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Multi-trait analysis of genome-wide association summary statistics using MTAG
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Abstract
We introduce multi-trait analysis of GWAS (MTAG), a method for joint analysis of summary statistics from genome-wide association studies (GWAS) of different traits, possibly from overlapping samples. We apply MTAG to summary statistics for depressive symptoms (N eff = 354,862), neuroticism (N = 168,105), and subjective well-being (N = 388,538). As compared to the 32, 9, and 13 genome-wide significant loci identified in the single-trait GWAS (most of which are themselves novel), MTAG increases the number of associated loci to 64, 37, and 49, respectively. Moreover, association statistics from MTAG yield more informative bioinformatics analyses and increase the variance explained by polygenic scores by approximately 25%, matching theoretical expectations.
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In the citing paper
“C-GWAS has been shown to have increased statistical power compared to traditional methods such as minimal p-values of multiple single-trait GWASs (MinGWAS) and MTAG [5]”
From Combined genome-wide association study of 136 quantitative ear morphology traits in multiple populations reveal 8 novel loci (2023) · cites this paper as [5]
Experimental — accuracy not yet measuredIn the citing paper
“and has been previously associated with both MD and neuroticism (Turley et al., 2018; Wray et al., 2018).”
From Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders (2019) · cites this paper as Turley et al., 2018
In the citing paper
“Using this method, we discovered 1,193 independent, genome-wide significantly associated common variants (MAF > 1%; 173 for AgeSmk, 89 CigDay, 83 SmkCes, 692 SmkInit, and 156 DrnkWk) listed in Supplementary Table 12”
From Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use (2019) · cites this paper as [16]
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Citations
Cites
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Self-citationGlutamate Receptor Ion Channels: Structure, Regulation, and Function
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Modeling Linkage Disequilibrium Increases Accuracy of Polygenic Risk Scores
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“These include 1) meta-analyzing GWAS summary statistics for different traits [12], 2) combining summary statistics using genetic correlations [13], and 3) making use of genomic structural equation models [14].”
MethodResultGenetic and neural bases of the neuroticism general factor
Kim, Y., Saunders, G., Giannelis, A., Willoughby, E. A., DeYoung, C. G., & Lee, J. J. (2023) · Biological Psychology · doi:10.1016/j.biopsycho.2023.108692 · Cited by 15
Self-citationBeyond apples and pears: sex-specific genetics of body fat percentage
Roshandel, D., Lu, T., Paterson, A. D., & Dash, S. (2023) · Frontiers in Endocrinology · doi:10.3389/fendo.2023.1274791 · Cited by 15
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“Additionally, there have been reports of associations detected in single-trait GWAS that may vanish in multi-trait analyses (Pausch et al. 2016; Turley et al. 2018).”
BackgroundMcGuirl, M. R., Smith, S. P., Sandstede, B., & Ramachandran, S. (2020) · Genetics · doi:10.1534/genetics.120.303096 · Cited by 15
“…association between variants and multiple phenotypes (Jiang and Zeng 1995; Marchini et al. 2007; Ferreira and Purcell 2008; Stephens 2013; Turley et al. 2018), these studies (including Hormozdiari et al. 2016; Pickrell et al. 2016) share the central challenge of single-phenotype GWA…”
BackgroundMeng, W., Reel, P. S., Nangia, C., Rajendrakumar, A. L., Hébert, H. L., Guo, Q., Adams, M. J., Zheng, H., Lu, Z. H., Ray, D., et al. (2022) · Phenomics · doi:10.1007/s43657-022-00078-7 · Cited by 14
“Specific software created for this purpose includes Software for Correlated Phenotype Analysis (META-SCOPA), Canonical Correlation Analysis (metaCCA), and Multi-Trait Analysis of GWAS (MTAG) (Cichonska et al. 2016; Mägi et al. 2017; Turley et al. 2018).”
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Burstein, D., Hoffman, G. E., Gupta, S., Almeida, S. D., Mathur, D. D., Venkatesh, S., Therrien, K., Fanous, A. H., Bigdeli, T. B., Harvey, P. D., et al. (2023) · medRxiv · doi:10.1101/2023.01.17.23284670 · Cited by 17
Chen, K., Gao, T., Liu, Y., Zhu, K., Wang, T., & Zeng, P. (2024) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2023.09.017 · Cited by 15
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“In recent years, there has been a growing focus on investigating the genetic overlap between psychiatric disorders and digestive diseases using genome-wide cross-trait analyses 14 – 16 .”
