Elucidating governing factors of PFAS removal by polyamide membranes using machine learning and molecular simulations
Open accessAbstract
Per- and polyfluoroalkyl substances (PFASs) have recently garnered considerable concerns regarding their impacts on human and ecological health. Despite the important roles of polyamide membranes in remediating PFASs-contaminated water, the governing factors influencing PFAS transport across these membranes remain elusive. In this study, we investigate PFAS rejection by polyamide membranes using two machine learning (ML) models, namely XGBoost and multimodal transformer models. Utilizing the Shapley additive explanation method for XGBoost model interpretation unveils the impacts of both PFAS characteristics and membrane properties on model predictions. The examination of the impacts of chemical structure involves interpreting the multimodal transformer model incorporated with simplified molecular input line entry system strings through heat maps, providing a visual representation of the attention score assigned to each atom of PFAS molecules. Both ML interpretation methods highlight the dominance of electrostatic interaction in governing PFAS transport across polyamide membranes. The roles of functional groups in altering PFAS transport across membranes are further revealed by molecular simulations. The combination of ML with computer simulations not only advances our knowledge of PFAS removal by polyamide membranes, but also provides an innovative approach to facilitate data-driven feature selection for the development of high-performance membranes with improved PFAS removal efficiency.
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The prevalence of PFCAs in water can be attributed to their comparatively higher aqueous solubility and decreased sediment affinity.
“Therefore, the prevalence of PFCAs in water can be attributed to their comparatively higher aqueous solubility and decreased sediment affinity.”
From Land use and seasonal controls on Per- and Polyfluoroalkyl Substances (PFAS) distribution and partitioning from diffuse sources in subtropical urban waterways (2026) · cites this paper as [35]
The Abstract describes PFAS in water generally, while “Probing key factors for PFAS removal by transformer model” compares PFCAs and PFSAs in their interactions with membranes. Neither passage explains PFCA prevalence in water through higher aqueous solubility or lower sediment affinity; searches for those terms found no such account in our copy. (LLM, conf=0.76)
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From local explanations to global understanding with explainable AI for trees
Lundberg, S. M., Erion, G., Chen, H., DeGrave, A., Prutkin, J. M., Nair, B., Katz, R., Himmelfarb, J., Bansal, N., & Lee, S.-I. (2020) · Nature Machine Intelligence · doi:10.1038/s42256-019-0138-9 · Cited by 10,551 · see citing works
Buck, R. C., Franklin, J., Berger, U., Conder, J. M., Cousins, I. T., de Voogt, P., Jensen, A. A., Kannan, K., Mabury, S. A., & van Leeuwen, S. P. (2011) · Integrated Environmental Assessment and Management · doi:10.1002/ieam.258 · Cited by 4,641 · see citing works
Gagliano, E., Sgroi, M., Falciglia, P. P., Vagliasindi, F. G. A., & Roccaro, P. (2020) · Water Research · doi:10.1016/j.watres.2019.115381 · Cited by 1,249 · cited 1× · see citing works
“For this document, reviewers’ comments were in black italic , and different colors are used to differentiate our responses and manuscript revision (blue: response, red: deleted, and green: added).”
Lenka, S. P., Kah, M., & Padhye, L. P. (2021) · Water Research · doi:10.1016/j.watres.2021.117187 · Cited by 755 · see citing works
A review of sources, multimedia distribution and health risks of novel fluorinated alternatives
Wang, Y., Chang, W., Wang, L., Zhang, Y., Zhang, Y., Wang, M., Wang, Y., & Li, P. (2019) · Ecotoxicology and Environmental Safety · doi:10.1016/j.ecoenv.2019.109402 · Cited by 319 · see citing works
Franke, V., Ullberg, M., McCleaf, P., Wålinder, M., Köhler, S. J., & Ahrens, L. (2021) · ACS ES&T Water · doi:10.1021/acsestwater.0c00141 · Cited by 154 · see citing works
Technology review and evaluation of different chemical oxidation conditions on treatability of PFAS
Dombrowski, P. M., Kakarla, P., Caldicott, W., Chin, Y., Sadeghi, V., Bogdan, D., Barajas‐Rodriguez, F., & Chiang, S. (. (2018) · Remediation Journal · doi:10.1002/rem.21555 · Cited by 121 · see citing works
Flagged first, then by citations
Research works printed but not linked: 35
- Xiao, F. Emerging poly-and perfluoroalkyl substances in the aquatic environment: A review of current literature. Water Res. 124, 482-495 (2017).
