Cited by 67melanin and skin pigmentationZebrafish Biomedical Research ApplicationsDevelopmental Biology and Gene Regulation

Countershading in zebrafish results from an Asip1 controlled dorsoventral gradient of pigment cell differentiation

Open access
Cal, Laura, Suarez-Bregua, Paula, Comesaña, Pilar, Owen, Jennifer, Braasch, Ingo, Kelsh, Robert, Cerdá-Reverter, José Miguel, Rotllant, Josep·2019·Scientific Reports

Abstract

Dorso-ventral (DV) countershading is a highly-conserved pigmentary adaptation in vertebrates. In mammals, spatially regulated expression of agouti-signaling protein (ASIP) generates the difference in shading by driving a switch between the production of chemically-distinct melanins in melanocytes in dorsal and ventral regions. In contrast, fish countershading seemed to result from a patterned DV distribution of differently-coloured cell-types (chromatophores). Despite the cellular differences in the basis for counter-shading, previous observations suggested that Agouti signaling likely played a role in this patterning process in fish. To test the hypotheses that Agouti regulated counter-shading in fish, and that this depended upon spatial regulation of the numbers of each chromatophore type, we engineered asip1 homozygous knockout mutant zebrafish. We show that loss-of-function asip1 mutants lose DV countershading, and that this results from changed numbers of multiple pigment cell-types in the skin and on scales. Our findings identify asip1 as key in the establishment of DV countershading in fish, but show that the cellular mechanism for translating a conserved signaling gradient into a conserved pigmentary phenotype has been radically altered in the course of evolution.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/s41598-019-40251-z

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Asip1 and the orthologous protein of mammals, Asip, are Melanocortin-1 receptor (Mc1r) antagonists and their ventral expression inhibits differentiation of melanophores and melanocytes, respectively, resulting in light bellies.

    “Asip1 and the orthologous protein of mammals, Asip, are Melanocortin-1 receptor (Mc1r) antagonists and their ventral expression inhibits differentiation of melanophores and melanocytes, respectively, resulting in light bellies (24–27).”

    From Agouti and BMP signaling drive a naturally occurring fate conversion of melanophores to leucophores in zebrafish (2025) · cites this paper as [26]

    The Discussion supports the zebrafish portion: it reports that Asip1 binds Mc1r as an antagonist and represses ventral melanophore differentiation. But the Introduction and Discussion describe mammalian ASIP as changing the type of melanin produced by melanocytes, not inhibiting melanocyte differentiation. The claimed mechanism for mammalian light bellies is therefore not supported. (LLM, conf=0.90)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 35