Multi-trait genetic analysis of asthma and eosinophils uncovers pleiotropic loci in East Asians
Zhi, L., Zheng, Q., Jiang, Y., Yu, L., Li, L., Song, Y., Peng, B., Zhang, C., Jiang, H., Li, R., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-60405-0 · Cited by 13
“Recent advancements in statistical methodologies for GWAS analyses have facilitated joint analyses of traits with shared genetic architecture 3 – 5 .”
Reitz, J., Rosoff, D. B., Perlstein, T., Wagner, A., Jung, J., Wagner, J., Reiner, B. C., & Lohoff, F. W. (2025) · Molecular Psychiatry · doi:10.1038/s41380-025-03199-3 · Cited by 16
“All MR and colocalization analyses were performed using the TwoSampleMR [62] (version 6.9) and coloc [62] R packages (version 5.2.1) in R version 4.2.2.”
InfluentialThe role of genetics in subjective well-being
Røysamb, E., & Nes, R. B. (2018) · Nature Human Behaviour · doi:10.1038/s41562-018-0494-1 · Cited by 13
Colbert, S. M. C., Funkhouser, S. A., Johnson, E. C., Morrison, C. L., Hoeffer, C. A., Friedman, N. P., Ehringer, M. A., & Evans, L. M. (2021) · American Journal of Medical Genetics Part B Neuropsychiatric Genetics · doi:10.1002/ajmg.b.32874 · Cited by 11
“…and the only protein coding gene in this region, DCC (deleted in colorectal carcinoma gene), is implicated in a variety of cognitive (Reynolds et al., 2018; Savage et al., 2018) and psychiatric traits (P. H. Lee et al., 2019; Manitt et al., 2013; Turley et al., 2018; Wray et al., 2018).”
BackgroundStrong and weak cross-inheritance of substance use disorders in a nationally representative sample
Zhang, H., Grant, B. F., Hodgkinson, C. A., Ruan, W. J., Kerridge, B. T., Huang, B., Saha, T. D., Fan, A. Z., Wilson, V., Jung, J., et al. (2021) · Molecular Psychiatry · doi:10.1038/s41380-021-01370-0 · Cited by 16
“To boost power to detect gene effects on SUDs, and to identify genetic correlations between SUDs, we used multi-trait analysis of GWAS (MTAG), a method for joint analysis of summary statistics from multiple GWAS with overlapping samples.”
MethodInfluentialThe role of critical immune genes in brain disorders: insights from neuroimaging immunogenetics
Bian, B., Couvy‐Duchesne, B., Wray, N. R., & McRae, A. F. (2022) · Brain Communications · doi:10.1093/braincomms/fcac078 · Cited by 14
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bGWAS: an R package to perform Bayesian genome wide association studies
Mounier, N., & Kutalik, Z. (2020) · Bioinformatics · doi:10.1093/bioinformatics/btaa549 · Cited by 11
“To leverage this information, several methods have already been published, such as MTAG (Turley et al., 2018) or GenomicSEM (Grotzinger et al., 2019) for example and we developed a Bayesian GWAS approach, first described by McDaid et al. (2017). The aim of our approach is to increase power by comparing the observed Z-…”
MethodYe, C., Dou, C., Liu, D., Kong, L., Chen, M., Xu, M., Xu, Y., Li, M., Zhao, Z., Zheng, J., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-64985-9 · Cited by 13
Williams, V., Carlsson, C., Fischer, A. M., Johnson, S., Lange, K., Partridge, E., Roan, C., Asthana, S., & Herd, P. (2021) · Journal of Alzheimer's Disease · doi:10.3233/jad-201422 · Cited by 5
“…several polygenic risk scores have been calculated based on genome-wide association studies (GWAS) and are made freely available, including polygenic scores of educational attainment, self-reported math ability, cognitive performance, depression, subjective well-being, and neuroticism [30, 31].”
Overs, B. J., Roberts, G. M. P., Ridgway, K., Claudio Toma, A., Hadzi‐Pavlovic, D., Wilcox, H. C., Hulvershorn, L. A., Nürnberger, J. I., Schofield, P. R., Mitchell, P. B., et al. (2021) · American Journal of Medical Genetics Part B Neuropsychiatric Genetics · doi:10.1002/ajmg.b.32879 · Cited by 12
Candidate loci shared among periodontal disease, diabetes and bone density
Yu, Y., Steffensen, B., Ridker, P. M., Buring, J. E., & Chasman, D. I. (2023) · Frontiers in Endocrinology · doi:10.3389/fendo.2022.1016373 · Cited by 12
“In this study, to overcome difficulties in identifying significant genomic loci for PD, we explored potential shared genetics of the large scale GWAS summary statistics for periodontitis/loose teeth (PerioLT) from the UK Biobank/GLIDE (13), for T2D from the DIAGRAM consortium (23), and for bone mineral density (BMD) f…”
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Koller, D., Friligkou, E., Stiltner, B., Pathak, G. A., Løkhammer, S., Levey, D. F., Zhou, H., Hatoum, A. S., Deak, J. D., Kember, R. L., et al. (2024) · Molecular Psychiatry · doi:10.1038/s41380-024-02446-3 · Cited by 13
“The PTU GWAS [18] was performed by combining Fagerström Test for Nicotine Dependence (FTND) and cigarettes per day (CPD) GWAS data using the Multi-Trait Analysis of GWAS (MTAG) approach [26].”
