The DOI matches its Crossref record; 22 of the 22 references it cites were found in a registry or an index.
Qiita: rapid, web-enabled microbiome meta-analysis
Open accessAbstract
Multi-omic insights into microbiome function and composition typically advance one study at a time. However, in order for relationships across studies to be fully understood, data must be aggregated into meta-analyses. This makes it possible to generate new hypotheses by finding features that are reproducible across biospecimens and data layers. Qiita dramatically accelerates such integration tasks in a web-based microbiome-comparison platform, which we demonstrate with Human Microbiome Project and Integrative Human Microbiome Project (iHMP) data. The Qiita web platform provides access to large amounts of public microbial multi-omic data and enables easy analysis and meta-analysis of standardized private and public data.
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Citations
Cites
QIIME allows analysis of high-throughput community sequencing data
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887
Self-citationStructure, function and diversity of the healthy human microbiome
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Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
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Self-citationUniFrac: a New Phylogenetic Method for Comparing Microbial Communities
Lozupone, C., & Knight, R. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.12.8228-8235.2005 · Cited by 8,227
Self-citationWang, M., Carver, J. J., Phelan, V. V., Sanchez, L. M., Garg, N., Peng, Y., Nguyen, D. D., Watrous, J., Kapono, C. A., Luzzatto-Knaan, T., et al. (2016) · Nature Biotechnology · doi:10.1038/nbt.3597 · Cited by 4,629
Self-citationQuality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
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Self-citationThe Treatment-Naive Microbiome in New-Onset Crohn’s Disease
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Self-citationA communal catalogue reveals Earth's multiscale microbial diversity
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Self-citationDeblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
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Cited by
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
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Self-citationMulti-omics of the gut microbial ecosystem in inflammatory bowel diseases
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Self-citationThe microbiome and human cancer
Sepich-Poore, G. D., Zitvogel, L., Straussman, R., Hasty, J., Wargo, J. A., & Knight, R. (2021) · Science · doi:10.1126/science.abc4552 · Cited by 1,332
Self-citationDeciphering cell–cell interactions and communication from gene expression
Armingol, E., Officer, A., Harismendy, O., & Lewis, N. E. (2021) · Nature Reviews Genetics · doi:10.1038/s41576-020-00292-x · Cited by 1,267
Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice
Sharon, G., Cruz, N. J., Kang, D.-W., Gandal, M. J., Wang, B., Kim, Y.-M., Zink, E. M., Casey, C. P., Taylor, B. C., Lane, C. J., et al. (2019) · Cell · doi:10.1016/j.cell.2019.05.004 · Cited by 1,182
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Metadata
- Authors
- Gonzalez, A., Navas-Molina, J. A., Kosciolek, T., McDonald, D., Vázquez-Baeza, Y., Ackermann, G., DeReus, J., Janssen, S., Swafford, A. D., Orchanian, S. B., Sanders, J. G., Shorenstein, J., Holste, H., Petrus, S., Robbins-Pianka, A., Brislawn, C. J., Wang, M., Rideout, J. R., Bolyen, E., Dillon, M., Caporaso, J. G., Dorrestein, P. C., & Knight, R.
- Venue
- Nature Methods
- Published
- 2018-10
- Volume
- 15
- Issue
- 10
- Pages
- 796-798
- ISSN
- 1548-7091 (ISSN-L)
- 1548-7105
- OpenAlex
- W2892206041
- Cited by
- 624
- References
- 22
- FWCI
- 18.83
- Type
- journal article
- Language
- en
- Open access
- green
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- Gonzalez, A., Navas-Molina, J. A., Kosciolek, T., McDonald, D., Vázquez-Baeza, Y., Ackermann, G., DeReus, J., Janssen, S., Swafford, A. D., Orchanian, S. B., Sanders, J. G., Shorenstein, J., Holste, H., Petrus, S., Robbins-Pianka, A., Brislawn, C. J., Wang, M., Rideout, J. R., Bolyen, E., . . . Knight, R. (2018). Qiita: rapid, web-enabled microbiome meta-analysis. Nature Methods. https://doi.org/10.1038/s41592-018-0141-9
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