The role of tubulin–tubulin lattice contacts in the mechanism of microtubule dynamic instability
Open accessAbstract
Microtubules form from longitudinally and laterally assembling tubulin α-β dimers. The assembly induces strain in tubulin, resulting in cycles of microtubule catastrophe and regrowth. This 'dynamic instability' is governed by GTP hydrolysis that renders the microtubule lattice unstable, but it is unclear how. We used a human microtubule nucleating and stabilizing neuronal protein, doublecortin, and high-resolution cryo-EM to capture tubulin's elusive hydrolysis intermediate GDP•Pi state, alongside the prehydrolysis analog GMPCPP state and the posthydrolysis GDP state with and without an anticancer drug, Taxol. GTP hydrolysis to GDP•Pi followed by Pi release constitutes two distinct structural transitions, causing unevenly distributed compressions of tubulin dimers, thereby tightening longitudinal and loosening lateral interdimer contacts. We conclude that microtubule catastrophe is triggered because the lateral contacts can no longer counteract the strain energy stored in the lattice, while reinforcement of the longitudinal contacts may support generation of force.
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Such regional variation is consistent with previous studies and suggests that lattice conformation can be locally influenced by lattice-binding microtubule-associated proteins, post-translational modifications, mechanical stress, or repair processes.
“Such regional variation is consistent with previous studies58and suggest that lattice conformation can be locally influenced by lattice-binding microtuble-associated proteins (MAPs)59–61, post-translational modifications, mechanical stress50,51, or repair processes62–66.”
From Ghost Neuron preparation unlocks high-resolution structural mapping of intracellular architecture in axons (2026) · cites this paper as [50]
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Experimental — accuracy not yet measuredMicrotubule lattice spacing has classically been linked to nucleotide state, with expanded lattices associated with GTP-like states and compact lattices associated with GDP-tubulin.
“Microtubule lattice spacing has classically been linked to nucleotide state, with expanded lattices associated with GTP-like states and compact lattices associated with GDP-tubulin45,50,51.”
From Ghost Neuron preparation unlocks high-resolution structural mapping of intracellular architecture in axons (2026) · cites this paper as [50]
The classical view describes newly polymerized plus ends, where GTP-tubulin is incorporated and subsequently hydrolyzed as microtubules mature.
“This classical view describes newly polymerized plus ends, where GTP-tubulin is incorporated and subsequently hydrolyzed as the microtubules mature45,50,51.”
From Ghost Neuron preparation unlocks high-resolution structural mapping of intracellular architecture in axons (2026) · cites this paper as [50]
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- [1]Mandelkow EM Mandelkow E Milligan RA Microtubule dynamics and microtubule caps: a time-resolved cryo-electron microscopy study J Cell Biol 1991 114 977 991 1874792 PMC2289108
- [2]Rice LM Montabana EA Agard DA The lattice as allosteric effector: structural studies of alphabeta- and gamma-tubulin clarify the role of GTP in microtubule assembly Proc Natl Acad Sci U S A 2008 105 5378 5383 18388201 PMC2291134
- [3]Driver JW Geyer EA Bailey ME Rice LM Asbury CL Direct measurement of conformational strain energy in protofilaments curling outward from disassembling microtubule tips eLife 2017 6 PMC5515574 28628007
- [4]Mitchison T Kirschner M Dynamic instability of microtubule growth Nature 1984 312 237 242 6504138
- [5]Coue M Lombillo VA McIntosh JR Microtubule depolymerization promotes particle and chromosome movement in vitro J Cell Biol 1991 112 1165 1175 1999468 PMC2288901
- [6]Nogales E Wolf SG Downing KH Structure of the alpha beta tubulin dimer by electron crystallography Nature 1998 391 199 203 9428769
- [7]Löwe J Li H Downing KH Nogales E Refined structure of alpha beta-tubulin at 3.5 A resolution J Mol Biol 2001 313 1045 1057 11700061
