The DOI matches its Crossref record; the references it cites are not checked yet.
Functional compensation precedes recovery of tissue mass following acute liver injury
Open accessAbstract
The liver plays a central role in metabolism, protein synthesis and detoxification. It possesses unique regenerative capacity upon injury. While many factors regulating cellular proliferation during liver repair have been identified, the mechanisms by which the injured liver maintains vital functions prior to tissue recovery are unknown. Here, we identify a new phase of functional compensation following acute liver injury that occurs prior to cellular proliferation. By coupling single-cell RNA-seq with in situ transcriptional analyses in two independent murine liver injury models, we discover adaptive reprogramming to ensure expression of both injury response and core liver function genes dependent on macrophage-derived WNT/β-catenin signaling. Interestingly, transcriptional compensation is most prominent in non-proliferating cells, clearly delineating two temporally distinct phases of liver recovery. Overall, our work describes a mechanism by which the liver maintains essential physiological functions prior to cellular reconstitution and characterizes macrophage-derived WNT signals required for this compensation.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
During two distinct phases of regeneration, macrophage-derived WNT ligands were required for functional compensation and induction of metabolic gene expression, whereas endothelium-derived WNT ligands were more important for inducing hepatocyte proliferation.
“During two distinct phases of regeneration, macrophage-derived WNT ligands were required for functional compensation and induction of metabolic gene expression, whereas endothelium-derived WNT ligands were more important for inducing hepatocyte proliferation.134”
From Distinct hepatocyte identities in liver homeostasis and regeneration (2023) · cites this paper as [134]
Split into 2 atoms — 1 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
The citation lists haven’t been fetched yet
References 54 · Cited by 103
Research works printed but not linked: 50
- Kietzmann, T. Metabolic zonation of the liver: the oxygen gradient revisited. Redox Biol. 11, 622–630 (2017). · DOI · Paper page
- Budnitz, D. S., Lovegrove, M. C. & Crosby, A. E. Emergency department visits for overdoses of acetaminophen-containing products. AMEPRE 40, 585–592 (2011).
- Couri, T. & Pillai, A. Goals and targets for personalized therapy for HCC. Hepatol. Int. 13, 125–137 (2019). · DOI
- Michalopoulos, G. K. Hepatostat: Liver regeneration and normal liver tissue maintenance. Hepatology 65, 1384–1392 (2017). · DOI · Paper page
- Michalopoulos, G. K. Liver regeneration after partial hepatectomy: critical analysis of mechanistic dilemmas. Am. J. Pathol. 176, 2–13 (2010). · DOI · Paper page
- Michalopoulos, G. K. Principles of liver regeneration and growth homeostasis. Compr. Physiol. 3, 485–513 (2013). · DOI
- Gonzales, K. A. U. & Fuchs, E. Skin and its regenerative powers: an alliance between stem cells and their Niche. Dev. Cell 43, 387–401 (2017). · DOI · Paper page
- Gierahn, T. M. et al. Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput. Nat. Methods 14, 395–398 (2017). · DOI
- Goessling, W. et al. APC mutant zebrafish uncover a changing temporal requirement for wnt signaling in liver development. Dev. Biol. 320, 161–174 (2008). · DOI
- Ober, E. A., Verkade, H., Field, H. A. & Stainier, D. Y. R. Mesodermal Wnt2b signalling positively regulates liver specification. Nature 442, 688–691 (2006). · DOI
- Goessling, W. et al. Genetic interaction of PGE2 and Wnt signaling regulates developmental specification of stem cells and regeneration. Cell 136, 1136–1147 (2009). · DOI
- Gougelet, A. & Colnot, S. A complex interplay between wnt/β-catenin signalling and the cell cycle in the adult liver. Int. J. Hepatol. 2012, 816125 (2012). · DOI
- Ding, B.-S. et al. Inductive angiocrine signals from sinusoidal endothelium are required for liver regeneration. Nature 468, 310–315 (2010). · DOI
- Birchmeier, W. Orchestrating Wnt signalling for metabolic liver zonation. Nat. Cell Biol. 18, 463–465 (2016). · DOI
- Ma, Y. et al. Wnt agonist stimulates liver regeneration after small-for-size liver transplantation in rats. Hepatol. Res. 46, E154–E164 (2016). · DOI
- Apte, U. et al. Beta-catenin activation promotes liver regeneration after acetaminophen-induced injury. Am. J. Pathol. 175, 1056–1065 (2009). · DOI