- Gaines, L. G. Historical and current usage of per-and polyfluoroalkyl substances (PFAS): A literature review. Am. J. Ind. Med. 66, 353-378 (2023).
- Anderko, L. & Pennea, E. Exposures to per-and polyfluoroalkyl substances (PFAS): Potential risks to reproductive and children's health. Curr. Probl. Pediatr. Adolesc. Health Care 50, 100760 (2020).
- Ehsan, M. N. et al. Environmental and health impacts of PFAS: Sources, distribution and sustainable management in North Car- olina (USA). Sci. Total Environ. 878, 163123 (2023).
- Munoz, G., Liu, J., Vo Duy, S. & Sauvé, S. Analysis of F-53B, Gen-X, ADONA, and emerging fluoroalkylether substances in environ- mental and biomonitoring samples: A review. Trends Environ. Anal. Chem. 23, e00066 (2019).
- Liang, M. et al. High throughput analysis of 21 perfluorinated com- pounds in drinking water, tap water, river water and plant effluent from southern China by supramolecular solvents-based micro- extraction coupled with HPLC-Orbitrap HRMS. Environ. Pollut. 263, 114389 (2020).
- Cui, D., Li, X. & Quinete, N. Occurrence, fate, sources and toxicity of PFAS: What we know so far in Florida and major gaps. TrAC Trends Anal. Chem. 130, 115976 (2020).
- Domingo, J. L. & Nadal, M. Human exposure to per-and poly- fluoroalkyl substances (PFAS) through drinking water: A review of the recent scientific literature. Environ. Res. 177, 108648 (2019).
- Jin, T., Peydayesh, M. & Mezzenga, R. Membrane-based technolo- gies for per-and poly-fluoroalkyl substances (PFASs) removal from water: Removal mechanisms, applications, challenges and per- spectives. Environ. Int. 157, 106876 (2021).
- McCleaf, P., Stefansson, W. & Ahrens, L. Drinking water nanofiltra- tion with concentrate foam fractionation-A novel approach for removal of per-and polyfluoroalkyl substances (PFAS). Water Res. 232, 119688 (2023).
- Aher, A. et al. Ion and organic transport in graphene oxide mem- branes: Model development to difficult water remediation appli- cations. J. Membr. Sci. 604, 118024 (2020).
- Rayne, S. & Forest, K. Perfluoroalkyl sulfonic and carboxylic acids: A critical review of physicochemical properties, levels and patterns in waters and wastewaters, and treatment methods. J. Environ. Sci. Health Part A 44, 1145-1199 (2009).
- Rahman, M. F., Peldszus, S. & Anderson, W. B. Behaviour and fate of perfluoroalkyl and polyfluoroalkyl substances (PFASs) in drinking water treatment: A review. Water Res. 50, 318-340 (2014).
- Hosseinzadeh, A. et al. Machine learning-based modeling and analysis of PFOS removal from contaminated water by nanofiltra- tion process. Sep. Purif. Technol. 289, 120775 (2022).
- Han, K. et al. A survey on vision transformer. IEEE Trans. Pattern Anal. Mach. Intell. 45, 87-110 (2022).
- Bi, J., Zhu, Z. & Meng, Q. in 2021 IEEE International Conference on Computer Science, Electronic Information Engineering and Intelli- gent Control Technology (CEI). 178-188 (IEEE).
- Fu, N. et al. Material transformers: deep learning language models for generative materials design. Mach. Learn.: Sci. Technol. 4, 015001 (2023).
- Vaswani, A. et al. Attention is all you need. Adv. Neural Inform. Process. Systems 30, 6-8 (2017).
- Lundberg, S. M. & Lee, S.-I. A unified approach to interpreting model predictions. Adv. Neural Inform. Process. Sys. 30, 3-9 (2017).
- Ribeiro, M. T., Singh, S. & Guestrin, C. in Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. 1135-1144.
- Evangelou, M. W. H. & Robinson, B. H. The phytomanagement of PFAS-contaminated land. Int. J. Environ. Res. Public Health 19, 6817 (2022).
- Zhi, Y. et al. Removing emerging perfluoroalkyl ether acids and fluorotelomer sulfonates from water by nanofiltration membranes: Insights into performance and underlying mechanisms. Sep. Purif. Technol. 298, 121648 (2022).
- Fu, L., Li, J., Wang, G., Luan, Y. & Dai, W. Adsorption behavior of organic pollutants on microplastics. Ecotoxicol. Environ. Saf. 217, 112207 (2021).
