WSTF nuclear autophagy regulates chronic but not acute inflammation
Open accessPublished version of a preprint
Abstract
Acute inflammation is an essential response that our bodies use to combat infections 1. However, in the absence of infections, chronic inflammation can have a pivotal role in the onset and progression of chronic diseases, such as arthritis, cancer, autoimmune disorders, metabolic-dysfunction-associated steatohepatitis (MASH), and most ageing-associated pathologies 2,3. The underlying mechanisms that distinguish chronic inflammation from its acute counterpart remain unclear, posing challenges to the development of targeted therapies for these major diseases. Here we identify a mechanism that separates the two responses: during chronic but not acute inflammation, chromatin remodelling is influenced by nuclear autophagy, in which the WSTF protein of the ISWI chromatin-remodelling complex interacts with the ATG8 autophagy protein family in the nucleus. This interaction leads to WSTF nuclear export and subsequent degradation by autophagosomes and lysosomes in the cytoplasm. Loss of WSTF leads to chromatin opening over inflammatory genes, amplifying inflammation. Cell-penetrating peptides that block the WSTF-ATG8 interaction do not affect acute inflammation but suppress chronic inflammation in senescence as well as in MASH and osteoarthritis in mouse models and patient samples. The ability to specifically target chronic inflammation without blunting acute inflammation offers an approach for treating common chronic inflammatory diseases.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764 · see citing works
Chronic inflammation in the etiology of disease across the life span
Furman, D., Campisi, J., Verdin, E., Carrera-Bastos, P., Targ, S., Franceschi, C., Ferrucci, L., Gilroy, D. W., Fasano, A., Miller, G. W., et al. (2019) · Nature Medicine · doi:10.1038/s41591-019-0675-0 · Cited by 4,915 · see citing works
Clearance of p16Ink4a-positive senescent cells delays ageing-associated disorders
Baker, D. J., Wijshake, T., Tchkonia, T., LeBrasseur, N. K., Childs, B. G., van de Sluis, B., Kirkland, J. L., & van Deursen, J. M. (2011) · Nature · doi:10.1038/nature10600 · Cited by 3,670 · see citing works
Rb-mediated heterochromatin formation and silencing of E2F target genes during cellular senescence
Narita, M., Nuñez, S., Heard, E., Narita, M., Lin, A. W., Hearn, S. A., Spector, D. L., Hannon, G. J., & Lowe, S. W. (2003) · Cell · doi:10.1016/s0092-8674(03)00401-x · Cited by 2,278 · see citing works
Cytoplasmic chromatin triggers inflammation in senescence and cancer
Dou, Z., Ghosh, K., Vizioli, M. G., Zhu, J., Sen, P., Wangensteen, K. J., Simithy, J., Lan, Y., Lin, Y., Zhou, Z., et al. (2017) · Nature · doi:10.1038/nature24050 · Cited by 1,335 · see citing works
Self-citationInnate immune sensing of cytosolic chromatin fragments through cGAS promotes senescence
Glück, S., Guey, B., Gulen, M. F., Wolter, K., Kang, T.-W., Schmacke, N. A., Bridgeman, A., Rehwinkel, J., Zender, L., & Ablasser, A. (2017) · Nature Cell Biology · doi:10.1038/ncb3586 · Cited by 1,196 · see citing works
Laberge, R.-M., Sun, Y., Orjalo, A. V., Patil, C. K., Freund, A., Zhou, L., Curran, S. C., Davalos, A. R., Wilson-Edell, K. A., Liu, S., et al. (2015) · Nature Cell Biology · doi:10.1038/ncb3195 · Cited by 1,160 · see citing works
Freund, A., Patil, C. K., & Campisi, J. (2011) · The EMBO Journal · doi:10.1038/emboj.2011.69 · Cited by 1,039 · see citing works
BRD4 Connects Enhancer Remodeling to Senescence Immune Surveillance
Tasdemir, N., Banito, A., Roe, J.-S., Alonso-Curbelo, D., Camiolo, M., Tschaharganeh, D. F., Huang, C.-H., Aksoy, O., Bolden, J. E., Chen, C.-C., et al. (2016) · Cancer Discovery · doi:10.1158/2159-8290.cd-16-0217 · Cited by 415 · see citing works
Cellular senescence: putting the paradoxes in perspective
Campisi, J. (2011) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2010.10.005 · Cited by 368 · see citing works
Young, A. R. J., & Narita, M. (2009) · The EMBO Reports · doi:10.1038/embor.2009.22 · Cited by 214 · see citing works
JUMP: a tag-based database search tool for peptide identification with high sensitivity and accuracy
Wang, X., Li, Y., Wu, Z., Wang, H., Tan, H., & Peng, J. (2014) · Molecular & Cellular Proteomics · doi:10.1074/mcp.o114.039586 · Cited by 194 · see citing works
Self-citationClinical strategies and animal models for developing senolytic agents