- Sodhi, D. et al. Morpholino oligonucleotide-triggered beta-catenin knockdown compromises normal liver regeneration. J. Hepatol. 43, 132–141 (2005). · DOI
- Monga, S. P., Pediaditakis, P., Mule, K., Stolz, D. B. & Michalopoulos, G. K. Changes in WNT/beta-catenin pathway during regulated growth in rat liver regeneration. Hepatology 33, 1098–1109 (2001). · DOI · Paper page
- Tan, X., Behari, J., Cieply, B., Michalopoulos, G. K. & Monga, S. P. S. Conditional deletion of beta-catenin reveals its role in liver growth and regeneration. Gastroenterology 131, 1561–1572 (2006). · DOI · Paper page
- Apte, U. et al. Activation of Wnt/beta-catenin pathway during hepatocyte growth factor-induced hepatomegaly in mice. Hepatology 44, 992–1002 (2006). · DOI
- Gebhardt, R. & Mecke, D. Heterogeneous distribution of glutamine synthetase among rat liver parenchymal cells in situ and in primary culture. EMBO J. 2, 567–570 (1983). · DOI · Paper page
- Väremo, L., Nielsen, J. & Nookaew, I. Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods. Nucleic Acids Res. 41, 4378–4391 (2013). · DOI
- Albrecht, J. H. et al. Involvement of p21 and p27 in the regulation of CDK activity and cell cycle progression in the regenerating liver. Oncogene 16, 2141–2150 (1998). · DOI
- Font-Burgada, J. et al. Hybrid periportal hepatocytes regenerate the injured liver without giving rise to cancer. Cell 162, 766–779 (2015). · DOI · Paper page
- Font-Burgada, J. et al. Hybrid periportal hepatocytes regenerate the injured liver without giving rise to cancer. Cell 162, 766–779 (2015). · DOI · Paper page
- Zhao, L. et al. Tissue repair in the mouse liver following acute carbon tetrachloride depends on injury-induced Wnt/β-catenin signaling. Hepatology https://doi.org/10.1002/hep.30563 (2019). · DOI · Paper page
- Yang, J. et al. β-catenin signaling in murine liver zonation and regeneration: a Wnt-Wnt situation! Hepatology 60, 964–976 (2014). · DOI
- Benhamouche, S. et al. Apc tumor suppressor gene is the ‘zonation-keeper’ of mouse liver. Dev. Cell 10, 759–770 (2006). · DOI · Paper page
- Sekine, S., Gutiérrez, P. J. A., Lan, B. Y.-A., Feng, S. & Hebrok, M. Liver-specific loss of beta-catenin results in delayed hepatocyte proliferation after partial hepatectomy. Hepatology 45, 361–368 (2007). · DOI
- Nejak-Bowen, K. N. & Monga, S. P. S. Beta-catenin signaling, liver regeneration and hepatocellular cancer: sorting the good from the bad. Semin. Cancer Biol. 21, 44–58 (2011). · DOI · Paper page
- Carpenter, A. C., Rao, S., Wells, J. M., Campbell, K. & Lang, R. A. Generation of mice with a conditional null allele for Wntless. Genesis 48, 554–558 (2010). · DOI
- Preziosi, M., Poddar, M., Singh, S. & Monga, S. P. Hepatocyte Wnts are dispensable during diethylnitrosamine and carbon tetrachloride-induced injury and hepatocellular cancer. Gene Expr. 18, 209–219 (2018). · DOI
- Jiang, A. et al. Loss of Wnt secretion by macrophages promotes hepatobiliary injury after administration of 3,5-diethoxycarbonyl-1, 4-dihydrocollidine diet. Am. J. Pathol. 189, 590–603 (2019). · DOI
- Yang, J. et al. Beta-catenin signaling in murine liver zonation and regeneration: a Wnt-Wnt situation! Hepatology 60, 964–976 (2014). · DOI
- Fausto, N. Liver regeneration. J. Hepatol. 32, 19–31 (2000). · DOI · Paper page
- Su, A. I., Guidotti, L. G., Pezacki, J. P., Chisari, F. V. & Schultz, P. G. Gene expression during the priming phase of liver regeneration after partial hepatectomy in mice. Proc. Natl Acad. Sci. U. S. A. 99, 11181–11186 (2002). · DOI
- Greenbaum, L. E., Cressman, D. E., Haber, B. A. & Taub, R. Coexistence of C/EBPα, β, growth-induced proteins and DNA synthesis in hepatocytes during liver regeneration. Implications for maintenance of the differentiated state during liver growth. J. Clin. Invest. 96, 1351–1365 (1995). · DOI
- Haber, B. A., Mohn, K. L., Diamond, R. H. & Taub, R. Induction patterns of 70 genes during nine days after hepatectomy define the temporal course of liver regeneration. J. Clin. Invest. 91, 1319–1326 (1993). · DOI
- Haber, B. A. et al. High levels of glucose-6-phosphatase gene and protein expression reflect an adaptive response in proliferating liver and diabetes. J. Clin. Invest. 95, 832–841 (1995). · DOI
- Haber, B., Naji, L., Cressman, D. & Taub, R. Coexpression of liver-specific and growth-induced genes in perinatal and regenerating liver: attainment and maintenance of the differentiated state during rapid proliferation. Hepatology 22, 906–914 (1995).