Polygenic Risk Scores and Genetically Complex Eye Disease
Le, N., He, W., & MacGregor, S. (2024) · Annual Review of Vision Science · doi:10.1146/annurev-vision-102122-103958 · Cited by 11
Inflammatory bowel disease and rheumatoid arthritis share a common genetic structure
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Kang, J., Wu, X., Li, Y., Zhao, S., Wang, S., & Yu, D. (2024) · Frontiers in Immunology · doi:10.3389/fimmu.2024.1425610 · Cited by 14
“This method applies inverse-variance weighted meta-analysis to summary statistics obtained from GWAS conducted on diverse traits (39).”
Muiño, E., Cárcel‐Márquez, J., Llucià‐Carol, L., Gallego-Fábrega, C., Cullell, N., Lledós, M., Martín-Campos, J. M., Villatoro-González, P., Sierra‐Marcos, A., Ros‐Castelló, V., et al. (2024) · Neurology · doi:10.1212/wnl.0000000000209666 · Cited by 13
Genome-wide association study of maternal plasma metabolites during pregnancy
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Genomic determinants of biological age estimated by deep learning applied to retinal images
Huang, Y., Syed, M. G., Chen, R., Li, C., Shang, X., Wang, W., Zhang, X., Zhang, X., Tang, S., Liu, J., et al. (2025) · GeroScience · doi:10.1007/s11357-024-01481-w · Cited by 10
“Multi-trait analyses of GWAS (MTAG) [27] was run to combine the summary statistics between the UK Biobank cohort and GoDARTS cohort.”
Gilchrist, L., Spargo, T. P., Green, R., Coleman, J. R. I., Howard, D. M., Thorp, J. G., Adey, B. N., Lord, J., Davies, H. L., Mundy, J., et al. (2025) · Nature Mental Health · doi:10.1038/s44220-024-00369-0 · Cited by 11
“Multi-trait analysis of GWAS (MTAG) 38 v1.”
InfluentialGenetic associations of perinatal pain and depression
McClain, L. L., Farrell, L. M., LaSorda, K. R., Pan, L. A., Peters, D. G., & Lim, G. (2019) · Molecular Pain · doi:10.1177/1744806919882139 · Cited by 12
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A statistical genetic investigation of psychiatric resilience
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“For example, research has identified GWS loci associated with factors such as positive affect (Wingo et al., 2017), subjective well-being (Okbay et al., 2016; Turley et al., 2018), and IQ (Davies et al., 2011; Trampush et al., 2017).”
BackgroundMethodInfluentialHuang, X., Yao, M., Tian, P., Wong, J. Y. Y., Li, Z., Liu, Z., & Zhao, J. V. (2023) · Communications Biology · doi:10.1038/s42003-023-04805-2 · Cited by 15
“We applied MTAG, an approach for meta-analysis of summary statistics from GWAS of different traits robust to sample overlap, to identify novel loci with strong signals for COVID-19, and to detect genome-wide signi fi cant loci between VTE and three COVID-19 traits 42 – 44 .”
Trans-ancestry meta-analysis of genome wide association studies of inhibitory control
Arnatkevičiūtė, A., Lemire, M., Morrison, C. L., Mooney, M. A., Ryabinin, P., Roslin, N. M., Nikolas, M. A., Coxon, J. P., Tiego, J., Hawi, Z., et al. (2023) · Molecular Psychiatry · doi:10.1038/s41380-023-02187-9 · Cited by 13
“Novel approaches for incorporating data from different ancestries are being continuously developed [77, 102 – 104] providing opportunities for future large-scale trans-ancestry studies to uncover the genetic architecture of complex traits in a generalisable way.”
