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Cell fate coordinates mechano-osmotic forces in intestinal crypt formation
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Abstract
Intestinal organoids derived from single cells undergo complex crypt-villus patterning and morphogenesis. However, the nature and coordination of the underlying forces remains poorly characterized. Here, using light-sheet microscopy and large-scale imaging quantification, we demonstrate that crypt formation coincides with a stark reduction in lumen volume. We develop a 3D biophysical model to computationally screen different mechanical scenarios of crypt morphogenesis. Combining this with live-imaging data and multiple mechanical perturbations, we show that actomyosin-driven crypt apical contraction and villus basal tension work synergistically with lumen volume reduction to drive crypt morphogenesis, and demonstrate the existence of a critical point in differential tensions above which crypt morphology becomes robust to volume changes. Finally, we identified a sodium/glucose cotransporter that is specific to differentiated enterocytes that modulates lumen volume reduction through cell swelling in the villus region. Together, our study uncovers the cellular basis of how cell fate modulates osmotic and actomyosin forces to coordinate robust morphogenesis.
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“There are two main paths to overcome the use of non-specific ECM such as Matrigel: one is the use of synthetic matrices with more complete control over composition and stiffness, and the other is to take decellularized tissue and create tissue-specific matrices205,243.”
From Organoids (2022) · cites this paper as [243]
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Cites
Going deeper with convolutions
Szegedy, C., Liu, W., Jia, Y., Sermanet, P., Reed, S., Anguelov, D., Erhan, D., Vanhoucke, V., & Rabinovich, A. (2015) · 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) · doi:10.1109/cvpr.2015.7298594 · Cited by 48,562
Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche
Sato, T., Vries, R. G., Snippert, H. J., van de Wetering, M., Barker, N., Stange, D. E., van Es, J. H., Abo, A., Kujala, P., Peters, P. J., et al. (2009) · Nature · doi:10.1038/nature07935 · Cited by 7,204
Prostaglandins and Inflammation
Ricciotti, E., & FitzGerald, G. A. (2011) · Arteriosclerosis Thrombosis and Vascular Biology · doi:10.1161/atvbaha.110.207449 · Cited by 4,035
A global double-fluorescent Cre reporter mouse
Muzumdar, M. D., Tasic, B., Miyamichi, K., Li, L., & Luo, L. (2007) · genesis · doi:10.1002/dvg.20335 · Cited by 3,491
Paneth cells constitute the niche for Lgr5 stem cells in intestinal crypts
Sato, T., van Es, J. H., Snippert, H. J., Stange, D. E., Vries, R. G., van den Born, M., Barker, N., Shroyer, N. F., van de Wetering, M., & Clevers, H. (2011) · Nature · doi:10.1038/nature09637 · Cited by 2,510
Growing Self-Organizing Mini-Guts from a Single Intestinal Stem Cell: Mechanism and Applications
Sato, T., & Clevers, H. (2013) · Science · doi:10.1126/science.1234852 · Cited by 1,170
Chemical activation of the mechanotransduction channel Piezo1
Syeda, R., Xu, J., Dubin, A. E., Coste, B., Mathur, J., Huynh, T. T., Matzen, J., Lao, J., Tully, D. C., Engels, I. H., et al. (2015) · eLife · doi:10.7554/elife.07369 · Cited by 747
Myosin II Dynamics Are Regulated by Tension in Intercalating Cells
Fernández‐González, R., Simões, S. D. M., Röper, J.-C., Eaton, S., & Zallen, J. A. (2009) · Developmental Cell · doi:10.1016/j.devcel.2009.09.003 · Cited by 644
Vertex Models of Epithelial Morphogenesis
Fletcher, A. G., Osterfield, M., Baker, R. E., & Shvartsman, S. Y. (2014) · Biophysical Journal · doi:10.1016/j.bpj.2013.11.4498 · Cited by 619
Self-organization and symmetry breaking in intestinal organoid development