- [8]Guesdon A EB1 interacts with outwardly curved and straight regions of the microtubule lattice Nat Cell Biol 2016 18 1102 1108 27617931
- [9]Alushin GM High-resolution microtubule structures reveal the structural transitions in αβ-tubulin upon GTP hydrolysis Cell 2014 157 1117 1129 24855948 PMC4054694
- [10]Zhang R Alushin GM Brown A Nogales E Mechanistic Origin of Microtubule Dynamic Instability and Its Modulation by EB Proteins Cell 2015 162 849 859 26234155 PMC4537847
- [11]Vale RD Coppin CM Malik F Kull FJ Milligan RA Tubulin GTP hydrolysis influences the structure, mechanical properties, and kinesin-driven transport of microtubules J Biol Chem 1994 269 23769 23775 7916345
- [12]Hyman AA Chrétien D Arnal I Wade RH Structural changes accompanying GTP hydrolysis in microtubules: information from a slowly hydrolyzable analogue guanylyl-(alpha,beta)-methylene-diphosphonate J Cell Biol 1995 128 117 125 7822409 PMC2120325
- [13]Maurer SP Fourniol FJ Bohner G Moores CA Surrey T EBs recognize a nucleotide-dependent structural cap at growing microtubule ends Cell 2012 149 371 382 22500803 PMC3368265
- [14]Maurer SP Bieling P Cope J Hoenger A Surrey T GTPgammaS microtubules mimic the growing microtubule end structure recognized by end-binding proteins (EBs) Proc Natl Acad Sci U S A 2011 108 3988 3993 21368119 PMC3053978
- [15]Maurer SP EB1 accelerates two conformational transitions important for microtubule maturation and dynamics Curr Biol CB 2014 24 372 384 24508171 PMC3969257
- [16]Moores CA Mechanism of microtubule stabilization by doublecortin Mol Cell 2004 14 833 839 15200960
- [17]Fourniol FJ Template-free 13-protofilament microtubule-MAP assembly visualized at 8 A resolution J Cell Biol 2010 191 463 470 20974813 PMC3003314
- [18]Hyman AA Salser S Drechsel DN Unwin N Mitchison TJ Role of GTP hydrolysis in microtubule dynamics: information from a slowly hydrolyzable analogue, GMPCPP Mol Biol Cell 1992 3 1155 1167 1421572 PMC275679
- [19]Kellogg EH Insights into the Distinct Mechanisms of Action of Taxane and Non-Taxane Microtubule Stabilizers from Cryo-EM Structures J Mol Biol 2017 429 633 646 28104363 PMC5325780
- [20]Kikumoto M Kurachi M Tosa V Tashiro H Flexural rigidity of individual microtubules measured by a buckling force with optical traps Biophys J 2006 90 1687 1696 16339879 PMC1367319
- [21]Ettinger A van Haren J Ribeiro SA Wittmann T Doublecortin Is Excluded from Growing Microtubule Ends and Recognizes the GDP-Microtubule Lattice Curr Biol CB 2016 26 1549 1555 27238282 PMC5023073
- [22]Vemu A Atherton J Spector JO Moores CA Roll-Mecak A Tubulin isoform composition tunes microtubule dynamics Mol Biol Cell 2017 28 3564 3572 29021343 PMC5706985
- [23]Zakharov P Molecular and Mechanical Causes of Microtubule Catastrophe and Aging Biophys J 2015 109 2574 2591 26682815 PMC4701015
- [24]Prota AE Molecular mechanism of action of microtubule-stabilizing anticancer agents Science 2013 339 587 590 23287720
- [25]Wang Y Structural Insights into the Pharmacophore of Vinca Domain Inhibitors of Microtubules Mol Pharmacol 2016 89 233 242 26660762
- [26]Prota AE Pironetin Binds Covalently to αCys316 and Perturbs a Major Loop and Helix of α-Tubulin to Inhibit Microtubule Formation J Mol Biol 2016 428 2981 2988 27395016
- [27]Doodhi H Termination of Protofilament Elongation by Eribulin Induces Lattice Defects that Promote Microtubule Catastrophes Curr Biol CB 2016 26 1713 1721 27321995
- [28]Nawrotek A Knossow M Gigant B The determinants that govern microtubule assembly from the atomic structure of GTP-tubulin J Mol Biol 2011 412 35 42 21787788
- [29]Mickey B Howard J Rigidity of microtubules is increased by stabilizing agents J Cell Biol 1995 130 909 917 7642706 PMC2199951
- [30]Bechstedt S Lu K Brouhard GJ Doublecortin recognizes the longitudinal curvature of the microtubule end and lattice Curr Biol CB 2014 24 2366 2375 25283777
- [31]Field JJ Díaz JF Miller JH The Binding Sites of Microtubule-Stabilizing Agents Chem Biol 2013 20 301 315 23521789
- [32]Gardner MK Zanic M Gell C Bormuth V Howard J Depolymerizing kinesins Kip3 and MCAK shape cellular microtubule architecture by differential control of catastrophe Cell 2011 147 1092 1103 22118464