Boosting predictabilities of agronomic traits in rice using bivariate genomic selection
Wang, S., XU, Y. C., Qu, H., Cui, Y., Li, R., Chater, J. M., Yu, L. M., Zhou, R., Ma, R., Huang, Y., et al. (2020) · Briefings in Bioinformatics · doi:10.1093/bib/bbaa103 · Cited by 12
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Genetic Association Study of Childhood Aggression across raters, instruments and agePreprint
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Yang, Y., Musco, H., Simpson, S., Zhu, Z., Wang, Y., Lin, X., Zhang, J., Taylor, B. V., Gratten, J., & Zhou, Y. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.11.16.385914 · Cited by 12
Akimova, E. T., Wolfram, T., Ding, X., Tropf, F. C., & Mills, M. C. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.03.31.534944 · Cited by 12
Zhou, S., Luo, H., Tian, Y., Li, H., Zeng, Y., Wang, X., Shan, S., Xiong, J., & Cheng, G. (2023) · Psychological Medicine · doi:10.1017/s0033291723001423 · Cited by 11
Moore, A. L., Marks, J. A., Quach, B. C., Guo, Y., Bierut, L. J., Gaddis, N., Hancock, D. B., Page, G. P., & Johnson, E. O. (2023) · Communications Biology · doi:10.1038/s42003-023-05413-w · Cited by 12
“Instead, our evaluation demonstrated that the use of functional weighting methods presents a tradeoff between high SN and high PPV. MTAG 33 had the best performance overall with respect to PPV, and LSMM with respect to SN.”
Liu, M., Khasiyev, F., Sariya, S., Spagnolo‐Allende, A., Sanchez, D. L., Andrews, H., Yang, Q., Beiser, A., Qiao, Y., Thomas, E. A., et al. (2023) · Journal of the American Heart Association · doi:10.1161/jaha.123.030935 · Cited by 11
Genome-wide association studies (GWAS) and post-GWAS analyses of impulsivity: A systematic review
Wang, J., Gu, R., Kong, X., Luan, S., & Luo, Y. L. L. (2024) · Progress in Neuro-Psychopharmacology and Biological Psychiatry · doi:10.1016/j.pnpbp.2024.110986 · Cited by 11
Yuan, W., Huang, M., Chen, X., Wu, J., Li, L., Wei, J., Lu, C., Han, L., & Lu, Y. (2024) · Frontiers in Immunology · doi:10.3389/fimmu.2024.1328297 · Cited by 14
“Multi-trait analysis of GWAS (MTAG) employs generalized inverse-variance-weighted meta-analysis for multiple associated traits and designed to detect novel genetic correlations for each trait (32).”
MethodPolygenic Risk Scores Driving Clinical Change in Glaucoma
Kolovos, A., Hassall, M., Siggs, O. M., Souzeau, E., & Craig, J. E. (2024) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-121222-105817 · Cited by 12
Kranzler, H. R., Davis, C. N., Feinn, R., Jinwala, Z., Khan, Y., Oikonomou, A., Silva-Lopez, D., Burton, I., Dixon, M., Milone, J., et al. (2024) · Nature Human Behaviour · doi:10.1038/s41562-024-01885-w · Cited by 18
“Using GWAS of the latent genetic factors, we generated summary statistics and then calculated ancestry-specific M/AD and SUD PRS in the Yale–Penn sample (for AA, n = 2,284; for EA, n = 2,871).”
InfluentialMulti-trait multi-locus SEM model discriminates SNPs of different effects
Igolkina, A. A., Meshcheryakov, G. A., Gretsova, M., Nuzhdin, S. V., & Samsonova, M. G. (2020) · BMC Genomics · doi:10.1186/s12864-020-06833-2 · Cited by 11
“combining several single-trait GWAS of different traits was proposed [9].”
BackgroundShared genetic influences on resting‐state functional networks of the brain
Guimaraes, J., Sprooten, E., Beckmann, C. F., Franke, B., & Bralten, J. (2022) · Human Brain Mapping · doi:10.1002/hbm.25712 · Cited by 9
Familial autoimmunity in patients with idiopathic inflammatory myopathies
Che, W. I., Westerlind, H., Lundberg, I. E., Hellgren, K. E., Kuja‐Halkola, R., & Holmqvist, M. E. (2022) · Journal of Internal Medicine · doi:10.1111/joim.13573 · Cited by 10
Zou, J., Zhou, J., Faller, S., Brown, R., Sankararaman, S., & Eskin, E. (2022) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkac261 · Cited by 10
Wang, J., Campos, A. I., García‐Marín, L. M., Rentería, M. E., & Xu, L. (2023) · Obesity · doi:10.1002/oby.23669 · Cited by 10
“Compared with univariable MR-IVW, the MVMR results using the MTAG showed the associations of sleep apnea and snoring with type T AB L E 2 MR associations of sleep apnea with cardiovascular diseases using SNPs for sleep apnea and snoring, using published GWASa Exposure Outcomes SNP (F-statistic) Methods Odds ratio/β 95…”
MethodInfluentialCheng, Y., Dao, C., Zhou, H., Li, B., Kember, R. L., Toikumo, S., Zhao, H., Gelernter, J. E., Kranzler, H. R., Justice, A. C., et al. (2023) · Translational Psychiatry · doi:10.1038/s41398-023-02409-2 · Cited by 10
“A recently developed method, multi-trait analysis of GWASs (MTAG), enables joint analysis of genetically correlated traits to boost statistical power to detect variants for each trait [15].”