Kirkland, J. L., & Tchkonia, T. (2015) · Experimental Gerontology · doi:10.1016/j.exger.2014.10.012 · Cited by 168 · see citing works
Niu, M., Cho, J.-H., Kodali, K., Pagala, V., High, A. A., Wang, H., Wu, Z., Li, Y., Bi, W., Zhang, H., et al. (2017) · Analytical Chemistry · doi:10.1021/acs.analchem.6b04415 · Cited by 118 · see citing works
Self-citationZanella, M., Vitriolo, A., Andirko, A., Martins, P. T., Sturm, S., O’Rourke, T., Laugsch, M., Malerba, N., Skaros, A., Trattaro, S., et al. (2019) · Science Advances · doi:10.1126/sciadv.aaw7908 · Cited by 101 · see citing works
Wang, H., Yang, Y., Li, Y., Bai, B., Wang, X., Tan, H., Liu, T., Beach, T. G., Peng, J., & Wu, Z. (2015) · Journal of Proteome Research · doi:10.1021/pr500882h · Cited by 96 · see citing works
Self-citation
Flagged first, then by citations
- Authors
- Wang, Y., Eapen, V. V., Liang, Y., Kournoutis, A., Sherman, M. S., Xu, Y., Onorati, A., Li, X., Zhou, X., Corey, K. E., Du, K., Cabral Burkard, A. M., Ho, C.-K., Xie, J., Zhang, H., Maeso-Díaz, R., Ma, X., Rieprecht, U., O’Brien, T., Cetinbas, M., Wang, L., Liu, J., Bretz, C., Havas, A. P., Zhou, Z., Ho Sui, S. J., Saladi, S. V., Sadreyev, R. I., Adams, P. D., Kingston, R. E., Diehl, A. M., Alman, B., Goessling, W., Yue, Z., Wang, X.-F., Johansen, T., & Dou, Z.
- Affiliations
- Harvard University (US)
- UiT The Arctic University of Norway (NO)
- Icahn School of Medicine at Mount Sinai (US)
- Duke University (US)
- The University of Texas at San Antonio Health Science Center (US)
- Sanford Burnham Prebys Medical Discovery Institute (US)
- Chinese Academy of Medical Sciences & Peking Union Medical College (CN)
- University of Toledo (US)
- Corresponding author
- Wang, Xiao-Fan
- Johansen, Terje
- Dou, Zhixun
- ORCID
- Wang, Yu
- Eapen, Vinay V.
- Liang, Yaosi
- Kournoutis, Athanasios
- Sherman, Marc Samuel
- Xu, Yanxin
- Li, Xianting
- Zhou, Xiaoting
- Corey, Kathleen E.
- Du, Kuo
- Ho, Chia-Kang
- Xie, Jing
- Ma, Xinyi
- Rieprecht, Ulrike
- Wang, Lu
- Liu, Jihe
- Havas, Aaron P.
- Zhou, Zhuo
- Ho Sui, Shannan J.
- Saladi, Srinivas Vinod
- Sadreyev, Ruslan I.
- Adams, Peter D.
- Kingston, Robert E.
- Diehl, Anna Mae
- Alman, Benjamin
- Goessling, Wolfram
- Yue, Zhenyu
- Wang, Xiao-Fan
- Johansen, Terje
- Dou, Zhixun
- Venue
- Nature
- Published
- 2025-07-02
- Volume
- 644
- Issue
- 8077
- Pages
- 780-789
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- PMC
- PMC12888835
- OpenAlex
- W4411932295
- Cited by
- 30
- References
- 16
- Citations by year
- 2026: 21 · 2025: 7 · 2024: 1 · 2022: 1
- FWCI
- 19.41
- Type
- journal article
- Language
- en
- Open access
- green
- doi.org
- Licence
- Locations
- Nature (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- PubMed (publishedVersion)
- PubMed Central (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- Funders
- Glenn Foundation for Medical Research
- Massachusetts General Hospital
- Harvard Catalyst (UL1TR002541)
- Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
- Fondation pour la Recherche Médicale
- Norges Forskningsråd (249884)
- National Institutes of Health (UL1TR002541)
- Harvard Stem Cell Institute
- National Institute on Alcohol Abuse and Alcoholism (R01AA010154)
- National Institute on Aging (R21AG073894, R00AG053406, R01AG082785, R01AG072520, U54AG075936)
- National Cancer Institute (UH3CA268117, UG3CA268117, R01CA244564)
- National Institute of General Medical Sciences (R35GM137889)
- National Institute of Diabetes and Digestive and Kidney Diseases (K08DK139370, K01DK135793, P30DK040561)
- National Institute of Neurological Disorders and Stroke (R01NS117590, R01NS060123)
- National Center for Advancing Translational Sciences
- Topics
- Health Sciences › Medicine › Epidemiology › Autophagy in Disease and Therapy
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Nuclear Structure and Function
- Keywords
- WSTF, ATG8, chronic inflammation, acute inflammation, chromatin remodeling, cell-penetrating peptides, nonalcoholic steatohepatitis, osteoarthritis, cellular senescence, lysosomal degradation
- MeSH terms
- Autophagosomes, Autophagy-Related Protein 8 Family, Acute Disease, Aging, Animals, Autophagy, Cell Nucleus, Chromatin, Chronic Disease, Disease Models, Animal, Female, Humans, Inflammation, Lysosomes, Male, Transcription Factors, Active Transport, Cell Nucleus, Chromatin Assembly and Disassembly, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review