- [33]Xu Z Microtubules acquire resistance from mechanical breakage through intralumenal acetylation Science 2017 356 328 332 28428427 PMC5457157
- [34]Portran D Schaedel L Xu Z Théry M Nachury MV Tubulin acetylation protects long-lived microtubules against mechanical ageing Nat Cell Biol 2017 19 391 398 28250419 PMC5376231
- [35]Chen S High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy Ultramicroscopy 2013 135 24 35 23872039 PMC3834153
- [36]Zheng SQ MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy Nat Methods 2017 14 331 332 28250466 PMC5494038
- [37]Ludtke SJ Baldwin PR Chiu W EMAN: semiautomated software for high-resolution single-particle reconstructions J Struct Biol 1999 128 82 97 10600563
- [38]Sindelar CV Downing KH The beginning of kinesin’s force-generating cycle visualized at 9-A resolution J Cell Biol 2007 177 377 385 17470637 PMC2064809
- [39]Fourniol FJ Template-free 13-protofilament microtubule-MAP assembly visualized at 8 A resolution J Cell Biol 2010 191 463 470 20974813 PMC3003314
- [40]Frank J SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields J Struct Biol 1996 116 190 199 8742743
- [41]Grigorieff N FREALIGN: high-resolution refinement of single particle structures J Struct Biol 2007 157 117 125 16828314
- [42]Mindell JA Grigorieff N Accurate determination of local defocus and specimen tilt in electron microscopy J Struct Biol 2003 142 334 347 12781660
- [43]Scheres SHW RELION: implementation of a Bayesian approach to cryo-EM structure determination J Struct Biol 2012 180 519 530 23000701 PMC3690530
- [44]Rosenthal PB Henderson R Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy J Mol Biol 2003 333 721 745 14568533
- [45]Pettersen EF UCSF Chimera--a visualization system for exploratory research and analysis J Comput Chem 2004 25 1605 1612 15264254
- [46]Chen VB MolProbity: all-atom structure validation for macromolecular crystallography Acta Crystallogr D Biol Crystallogr 2010 66 12 21 20057044 PMC2803126
- [47]Emsley P Lohkamp B Scott WG Cowtan K Features and development of Coot Acta Crystallogr D Biol Crystallogr 2010 66 486 501 20383002 PMC2852313
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Microtubule lattice state regulates Rho GTPase
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Bodakuntla, S., Marelli, J., Vasquez-Montes, V., Glauser, S., Biertümpfel, C., & Mizuno, N. (2026) · Nature Communications · doi:10.1038/s41467-026-77741-4
- Authors
- Manka, S. W., & Moores, C. A.
- Affiliations
- University of London (GB)
- Corresponding author
- Manka, Szymon W.
- Moores, Carolyn A.
- Venue
- Nature Structural & Molecular Biology
- Published
- 2018-07
- Volume
- 25
- Issue
- 7
- Pages
- 607-615
- ISSN
- 1545-9985 (ISSN-L)
- 1545-9993
- PMC
- PMC6201834
- OpenAlex
- W2809813558
- Cited by
- 159
- References
- 0
- Citations by year
- 2026: 17 · 2025: 27 · 2024: 15 · 2023: 25 · 2022: 18 · 2021: 17 · 2020: 17 · 2019: 19 · 2018: 4
- FWCI
- 7.80
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Structural & Molecular Biology (publishedVersion)
- PubMed (publishedVersion)
- BIROn (Birkbeck, University of London) (acceptedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- UCL Discovery (University College London) (submittedVersion)
- Funders
- Medical Research Council (MR/J000973/1, MR/R000352/1)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Microtubule and mitosis dynamics
- Health Sciences › Medicine › Oncology › Cancer Treatment and Pharmacology
- Physical Sciences › Chemistry › Organic Chemistry › Synthesis and biological activity
- Keywords
- microtubule dynamic instability, GTP hydrolysis, GMPCPP, paclitaxel, doublecortin, microtubule catastrophe, microtubule nucleation, microtubule stabilization
- MeSH terms
- Doublecortin Domain Proteins, Guanine Nucleotides, Humans, Microtubule-Associated Proteins, Microtubules, Models, Biological, Models, Molecular, Neuropeptides, Tubulin, Cryoelectron Microscopy, GTP Phosphohydrolases, Protein Interaction Domains and Motifs, Protein Multimerization, Protein Stability, Biophysical Phenomena
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