Cited by 101Immunotherapy and Immune ResponsesCAR-T cell therapy researchCancer Immunotherapy and Biomarkers

KRAS G12V neoantigen specific T cell receptor for adoptive T cell therapy against tumors

Open access
Lu, Dan, Chen, Yuan, Jiang, Min, Wang, Jie, Li, Yiting, Ma, Keke, Sun, Wenqiao, Zheng, Xing +8 more·2023·Nature Communications

Abstract

KRAS mutations are broadly recognized as promising targets for tumor therapy. T cell receptors (TCRs) can specifically recognize KRAS mutant neoantigens presented by human lymphocyte antigen (HLA) and mediate T cell responses to eliminate tumor cells. In the present study, we identify two TCRs specific for the 9-mer KRAS-G12V mutant neoantigen in the context of HLA-A*11:01. The TCR-T cells are constructed and display cytokine secretion and cytotoxicity upon co-culturing with varied tumor cells expressing the KRAS-G12V mutation. Moreover, 1-2C TCR-T cells show anti-tumor activity in preclinical models in female mice. The 9-mer KRAS-G12V mutant peptide exhibits a distinct conformation from the 9-mer wildtype peptide and its 10-mer counterparts. Specific recognition of the G12V mutant by TCR depends both on distinct conformation from wildtype peptide and on direct interaction with residues from TCRs. Our study reveals the mechanisms of presentation and TCR recognition of KRAS-G12V mutant peptide and describes TCRs with therapeutic potency for tumor immunotherapy.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/s41467-023-42010-1

Cites

6 of 6 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Additional emerging modalities for KRAS-targeted therapy include RNA-targeted therapeutics, antisense oligonucleotides, siRNA-based suppression, neoantigen vaccines, and adoptive T-cell therapies targeting mutant KRAS-derived epitopes.

    “Additional emerging modalities include RNA-targeted therapeutics, antisense oligonucleotides, siRNA-based suppression [65,66], neoantigen vaccines [67,68], and adoptive T-cell therapies targeting mutant KRAS-derived epitopes [69,70].”