BackgroundMethodResultInfluentialCognitive Genomics: Recent Advances and Current Challenges
Fitzgerald, J. C., Morris, D. W., & Donohoe, G. J. (2020) · Current Psychiatry Reports · doi:10.1007/s11920-019-1125-x · Cited by 11
Liu, L., Wen, Y., Ning, Y.-J., Li, P., Cheng, B., Cheng, S.-Q., Zhang, L., Ma, M., Qi, X., Liang, C.-J., et al. (2020) · Clinical and Translational Medicine · doi:10.1186/s40169-020-00272-y · Cited by 9
“In the second stage, we performed MTAG [31] analysis to detect novel candidate genes for OP and SCZ, respectively.”
BackgroundMethodInfluentialTruncated tests for combining evidence of summary statistics
Bu, D., Yang, Q., Meng, Z., Zhang, S., & Li, Q. (2020) · Genetic Epidemiology · doi:10.1002/gepi.22330 · Cited by 11
“Multi‐trait analysis of GWAS (Turley et al., 2018) improves the estimates of single trait by incorporating information contained in the GWAS estimation for other traits.”
Li, S., Zhou, Z., Meng, J., Zhu, X., Wang, K., Wei, D., & Qiu, J. (2020) · Psychophysiology · doi:10.1111/psyp.13728 · Cited by 12
Pasman, J. A., Smit, K., Vollebergh, W., Nolte, I. M., Hartman, C. A., Abdellaoui, A., Verweij, K. J. H., Maciejewski, D. F., & Vink, J. M. (2021) · Development and Psychopathology · doi:10.1017/s095457942100081x · Cited by 13
“MTAG jointly analyzes two or more genetically correlated traits, aggregating their signal and boosting power to detect genetic associations (Turley et al., 2018).”
Fate or coincidence: do COPD and major depression share genetic risk factors?
Martucci, V. L., Richmond, B. W., Davis, L. K., Blackwell, T. S., Cox, N. J., Samuels, D. C., Edwards, D. R. V., & Aldrich, M. C. (2021) · Human Molecular Genetics · doi:10.1093/hmg/ddab068 · Cited by 12
Nosková, A., Mehrotra, A., Kadri, N. K., Lloret‐Villas, A., Neuenschwander, S., Andreas Hofer, A., & Pausch, H. (2023) · BMC Genomics · doi:10.1186/s12864-023-09295-4 · Cited by 10
“The phenomenon that associations detected by stGWAS might disappear in multi-trait analyses has been reported earlier [12, 40].”
BackgroundFamilial aggregation of multimorbidity in Sweden: national explorative family study
Zöller, B., Pirouzifard, M., Holmquist, B., Sundquist, J., Halling, A., & Sundquist, K. (2023) · BMJ Medicine · doi:10.1136/bmjmed-2021-000070 · Cited by 10
Genetic variants for head size share genes and pathways with cancer
Knol, M. J., Poot, R. A., Evans, T. E., Satizábal, C. L., Mishra, A., Sargurupremraj, M., der Auwera, S. V., Duperron, M., Jian, X., Hostettler, I. C., et al. (2024) · Cell Reports Medicine · doi:10.1016/j.xcrm.2024.101529 · Cited by 14
Song, Y., Li, L., Jiang, Y., Peng, B., Jiang, H., Chao, Z., & Chang, X. (2024) · Schizophrenia Bulletin · doi:10.1093/schbul/sbae145 · Cited by 10
Yuan, W., Luo, Q., & Wu, N. (2024) · BMC Genomics · doi:10.1186/s12864-024-10787-0 · Cited by 10
“…to examine genetic overlap and loci between different traits [13]; ③ Performing genome-wide association study (GWAS) multi-trait analysis (MTAG) [14] for the two diseases to identify shared risk loci; and ④ Applying LDSC specifically expressed gene (LDSC-SEG) analysis in determining tissues…”
BackgroundMethodInfluentialHwang, L., Cuéllar-Partida, G., Yengo, L., Zeng, J., Toivonen, J., Arvas, M., Beaumont, R. N., Freathy, R. M., Moen, G.-H., Warrington, N. M., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-53495-9 · Cited by 9
“This makes sense since the two-degree-of-freedom test (and the meta-analytic strategy) are derived by speci fi cally modeling the correlation between maternal and fetal genotypes whereas other multivariate tests, e.g., MTAG 13 , use models that are agnostic to the mother-offspring relationship and do not take advantage…”