- Planas-Paz, L. et al. The RSPO–LGR4/5–ZNRF3/RNF43 module controls liver zonation and size. Nat. Cell Biol. 18, 467–479 (2016). · DOI · Paper page
- Nevzorova, Y. A., Tolba, R., Trautwein, C. & Liedtke, C. Partial hepatectomy in mice. Lab. Anim. 49, 81–88 (2015). · DOI
- Bhushan, B. et al. Pro-regenerative signaling after acetaminophen-induced acute liver injury in mice identified using a novel incremental dose model. Am. J. Pathol. 184, 3013–3025 (2014). · DOI
- Albrecht, J. H. & Hansen, L. K. Cyclin D1 promotes mitogen-independent cell cycle progression in hepatocytes. Cell Growth Differ. 10, 397–404 (1999).
- Bhushan, B. & Apte, U. Liver regeneration after acetaminophen hepatotoxicity mechanisms and therapeutic opportunities. Am. J. Pathol. 189, 719–729 (2019). · DOI · Paper page
- Jiang, A. et al. Loss of Wnt secretion by macrophages promotes hepatobiliary injury after administration of 3,5-diethoxycarbonyl-1, 4-dihydrocollidine diet. Am. J. Pathol. 189, 590–603 (2019). · DOI
- Preziosi, M., Poddar, M., Singh, S. & Monga, S. P. Hepatocyte Wnts are dispensable during diethylnitrosamine and carbon tetrachloride-induced injury and hepatocellular cancer. Gene Expr. 18, 209–219 (2018). · DOI
- Abdullah, Z. & Knolle, P. A. Liver macrophages in healthy and diseased liver. Pflug. Arch. 469, 553–560 (2017). · DOI
- Kowalczyk, M. S. et al. Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells. Genome Res. 25, 1860–1872 (2015). · DOI · Paper page
- Ouyang, W., Mueller, F., Hjelmare, M., Lundberg, E. & Zimmer, C. ImJoy: an open-source computational platform for the deep learning era. Nat. Methods 16, 1199–1200 (2019). · DOI
Metadata
- Authors
- Walesky, C. M., Kolb, K. E., Winston, C. L., Henderson, J., Kruft, B., Fleming, I., Ko, S., Monga, S. P., Mueller, F., Apte, U., Shalek, A. K., & Goessling, W.
- Affiliations
- Brigham and Women's Hospital (US)
- Broad Institute (US)
- University of Pittsburgh (US)
- Centre National de la Recherche Scientifique (FR)
- University of Kansas Medical Center (US)
- Corresponding author
- Shalek, Alex K.
- Goessling, Wolfram
- ORCID
- Venue
- Nature Communications
- Published
- 2020-11-19
- Volume
- 11
- Issue
- 1
- Pages
- 5785-5785
- ISSN
- 2041-1723 (ISSN-L)
- PMC
- PMC7677389
- OpenAlex
- W3099310641
- Cited by
- 103
- References
- 54
- Citations by year
- 2026: 9 · 2025: 15 · 2024: 16 · 2023: 21 · 2022: 13 · 2021: 22 · 2020: 7
- FWCI
- 9.26
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Nature Communications (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- HAL (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- American Liver Foundation (R01DK105198, R24OD017870, R01DK090311)
- Cholangiocarcinoma Foundation
- Searle Scholars Program
- National Institutes of Health (R24OD017870)
- National Cancer Institute (R01CA204586)
- National Institute of Diabetes and Digestive and Kidney Diseases (R01DK090311, R01DK105198, R01DK100287, R01DK098414, F32DK111151, P30DK120531, P30DK034854, R01DK062277)
- Topics
- Health Sciences › Medicine › Hepatology › Liver physiology and pathology
- Life Sciences › Pharmacology, Toxicology and Pharmaceutics › Pharmacology › Drug-Induced Hepatotoxicity and Protection
- Health Sciences › Medicine › Surgery › Organ Transplantation Techniques and Outcomes
- Keywords
- acute liver injury, liver regeneration, functional compensation, Wnt/β-catenin signaling, hepatic macrophages, transcriptional compensation, non-proliferating cells, liver repair, single-cell RNA sequencing
- MeSH terms
- Acetaminophen, Animals, Cell Cycle, Disease Models, Animal, Hepatectomy, Liver, Liver Regeneration, Macrophages, Mice, Inbred C57BL, Mice, Knockout, Gene Expression Profiling, Hepatocytes, Cell Proliferation, Wnt Proteins, beta Catenin, Mice, Wnt Signaling Pathway
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review