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 47

  1. [1]Dearden S Stevens J Wu YL Blowers D Mutation incidence and coincidence in non small-cell lung cancer: meta-analyses by ethnicity and histology (mutMap) Ann. Oncol. 2013 24 2371 2376 23723294 PMC3755331
  2. [2]Hofmann MH Gerlach D Misale S Petronczki M Kraut N Expanding the reach of precision oncology by drugging All KRAS mutants Cancer Discov. 2022 12 924 937 35046095 PMC9394389
  3. [3]Singh A A gene expression signature associated with “K-Ras Addiction” reveals regulators of EMT and tumor cell survival Cancer Cell 2009 15 489 500 19477428 PMC2743093
  4. [5]Yu HA Prognostic impact of KRAS mutation subtypes in 677 patients with metastatic lung adenocarcinomas J. Thorac. Oncol. 2015 10 431 437 25415430 PMC4479120
  5. [7]Punekar SR Velcheti V Neel BG Wong KK The current state of the art and future trends in RAS-targeted cancer therapies Nat. Rev. Clin. Oncol. 2022 19 637 655 36028717 PMC9412785
  6. [8]Zhu CX Targeting KRAS mutant cancers: from druggable therapy to drug resistance Mol. Cancer 2022 21 159 35922812 PMC9351107
  7. [10]Chang EH Gonda MA Ellis RW Scolnick EM Lowy DR Human genome contains four genes homologous to transforming genes of Harvey and Kirsten murine sarcoma viruses Proc. Natl. Acad. Sci. USA 1982 79 4848 4852 6289320 PMC346782
  8. [12]Leidner R Neoantigen T-cell receptor gene therapy in pancreatic cancer N. Engl. J. Med 2022 386 2112 2119 35648703 PMC9531755
  9. [13]Xu, R. H., Du, S. Y., Zhu, J. M., Meng, F. Y., & Liu, B. R. Neoantigen-targeted TCR-T cell therapy for solid tumors: How far from clinical application. Cancer Lett. 546, 215840 (2022). 35921969
  10. [14]Willcox BE TCR binding to peptide-MHC stabilizes a flexible recognition interface Immunity 1999 10 357 365 10204491
  11. [15]Berman, D. M. & Bell, J. I. Redirecting polyclonal T cells against cancer with soluble T cell receptors. Clin. Cancer Res.29, 697–704 (2022). PMC9932579 36255733
  12. [16]Gao GF Rao ZH Bell JI Molecular coordination of alpha beta T-cell receptors and coreceptors CD8 and CD4 in their recognition of peptide-MHC ligands Trends Immunol. 2002 23 408 413 12133804
  13. [17]Bear AS Biochemical and functional characterization of mutant KRAS epitopes validates this oncoprotein for immunological targeting Nat. Commun. 2021 12 4365 34272369 PMC8285372
  14. [19]Choi J Systematic discovery and validation of T cell targets directed against oncogenic KRAS mutations Cell Rep. Methods 2021 1 100084 35474673 PMC9017224
  15. [21]Cafri G Memory T cells targeting oncogenic mutations detected in peripheral blood of epithelial cancer patients Nat. Commun. 2019 10 449 30683863 PMC6347629
  16. [22]Poole A Therapeutic high affinity T cell receptor targeting a KRAS(G12D) cancer neoantigen Nat. Commun. 2022 13 5333 36088370 PMC9464187
  17. [23]Levin N Identification and validation of T-cell receptors targeting RAS hotspot mutations in human cancers for use in cell-based immunotherapy Clin. Cancer Res. 2021 27 5084 5095 34168045 PMC8448939
  18. [24]Willimsky G In vitro proteasome processing of neosplicetopes does not predict their presentation in vivo Elife 2021 10 e62019 33875134 PMC8154032
  19. [25]Zhou X. Y. et al. High-Resolution Analyses of Human Leukocyte Antigens Allele and Haplotype Frequencies Based on 169,995 Volunteers from the China Bone Marrow Donor Registry Program. Plos One10, e0139485 (2015). PMC4589403 26421847
  20. [26]Cole DK Human TCR-binding affinity is governed by MHC class restriction J. Immunol. 2007 178 5727 5734 17442956
  21. [27]Li Y Directed evolution of human T-cell receptors with picomolar affinities by phage display Nat. Biotechnol. 2005 23 349 354 15723046
  22. [28]Gao GF Jakobsen BK Molecular interactions of coreceptor CD8 and MHC class I: the molecular basis for functional coordination with the T-cell receptor Immunol. Today 2000 21 630 636 11114424
  23. [29]Sim MJW High-affinity oligoclonal TCRs define effective adoptive T cell therapy targeting mutant KRAS-G12D Proc. Natl Acad. Sci. USA 2020 117 12826 12835 32461371 PMC7293613
  24. [30]Zhang H Identification of NY-ESO-1(157-165) specific murine T cell receptors with distinct recognition pattern for tumor immunotherapy Front Immunol. 2021 12 644520 33833762 PMC8021954
  25. [32]Ma K Molecular basis for the recognition of HIV Nef138-8 epitope by a pair of human public T cell receptors J. Immunol. 2022 209 1652 1661 36130828
  26. [33]La Gruta NL Gras S Daley SR Thomas PG Rossjohn J Understanding the drivers of MHC restriction of T cell receptors Nat. Rev. Immunol. 2018 18 467 478 29636542
  27. [34]Linette GP Cardiovascular toxicity and titin cross-reactivity of affinity-enhanced T cells in myeloma and melanoma Blood 2013 122 863 871 23770775 PMC3743463
  28. [35]Chen D The FG loop of PD-1 serves as a “Hotspot” for therapeutic monoclonal antibodies in tumor immune checkpoint therapy iScience 2019 14 113 124 30952089 PMC6447726
  29. [36]Iglesias MC Escape from highly effective public CD8(+) T-cell clonotypes by HIV Blood 2011 118 2138 2149 21734237 PMC3162351
  30. [37]Price DA Public clonotype usage identifies protective Gag-specific CD8+ T cell responses in SIV infection J. Exp. Med 2009 206 923 936 19349463 PMC2715115
  31. [38]Iglesias MC Escape from highly effective public CD8+ T-cell clonotypes by HIV Blood 2011 118 2138 2149 21734237 PMC3162351
  32. [39]Venturi V Price DA Douek DC Davenport MP The molecular basis for public T-cell responses? Nat. Rev. Immunol. 2008 8 231 238 18301425
  33. [40]Li H Ye C Ji G Han J Determinants of public T cell responses Cell Res. 2012 22 33 42 22212481 PMC3351923
  34. [41]Liu J Conserved epitopes dominate cross-CD8(+) T-cell responses against influenza A H1N1 virus among Asian populations Eur. J. Immunol. 2013 43 2055 2069 23681926
  35. [42]Li H Generation of murine CTL by a hepatitis B virus-specific peptide and evaluation of the adjuvant effect of heat shock protein glycoprotein 96 and its terminal fragments J. Immunol. 2005 174 195 204 15611241
  36. [43]Rosati SF A novel murine T-cell receptor targeting NY-ESO-1 J. Immunother. 2014 37 135 146 24598449 PMC7443746
  37. [44]Picelli S Full-length RNA-seq from single cells using Smart-seq2 Nat. Protoc. 2014 9 171 181 24385147
  38. [45]Tan SG Hemagglutinin-specific CD4(+) T-cell responses following 2009-pH1N1 inactivated split-vaccine inoculation in humans Vaccine 2017 35 5644 5652 28917539
  39. [46]Tan S VP2 dominated CD4+ T cell responses against enterovirus 71 and cross-reactivity against coxsackievirus A16 and polioviruses in a healthy population J. Immunol. 2013 191 1637 1647 23863902
  40. [47]Shi Y Conserved V delta 1 binding geometry in a setting of locus-disparate pHLA recognition by delta/alpha beta T cell receptors (TCRs): Insight into recognition of HIV peptides by TCRs J. Virol. 2017 91 e00725 17 28615212 PMC5553175
  41. [48]Boulter JM Stable, soluble T-cell receptor molecules for crystallization and therapeutics Protein Eng. 2003 16 707 711 14560057
  42. [49]Johnson CM Differential scanning calorimetry as a tool for protein folding and stability Arch. Biochem Biophys. 2013 531 100 109 23022410
  43. [50]Otwinowski Z Minor W Processing of X-ray diffraction data collected in oscillation mode Methods Enzymol. 1997 276 307 326 27754618
  44. [51]Hough MA Wilson KS From crystal to structure with CCP4 Acta Crystallogr D. Struct. Biol. 2018 74 67 29533232 PMC5947770
  45. [52]Emsley P Cowtan K Coot: model-building tools for molecular graphics Acta Crystallogr D. Biol. Crystallogr 2004 60 2126 2132 15572765
  46. [53]Adams PD PHENIX: building new software for automated crystallographic structure determination Acta Crystallogr D. Biol. Crystallogr 2002 58 1948 1954 12393927
  47. [54]Williams CJ MolProbity: More and better reference data for improved all-atom structure validation Protein Sci. 2018 27 293 315 29067766 PMC5734394