InfluentialSalenius, K., Väljä, N., Thusberg, S., Iris, F., Ladd‐Acosta, C., Roos, C., Nykter, M., Fasano, A., Autio, R., Lin, J., et al. (2024) · BMC Psychiatry · doi:10.1186/s12888-024-06392-w · Cited by 11
Genetic Association of Juvenile Idiopathic Arthritis With Adult Rheumatic Disease
Fan, J., Hao, J., Fu, Y., Liu, X., Qu, H., Glessner, J., Ji, D., Liu, W. Y., Zheng, G., Ding, Z., et al. (2024) · JAMA Network Open · doi:10.1001/jamanetworkopen.2024.51341 · Cited by 10
Zhu, B., Wang, T., Niu, Q., Wang, Z., Hay, E. H., Xu, L., Chen, Y., Zhang, L., Gao, H., Gao, H., et al. (2025) · Communications Biology · doi:10.1038/s42003-025-07604-z · Cited by 10
“To improve the statistical power of GWASs for medium and high genetic correlationfattyacidtraits,themulti-traitanalysisofGWAS(MTAG 87 )was used to joint analysis of multiple traits with the imputed WGS data.”
Sun, Y., Zhao, G., Zhang, Y., Lu, Z., Kang, Z., Sun, J., Feng, X., Guo, J., Liao, Y., Guo, L., et al. (2025) · Cell Reports Medicine · doi:10.1016/j.xcrm.2025.102119 · Cited by 11
Xiong, Z., Li, Y., Liu, X., Lu, H., Hysi, P. G., Pardo, L. M., Uitterlinden, A. G., Rivadeneira, F., Ikram, M. A., Ghanbari, M., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-61761-7 · Cited by 13
“Compared with our previous face C-GWAS of 78 traits obtained from 13 landmarks in 10,115 individuals 31 , the current C-GWAS of 946 facial traits from 44 landmarks in 11,662 individuals gained 184% extra statisticalpowerasestimatedusingtheincreaseinthemean χ 2 statistic method described in Turley et al. 32 .”
InfluentialWang, H., Pei, F., Vanyukov, M. M., Bahar, İ., Wu, W., & Xing, E. P. (2021) · BMC Bioinformatics · doi:10.1186/s12859-021-03959-2 · Cited by 10
A novel transcriptional risk score for risk prediction of complex human diseases
Shan, N., Xie, Y., Song, S., Jiang, W., Wang, Z., & Hou, L. (2021) · Genetic Epidemiology · doi:10.1002/gepi.22424 · Cited by 9
Gui, H., Tang, W. H. W., Francke, S., Li, J., She, R., Bazeley, P. S., Pereira, N. L., Adams, K. F., Luzum, J. A., Connolly, T. M., et al. (2023) · Circulation Heart Failure · doi:10.1161/circheartfailure.122.010438 · Cited by 10
Zhang, W., Zhang, L., Zhu, J., Xiao, C., Cui, H., Yang, C., Yan, P., Tang, M., Wang, Y., Chen, L., et al. (2023) · Diabetes · doi:10.2337/db22-0954 · Cited by 10
Ros‐Freixedes, R. (2024) · Livestock Science · doi:10.1016/j.livsci.2024.105430 · Cited by 10
Improved Estimation of Phenotypic Correlations Using Summary Association Statistics
Li, T., Zheng, N., & Shen, X. (2021) · Frontiers in Genetics · doi:10.3389/fgene.2021.665252 · Cited by 10
“The phenotypic correlation can be estimated by the intercept of a bivariate linkage disequilibrium score regression (LDSC) (Bulik-Sullivan et al., 2015; Turley et al., 2018; Zheng et al., 2018).”
MethodHikino, K., Koido, M., Otomo, N., Tomizuka, K., Ikegawa, S., Matsuda, K., Momozawa, Y., The Biobank Japan Project, Yamanashi, Y., Furukawa, Y., et al. (2021) · Journal of Human Genetics · doi:10.1038/s10038-021-00980-4 · Cited by 10
Dissecting Meta-Analysis in GWAS Era: Bayesian Framework for Gene/Subnetwork-Specific Meta-Analysis
Chimusa, E. R., & Defo, J. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.838518 · Cited by 10
“In the last decade, the use of meta-analysis method has increased due to different interests from both the medical researchers and statisticians Shi and Lee (2016); Fan et al. (2016); Turley et al. (2018).”
