Cited by 23Ion channel regulation and functionProtein Structure and DynamicsIon Transport and Channel Regulation

Atomistic mechanism of coupling between cytosolic sensor domain and selectivity filter in TREK K2P channels

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Türkaydin, Berke, Schewe, Marcus, Riel, Elena Barbara, Schulz, Friederike, Biedermann, Johann, Baukrowitz, Thomas, Sun, Han·2024·Nature Communications

Published version of a preprint

Abstract

The two-pore domain potassium (K 2P ) channels TREK-1 and TREK-2 link neuronal excitability to a variety of stimuli including mechanical force, lipids, temperature and phosphorylation. This regulation involves the C-terminus as a polymodal stimulus sensor and the selectivity filter (SF) as channel gate. Using crystallographic up- and down-state structures of TREK-2 as a template for full atomistic molecular dynamics (MD) simulations, we reveal that the SF in down-state undergoes inactivation via conformational changes, while the up-state structure maintains a stable and conductive SF. This suggests an atomistic mechanism for the low channel activity previously assigned to the down state, but not evident from the crystal structure. Furthermore, experimentally by using (de-)phosphorylation mimics and chemically attaching lipid tethers to the proximal C-terminus (pCt), we confirm the hypothesis that moving the pCt towards the membrane induces the up-state. Based on MD simulations, we propose two gating pathways by which movement of the pCt controls the stability (i.e., conductivity) of the filter gate. Together, these findings provide atomistic insights into the SF gating mechanism and the physiological regulation of TREK channels by phosphorylation.

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Authors
Türkaydin, B., Schewe, M., Riel, E. B., Schulz, F., Biedermann, J., Baukrowitz, T., & Sun, H.
Affiliations
  • Leibniz-Forschungsinstitut für Molekulare Pharmakologie (DE)
  • Christian-Albrechts-Universität zu Kiel (DE)
Corresponding author
  • Schewe, Marcus
  • Baukrowitz, Thomas
  • Sun, Han
Venue
Nature Communications
Published
2024-05-31
Volume
15
Issue
1
Pages
4628-4628
ISSN
2041-1723 (ISSN-L)
OpenAlex
W4399239716
Cited by
23
References
2
Citations by year
2026: 9 · 2025: 9 · 2024: 5
FWCI
3.13
Type
journal article
Language
en
Open access
Locations
  • Nature Communications (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • RePEc: Research Papers in Economics (submittedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
Deutsche Forschungsgemeinschaft (RU2518, EXC 2008/1–390540038)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ion channel regulation and function
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ion Transport and Channel Regulation
Keywords
TREK-1, TREK-2, two-pore channels, K2P channels, selectivity filter, channel gating, phosphorylation, conformational change, channel inactivation, neuronal excitability, mechanosensitive ion channels
MeSH terms
Protein Domains, Animals, Cytosol, Humans, Phosphorylation, Ion Channel Gating, Crystallography, X-Ray, Potassium Channels, Tandem Pore Domain, Molecular Dynamics Simulation, HEK293 Cells

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