Architecture and activation of human muscle phosphorylase kinase
Open accessPublished version of a preprint
Abstract
The study of phosphorylase kinase (PhK)-regulated glycogen metabolism has contributed to the fundamental understanding of protein phosphorylation; however, the molecular mechanism of PhK remains poorly understood. Here we present the high-resolution cryo-electron microscopy structures of human muscle PhK. The 1.3-megadalton PhK α 4 β 4 γ 4 δ 4 hexadecamer consists of a tetramer of tetramer, wherein four αβγδ modules are connected by the central β 4 scaffold. The α- and β-subunits possess glucoamylase-like domains, but exhibit no detectable enzyme activities. The α-subunit serves as a bridge between the β-subunit and the γδ subcomplex, and facilitates the γ-subunit to adopt an autoinhibited state. Ca 2+ -free calmodulin (δ-subunit) binds to the γ-subunit in a compact conformation. Upon binding of Ca 2+ , a conformational change occurs, allowing for the de-inhibition of the γ-subunit through a spring-loaded mechanism. We also reveal an ADP-binding pocket in the β-subunit, which plays a role in allosterically enhancing PhK activity. These results provide molecular insights of this important kinase complex.
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Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764 · see citing works
Highly accurate protein structure prediction for the human proteome
Tunyasuvunakool, K., Adler, J., Wu, Z., Green, T., Zielinski, M., Žídek, A., Bridgland, A., Cowie, A., Meyer, C., Laydon, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03828-1 · Cited by 3,025 · cited 1× · see citing works
“For preparing the cryo-EM sample of inactive PhK, dephosphorylated PhK was incubated with puri fi ed calmodulin using 1:20 molar ratio in the presence of 4 mM EGTA, and further puri fi ed using a Superose 6 Increase 10/300 GL column, eluted in buffer F.”
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- Authors
- Yang, X., Zhu, M., Lu, X., Wang, Y., & Xiao, J.
- Affiliations
- Peking University (CN)
- Corresponding author
- Xiao, Junyu
- Venue
- Nature Communications
- Published
- 2024-03-28
- Volume
- 15
- Issue
- 1
- Pages
- 2719-2719
- ISSN
- 2041-1723 (ISSN-L)
- PMC
- PMC10978961
- OpenAlex
- W4393277981
- Cited by
- 4
- References
- 2
- Citations by year
- 2025: 4
- FWCI
- 1.29
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Nature Communications (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- National Natural Science Foundation of China (32325018)
- Topics
- Health Sciences › Medicine › Rheumatology › Glycogen Storage Diseases and Myoclonus
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Metabolism, Diabetes, and Cancer
- Keywords
- phosphorylase kinase, glycogen metabolism, protein phosphorylation, cryo-EM structure, calmodulin, calcium binding, autoinhibition, allosteric regulation, muscle
- MeSH terms
- Humans, Muscles, Phosphorylase Kinase, Cryoelectron Microscopy, Protein Subunits
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