Cited by

Sorted by citations

Authors
Lu, D., Chen, Y., Jiang, M., Wang, J., Li, Y., Ma, K., Sun, W., Zheng, X., Qi, J., Jin, W., Chen, Y., Chai, Y., Zhang, C. W. H., Liang, H., Tan, S., & Gao, G. F.
Affiliations
  • Capital Medical University (CN)
  • Guangxi Medical University (CN)
  • Chinese Academy of Sciences (CN)
Corresponding author
  • Tan, Shuguang
  • Gao, George F.
Venue
Nature Communications
Published
2023-10-12
Volume
14
Issue
1
Pages
6389-6389
ISSN
2041-1723 (ISSN-L)
OpenAlex
W4387576459
Cited by
101
References
6
Citations by year
2026: 34 · 2025: 43 · 2024: 22 · 2023: 2
FWCI
11.07
Type
journal article
Language
en
Open access
Locations
  • Nature Communications (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • RePEc: Research Papers in Economics (submittedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
  • National Natural Science Foundation of China (32222031, 2022YFC2302900, 92169208, YSBR-083)
  • Chinese Academy of Sciences (YSBR-083)
  • National Key Research and Development Program of China (2022YFC2302900, 2021YFC2301400)
  • Institute of Genetics
Topics
  • Life Sciences › Immunology and Microbiology › Immunology › Immunotherapy and Immune Responses
  • Health Sciences › Medicine › Oncology › CAR-T cell therapy research
  • Health Sciences › Medicine › Oncology › Cancer Immunotherapy and Biomarkers
Keywords
KRAS G12V mutation, neoantigens, T cell receptor, adoptive T cell therapy, HLA-A*11:01, peptide conformation, cancer immunotherapy, anticancer activity, T cell cytotoxicity
MeSH terms
Animals, Antigens, Neoplasm, Female, Humans, Neoplasms, Peptides, Receptors, Antigen, T-Cell, Proto-Oncogene Proteins p21(ras), Mice, Cell- and Tissue-Based Therapy

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review