- Abbasian Chaleshtari, Z. & Foudazi, R. A review on per-and poly- fluoroalkyl substances (PFAS) remediation: separation mechanisms and molecular interactions. ACS EST Water 2, 2258-2272 (2022).
- Hall, G. G. In Advances In Atomic and Molecular Physics Vol. 20 (eds David Bates & Benjamin Bederson) 41-63 (Academic Press, 1985).
- Liu, C. et al. Removal of per-and polyfluoroalkyl substances by nanofiltration: Effect of molecular structure and coexisting natural organic matter. J. Hazard. Mater. 454, 131438 (2023).
- Qi, Y. et al. Reverse osmosis membrane with simultaneous fouling- and scaling-resistance based on multilayered metal-phytic acid assembly. J. Membr. Sci. 601, 117888 (2020).
- Neese, F. Software update: The ORCA program system-Version 5.0. Wiley Interdiscip. Rev. Comput. Mol. Sci. 12, e1606 (2022).
- Park, M., Daniels, K. D., Wu, S., Ziska, A. D. & Snyder, S. A. Magnetic ion-exchange (MIEX) resin for perfluorinated alkylsubstance (PFAS) removal in groundwater: Roles of atomic charges for adsorption. Water Res. 181, 115897 (2020).
- Lide, D. R. CRC handbook of chemistry and physics. Vol. 85 (CRC press, 2004).
- Chen, T. & Guestrin, C. In Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. 785-794.
- He, J., Yang, J., McCutcheon, J. R. & Li, Y. Molecular insights into the structure-property relationships of 3D printed polyamide reverse- osmosis membrane for desalination. J. Membr. Sci. 658, 120731 (2022).
- Liu, S., Ganti-Agrawal, S., Keten, S. & Lueptow, R. M. Molecular insights into charged nanofiltration membranes: Structure, water transport, and water diffusion. J. Membr. Sci. 644, 120057 (2022).
- Posch, H. A., Hoover, W. G. & Vesely, F. J. Canonical dynamics of the Nosé oscillator: Stability, order, and chaos. Phys. Rev. A 33, 4253 (1986).
- Gowers, R. J. et al. in Proceedings of the 15th python in science conference. 105 (SciPy Austin, TX).
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Koongolla, J. B., Egodawatta, P., Goonetilleke, A., & Ayoko, G. A. (2026) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2026.143434
- Authors
- Jeong, N., Park, S., Mahajan, S., Zhou, J., Blotevogel, J., Li, Y., Tong, T., & Chen, Y.
- Affiliations
- Georgia Institute of Technology (US)
- Arizona State University (US)
- University of Wisconsin–Madison (US)
- Commonwealth Scientific and Industrial Research Organisation (AU)
- Corresponding author
- Li, Ying
- Tong, Tiezheng
- Chen, Yongsheng
- ORCID
- Venue
- Nature Communications
- Published
- 2024-12-30
- Volume
- 15
- Issue
- 1
- Pages
- 10918-10918
- ISSN
- 2041-1723 (ISSN-L)
- PMC
- PMC11686221
- OpenAlex
- W4405895621
- Cited by
- 98
- References
- 7
- Citations by year
- 2026: 66 · 2025: 32
- FWCI
- 12.90
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Nature Communications (publishedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- National Science Foundation (2448130, 2020-67021-31526, 2345542, 0001905, 2018-68011-28371, 2112533, 2345543, 2427299, 1022591)
- U.S. Department of Energy (DE‐FOA‐0001905)
- U.S. Environmental Protection Agency (840080010)
- U.S. Department of Agriculture (accession 1022591, 2018-68011-28371, 2020-67021-31526)
- University of Wisconsin-Madison
- National Institute of Food and Agriculture (2112533, 67021, 2345543, 2020-67021-31526, COL00799, 2018-68011-28371)
- Office of Energy Efficiency and Renewable Energy (DE-FOA-0001905)
- Office of Energy Efficiency (DE-FOA-0001905)
- Topics
- Physical Sciences › Environmental Science › Environmental Chemistry › Per- and polyfluoroalkyl substances research
- Physical Sciences › Environmental Science › Water Science and Technology › Membrane Separation Technologies
- Physical Sciences › Materials Science › Materials Chemistry › Machine Learning in Materials Science
- Keywords
- per- and polyfluoroalkyl substances, PFAS removal, polyamide membranes, membrane separation, electrostatic interactions, functional groups, structure-property relationships, SHAP, XGBoost, multimodal transformer, attention maps
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