Serra, D., Mayr, U., Boni, A., Lukonin, I., Rempfler, M., Challet Meylan, L., Stadler, M. B., Strnad, P., Papasaikas, P., Vischi, D., et al. (2019) · Nature · doi:10.1038/s41586-019-1146-y · Cited by 561
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White, M. J., Singh, T., Wang, E., Smith, Q., & Kutys, M. L. (2023) · Journal of Cell Science · doi:10.1242/jcs.261130 · Cited by 8
Laussu, J., Michel, D., Magne, L., Segonds, S., Marguet, S., Hamel, D., Quaranta, M., Barreau, F., Mas, E., Velay, V., et al. (2025) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1012681 · Cited by 10
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Kyriazi, D., Voth, L., Bader, A., Ewert, W., Gerlach, J., Elfrink, K., Franz, P., Tsap, M. I., Schirmer, B., Damiano-Guercio, J., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-54181-6 · Cited by 6
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O’Connor, C. E., Zhang, F., Neufeld, A., Prado, O., Simmonds, S. P., Fortin, C. L., Johansson, F., Mene, J., Saxton, S. H., Kopyeva, I., et al. (2025) · Cell stem cell · doi:10.1016/j.stem.2025.03.002 · Cited by 5
Chen, Y., Shao, Y., Chen, P., Li, K., Li, J.-Y., Meng, J., Lv, C., Liu, H., Li, B., Feng, X., et al. (2023) · Acta Biomaterialia · doi:10.1016/j.actbio.2023.08.053 · Cited by 5
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Salbaum, K. A., Shelton, E., & Serwane, F. (2022) · Biophysics Reviews · doi:10.1063/5.0077014 · Cited by 4
Zhang, Y., Yang, N., Li, Q., Tang, Y., Bai, B., & Liu, G. (2025) · Virology · doi:10.1016/j.virol.2025.110595 · Cited by 4
Wu, Y., Yu, L., Yu, Y., Wu, S. H., Yuan, Q., Duan, W., Cai, S., Xiong, B., Lin, R., & Guo, Z. (2025) · Science Advances · doi:10.1126/sciadv.ady7272 · Cited by 5
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.07.12.199463 · Cited by 4
Hydrogel design for intestinal organoids: principles governing translational regenerative medicine
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Xie, S., Zhang, S., de Medeiros, G., Liberali, P., & Skotheim, J. M. (2025) · Nature Communications · doi:10.1038/s41467-025-64150-2 · Cited by 16
Self-citationWeichselberger, V., Moore, G., Tlili, S., Merkel, M., Lenne, P., & Trivedi, V. (2025) · Developmental Cell · doi:10.1016/j.devcel.2025.11.008 · Cited by 3
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Li, Q., Liao, Y., Zeng, J., Hu, S., Li, C., Whitsett, J. A., Zheng, Y., Luo, F., Xu, C., He, T., et al. (2024) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/rcmb.2024-0140oc · Cited by 2
Xiu, J., Xue, R., Duan, X., Yao, F., Liu, X., Meng, F., Xiong, C., & Huang, J. (2025) · Acta Biomaterialia · doi:10.1016/j.actbio.2025.02.054 · Cited by 2
Magne, L., Bugarin, F., & Ferrand, A. (2025) · Biology of the Cell · doi:10.1111/boc.70003 · Cited by 2
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Self-citationSchwayer, C., Barbiero, S., Brückner, D. B., Oost, K. C., Baader, C., Repina, N. A., Kim, J., Diaz, O. E., Uccelli, I., Capolupo, L., et al. (2026) · Cell · doi:10.1016/j.cell.2026.06.009 · Cited by 3
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Claude‐Taupin, A., & Dupont, N. (2023) · Biology of the Cell · doi:10.1111/boc.202200101 · Cited by 2
Vignes, H., Vagena-Pantoula, C., Prakash, M., Norden, C., Jug, F., & Vermot, J. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.07.27.453460 · Cited by 2
Olivetta, M., & Dudin, O. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.01.19.524795 · Cited by 2
Tanida, S., Fuji, K., Lu, L., Guyomar, T., Lee, B. H., Honigmann, A., Grapin‐Botton, A., Riveline, D., Hiraiwa, T., Nonomura, M., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.08.17.553655 · Cited by 2
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Kim, H., Hu, G., Graham, A. J., Gu, G. X., & Gartner, Z. J. (2024) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a041557 · Cited by 2