BackgroundMethodMulti-PGS enhances polygenic prediction: weighting 937 polygenic scoresPreprint
Albiñana, C., Zhu, Z., Schork, A. J., Ingason, A., Aschard, H., Brikell, I., Bulik, C. M., Pedersen, L. V., Agerbo, E., Grove, J., et al. (2022) · medRxiv · doi:10.1101/2022.09.14.22279940 · Cited by 10
Self-citationLi, Y., Xiong, Z., Zhang, M., Hysi, P. G., Qian, Y., Adhikari, K., Weng, J., Wu, S., Du, S., Gonzalez-Jose, R., et al. (2023) · PLOS Genetics · doi:10.1371/journal.pgen.1010786 · Cited by 9
Genetic Links Between Metabolic Syndrome and Osteoarthritis: Insights From Cross-Trait Analysis
Huang, J.-X., Xu, S.-Z., Tian, T., Wang, J., Jiang, L.-Q., He, T., Meng, S., Ni, J., & Pan, H. (2024) · The Journal of Clinical Endocrinology & Metabolism · doi:10.1210/clinem/dgae169 · Cited by 10
Yu, S., Lin, Y., Yang, Y., Jin, X., Liao, B., Lu, D., & Huang, J. (2024) · Human Genomics · doi:10.1186/s40246-024-00627-3 · Cited by 8
“Moreover, MTAG association statistics provide additional power and minimal inflation of the FDR for each trait examined with high correlation, aligning with theoretical expectations [32].”
BackgroundMethodWestergaard, D., Jørgensen, F. H., Waaben, J., Jung, A. W., Lademann, M., Hansen, T. F., Cremers, J., Ostrowski, S. R., Pedersen, O. B., Reguant, R., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-51795-8 · Cited by 12
“Large studies of genetic correlations have been used to identify previously unrealized similar disorders and suggest new nosologies 8,13 .”
Wang, C., Markus, H., Diwadkar, A. R., Khunsriraksakul, C., Carrel, L., Li, B., Zhong, X. Y., Wang, X., Zhan, X., Foulke, G., et al. (2025) · Nature Communications · doi:10.1038/s41467-024-55636-6 · Cited by 9
The Genetics of Partnership Dissolution
Jørgensen, R. E., Cheesman, R., Andreassen, O. A., & Lyngstad, T. H. (2025) · Sociological Science · doi:10.15195/v12.a4 · Cited by 9
Huang, Z., & Yuan, W. (2025) · Frontiers in Nutrition · doi:10.3389/fnut.2025.1468457 · Cited by 9
Progress in Translating Glaucoma Genetics Into the Clinic: A Review
Kolovos, A., Maxwell, G., Souzeau, E., & Craig, J. E. (2025) · Clinical and Experimental Ophthalmology · doi:10.1111/ceo.14500 · Cited by 9
“The genetic power of endophenotypes can be leveraged through a method known as multi-trait analysis of GWAS (MTAG) [58].”
Kim, J. P., Cho, M., Kim, C., Lee, H., Jang, B., Jung, S., Kim, Y., Koh, I. G., Kim, S., Shin, D., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-59949-y · Cited by 10
Self-citationShared genetic architecture contributes to risk of major cardiovascular diseases
Qiao, J., Jiang, L., Cai, L., Chang, M., Wang, C., Zhao, R., Song, S., Zhao, Y., Chen, M., Ding, S., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-62419-0 · Cited by 12
“Building on this, we conducted cross-trait GWAS meta-analyses using the MTAG method 16 to enhance the identi fi cation of novel genetic associations for each CVD by pinpointing pleiotropic SNPs contributing to CVD susceptibility.”
InfluentialEnzan, N., Miyazawa, K., Koyama, S., Kurosawa, R., Ieki, H., Yoshida, H., Takechi, F., Fukuyama, M., Osako, R., Tomizuka, K., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-64659-6 · Cited by 11
“This resulted in mapping from genes to phenotypes in animals (Supplementary Data 20, 33, and 44).”
InfluentialDissecting the genetic and proteomic risk factors for delirium
Raptis, V., Bhak, Y., Cannings, T. I., MacLullich, A. M. J., & Tenesa, A. (2025) · Nature Aging · doi:10.1038/s43587-025-01018-6 · Cited by 9
“Such approach increases statistical power to detect genetic associations for each trait 34 .”
