y., Li, S., Gao, Y., Yu, Y., Liu, C., Wang, Q., Lv, X., Zhang, X., Ma, K. Y., Wang, X., Lin, W., Wang, L., Zhu, X., Zhang, C., Zhang, J., Jin, S., Yu, K., Kong, J., Xu, P., Chen, J., Zhang, H., Sorgeloos, P., Sagi, A., Alcivar-Warren, A., Liu, Z., Wang, L., Ruan, J., Chu, K. H., Liu, B., Li, F., & Xiang, J.
- Venue
- Nature Communications
- Published
- 2019-01-21
- Volume
- 10
- Issue
- 1
- Pages
- 356-356
- ISSN
- 2041-1723 (ISSN-L)
- OpenAlex
- W2910191320
- Cited by
- 542
- References
- 4
- FWCI
- 21.13
- Type
- journal article
- Language
- en
- Open access
- gold
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