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Tzioufa, F., Ceylan, M., Martino, M. L. D., Vo, D. S., Lopes, A. C. C., Hammar, R., Sundbom, M., Skogar, M. L., Hellström, P. M., Webb, D.-L., et al. (2026) · iScience · doi:10.1016/j.isci.2026.117654 · Cited by 1
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Garreta, E., Nauryzgaliyeva, Z., Marco, A., Safi, W., & Montserrat, N. (2021) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2021.10.002 · Cited by 1
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Moos, F., Suppinger, S., de Medeiros, G., Oost, K. C., Boni, A., Rémy, C., Weevers, S. L., Tsiairis, C. D., Strnad, P., & Liberali, P. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.09.28.559925 · Cited by 1
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Self-citationLaussu, J., Michel, D., Segonds, S., Marguet, S., Barreau, F., Hamel, D., Mas, E., Ferrand, A., & Bugarin, F. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.01.27.477994
Berardi, M., Bogers, E., Bielawski, K., & Akca, B. I. (2022) · doi:10.1117/12.2606184
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Laussu, J., Michel, D., Magne, L., Segonds, S., Marguet, S., Hamel, D., Quaranta, M., Barreau, F., Mas, E., Velay, V., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.05.15.540870
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Soleilhac, M. (2024) · theses.fr (ABES) · doi:10.70675/298c6b66z88a6z4a34z9437zf6ee84c0f295
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Delaire, T. (2022) · theses.fr (ABES) · doi:10.70675/af908f4fz0244z4c53z8e1azc8c96f94e7ac
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Karnat, M. (2023) · theses.fr (ABES) · doi:10.70675/9a106b44z3811z4e25zaf6azfe4020dcb8b4
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Metadata
- Authors
- Yang, Q., Xue, S.-L., Chan, C. J., Rempfler, M., Vischi, D., Maurer-Gutierrez, F., Hiiragi, T., Hannezo, E., & Liberali, P.
- Affiliations
- Friedrich Miescher Institute (CH)
- Institute of Science and Technology Austria (AT)
- National University of Singapore (SG)
- European Molecular Biology Laboratory (DE)
- University of Basel (CH)
- Corresponding author
- Yang, Qiutan
- Liberali, Prisca
- Venue
- Nature Cell Biology
- Published
- 2021-06-21
- Volume
- 23
- Issue
- 7
- Pages
- 733-744
- ISSN
- 1465-7392 (ISSN-L)
- 1476-4679
- PMC
- PMC7611267
- OpenAlex
- W3175754720
- Cited by
- 183
- References
- 71
- Citations by year
- 2026: 21 · 2025: 33 · 2024: 25 · 2023: 36 · 2022: 45 · 2021: 19
- FWCI
- 16.32
- Type
- journal article
- Language
- en
- Open access
- green
- doi.org
- Locations
- Nature Cell Biology (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- National University of Singapore (submittedVersion)
- Funders
- European Commission (HORIZON2020, 758617)
- Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (157531)
- Austrian Science Fund (P31639)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular Mechanics and Interactions
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Health Sciences › Medicine › Oncology › Cancer Cells and Metastasis
- Keywords
- intestinal organoids, actomyosin contraction, cell swelling, sodium-glucose cotransporter, enterocytes, cell fate, morphogenesis, biophysical model, mechanical robustness
- MeSH terms
- Animals, Cell Differentiation, Cell Movement, Cells, Cultured, Computer Simulation, Female, Intestinal Mucosa, Male, Mice, Inbred C57BL, Mice, Transgenic, Models, Biological, Morphogenesis, Organoids, Osmotic Pressure, Stem Cells, Stress, Mechanical, Time Factors, Microscopy, Confocal, Microscopy, Video, Cell Lineage, Paneth Cells, Myosin Type II, Mechanotransduction, Cellular, Sodium-Glucose Transport Proteins, Mice, Osmoregulation
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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