InfluentialKany, S., Rämö, J. T., Hou, C. R., Jurgens, S. J., Khurshid, S. S., Nauffal, V., Cunningham, J. W., Lau, E. S., Koyama, S., FinnGen, et al. (2025) · Nature Genetics · doi:10.1038/s41588-025-02397-7 · Cited by 11
“Having established that quantitative aortic valve measurements were heritable biomarkers for aortic valve stenosis, we pursued MTAG to incorporate information from these related traits 29 .”
InfluentialTopic modeling identifies novel genetic loci associated with multimorbidities in UK Biobank
Zhang, Y., Jiang, X., Mentzer, A. J., McVean, G., & Lunter, G. A. (2023) · Cell Genomics · doi:10.1016/j.xgen.2023.100371 · Cited by 13
Gallego-Fábrega, C., Temprano‐Sagrera, G., Cárcel‐Márquez, J., Muiño, E., Cullell, N., Lledós, M., Llucià‐Carol, L., Martín-Campos, J. M., Sobrino, T., Castillo, J., et al. (2023) · Journal of Thrombosis and Haemostasis · doi:10.1016/j.jtha.2023.11.027 · Cited by 9
“Multitrait analysis [26,27] is similar to meta-analysis in which 2 GWAS datasets from related phenotypes are combined to boost the power and aid the identification of new shared loci among them.”
Method
Metadata
- Authors
- 23andMe Research Team, Turley, P., Social Science Genetic Association Consortium, Walters, R. K., Maghzian, O., Okbay, A., Lee, J. J., Fontana, M. A., Nguyen-Viet, T. A., Wedow, R., Zacher, M., Furlotte, N. A., Magnusson, P., Oskarsson, S., Johannesson, M., Visscher, P. M., Laibson, D., Cesarini, D., Neale, B. M., & Benjamin, D. J.
- Affiliations
- Broad Institute (US)
- Harvard University (US)
- Vrije Universiteit Amsterdam (NL)
- University of Minnesota (US)
- Hospital for Special Surgery (US)
- University of Southern California (US)
- University of Colorado Boulder (US)
- 23andMe (United States) (US)
- Karolinska Institutet (SE)
- Uppsala University (SE)
- Stockholm School of Economics (SE)
- The University of Queensland (AU)
- National Bureau of Economic Research (US)
- Corresponding author
- Turley, Patrick
- Cesarini, David
- Neale, Benjamin M.
- Benjamin, Daniel J.
- ORCID
- Venue
- Nature Genetics
- Published
- 2018-01-01
- Volume
- 50
- Issue
- 2
- Pages
- 229-237
- ISSN
- 1061-4036 (ISSN-L)
- 1546-1718
- PMC
- PMC5805593
- OpenAlex
- W2780560743
- Cited by
- 1,112
- References
- 34
- Citations by year
- 2026: 132 · 2025: 181 · 2024: 173 · 2023: 158 · 2022: 139 · 2021: 115 · 2020: 88 · 2019: 88 · 2018: 37
- FWCI
- 38.75
- Type
- journal article
- Language
- en
- Update notices
- Open access
- bronze
- doi.org
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Genetics (publishedVersion)
- PubMed (publishedVersion)
- VU Research Portal (publishedVersion, other-oa)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- Max Planck Digital Library (submittedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- Funders
- National Science Foundation (1144083)
- University of Southern California
- Wellcome Trust (213422/Z/18/Z)
- Broad Institute
- Vetenskapsrådet (421-2013-1061)
- National Institutes of Health (MH107649)
- Medical Research Council (MR/N01104X/1, MR/N01104X/2)
- Economic and Social Research Council (ES/S008349/1)
- National Institute on Aging (T32AG000186, AG005842, R01AG042568, P01AG005842, P30AG012810, P30AG034532)
- National Institute of Mental Health (U01MH109539, R01MH107649, R01MH101244)
- Eunice Kennedy Shriver National Institute of Child Health and Human Development (P01HD031921, R01HD073342, R01HD060726)
- H2020 European Research Council (647648)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Mapping and Diversity in Plants and Animals
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic and phenotypic traits in livestock
- Keywords
- multi-trait analysis, MTAG, genome-wide association summary statistics, depressive symptoms, neuroticism, subjective well-being, polygenic risk score, genetic loci, personality traits, overlapping samples
- MeSH terms
- Neuroticism, Algorithms, Data Interpretation, Statistical, Depression, Health, Humans, Phenotype, Meta-Analysis as Topic, Multifactorial Inheritance, Polymorphism, Single Nucleotide, Quantitative Trait Loci, Genome-Wide Association Study, Genetic Association Studies, Diagnostic Self Evaluation, Datasets as Topic
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