  1. [1]Millar SE Miller MW Stevens ME Barsh GS Expression and transgenic studies of the mouse agouti gene provide insight into the mechanisms by which mammalian coat color patterns are generated Development 1995 121 3223 3232 7588057
  2. [2]Manceau M Domingues VS Mallarino R Hoekstra HE The developmental role of agouti in color pattern evolution Science 2011 331 1062 1065 10.1126/science.1200684 21350176 · DOI · Paper page
  3. [3]Fujii, R. In The Physiology of Fishes (ed. Evans, D.) 535–562 (FL CRC Press, 1993).
  4. [4]Schartl M What is a vertebrate pigment cell? Pigment Cell Melanoma Res. 2016 29 1 8 10.1111/pcmr.12409 26247887 · DOI
  5. [5]Hirata M Nakamura K Kanemaru T Shibata Y Kondo S Pigment cell organization in the hypodermis of zebrafish Dev. Dyn. 2003 227 497 503 10.1002/dvdy.10334 12889058 · DOI
  6. [6]Hirata M Nakamura K-I Kondo S Pigment cell distributions in different tissues of the zebrafish, with special reference to the striped pigment pattern Dev. Dyn. 2005 234 293 300 10.1002/dvdy.20513 16110504 · DOI
  7. [7]Kottler VA Künstner A Schartl M Pheomelanin in fish? Pigment Cell Melanoma Res. 2015 28 355 356 10.1111/pcmr.12359 25660115 · DOI
  8. [8]Ceinos RM Guillot R Kelsh RN Cerdá-Reverter JM Rotllant J Pigment patterns in adult fish result from superimposition of two largely independent pigmentation mechanisms Pigment Cell Melanoma Res. 2015 28 196 209 10.1111/pcmr.12335 25469713 · DOI
  9. [9]Frohnhöfer HG Krauss J Maischein H-M Nüsslein-Volhard C Iridophores and their interactions with other chromatophores are required for stripe formation in zebrafish Development 2013 140 2997 3007 10.1242/dev.096719 23821036 PMC3912879 · DOI · Paper page
  10. [10]Irion U Singh AP Nüsslein-Volhard C The developmental genetics of vertebrate color pattern formation: lessons from zebrafish Curr. Top. Dev. Biol. 2016 117 141 169 10.1016/bs.ctdb.2015.12.012 26969976 · DOI · Paper page
  11. [11]Cerdá-Reverter JM Haitina T Schiöth HB Peter RE Gene structure of the goldfish agouti-signaling protein: a putative role in the dorsal-ventral pigment pattern of fish Endocrinology 2005 146 1597 1610 10.1210/en.2004-1346 15591139 · DOI
  12. [12]Guillot R Ceinos RM Cal R Rotllant J Cerdá-Reverter JM Transient ectopic overexpression of agouti-signalling protein 1 (Asip1) induces pigment anomalies in flatfish PLoS One 2012 7 e48526 10.1371/journal.pone.0048526 23251332 PMC3519472 · DOI
  13. [13]Cal L BAC Recombineering of the agouti loci from spotted gar and zebrafish reveals the evolutionary ancestry of dorsal–ventral pigment asymmetry in fish J. Exp. Zool. Part B Mol. Dev. Evol. 2017 328 697 708 10.1002/jez.b.22748 PMC5653409 28544213 · DOI
  14. [14]Bassett AR Tibbit C Ponting CP Liu JL Highly efficient targeted mutagenesis of drosophila with the CRISPR/Cas9 system Cell Rep. 2013 4 220 228 10.1016/j.celrep.2013.06.020 23827738 PMC3714591 · DOI
  15. [15]Manne J Argeson AC Siracusa LD Mechanisms for the pleiotropic effects of the agouti gene Proc Natl Acad Sci USA 1995 92 4721 4724 10.1073/pnas.92.11.4721 7761389 PMC41778 · DOI
  16. [16]McNulty JC Structures of the agouti signaling protein J. Mol. Biol. 2005 346 1059 1070 10.1016/j.jmb.2004.12.030 15701517 · DOI
  17. [17]Patel MP Loop swapped chimeras of the agouti-related protein (agrp) and the agouti signaling protein (ASIP) identify contacts required for melanocortin 1 receptor (MC1R) selectivity and antagonism J. Mol. Biol. 2010 404 45 55 10.1016/j.jmb.2010.08.054 20831872 PMC2972358 · DOI
  18. [18]Kelsh RN Genetics and evolution of pigment patterns in fish Pigment Cell Res. 2004 17 326 336 10.1111/j.1600-0749.2004.00174.x 15250934 · DOI
  19. [19]Parichy DM Elizondo MR Mills MG Gordon TN Engeszer RE Normal table of postembryonic zebrafish development: staging by externally visible anatomy of the living fish Dev. Dyn. 2009 238 2975 3015 10.1002/dvdy.22113 19891001 PMC3030279 · DOI · Paper page
  20. [20]Anelli V Global repression of cancer gene expression in a zebrafish model of melanoma is linked to epigenetic regulation Zebrafish 2009 6 417 424 10.1089/zeb.2009.0612 20047469 · DOI
  21. [21]Levesque MP Krauss J Koehler C Boden C Harris MP New tools for the identification of developmentally regulated enhancer regions in embryonic and adult zebrafish Zebrafish 2013 10 21 29 10.1089/zeb.2012.0775 23461416 PMC3670562 · DOI
  22. [22]Michaud EJ Bultman SJ Stubbs LJ Woychik RP The embryonic lethality of homozygous lethal yellow mice [Ay/Ay] is associated with the disruption of a novel RNA-binding protein Genes Dev. 1993 7 1203 1213 10.1101/gad.7.7a.1203 8319910 · DOI
  23. [23]Miller MW Cloning of the mouse agouti gene predicts a secreted protein ubiquitously expressed in mice carrying the lethal yellow mutation Genes Dev. 1993 7 454 467 10.1101/gad.7.3.454 8449404 · DOI
  24. [24]Guillot R Behind melanocortin antagonist overexpression in the zebrafish brain: a behavioral and transcriptomic approach Horm. Behav. 2016 82 87 100 10.1016/j.yhbeh.2016.04.011 27156808 · DOI
  25. [25]Sánchez E Rubio VC Cerdá-Reverter JM Molecular and pharmacological characterization of the melanocortin type 1 receptor in the sea bass Gen. Comp. Endocrinol. 2010 165 163 169 10.1016/j.ygcen.2009.06.008 19539622 · DOI
  26. [27]Parichy DM Ransom DG Paw B Zon LI Johnson SL An orthologue of the kit-related gene fms is required for development of neural crest-derived xanthophores and a subpopulation of adult melanocytes in the zebrafish, Danio rerio Development 2000 127 3031 3044 10862741
  27. [28]Lopes SS Leukocyte tyrosine kinase functions in pigment cell development PLoS Genet. 2008 4 e1000026 10.1371/journal.pgen.1000026 18369445 PMC2265441 · DOI · Paper page
  28. [29]Fukuzawa T Ide H A ventrally localized inhibitor of melanization in Xenopus laevis skin Dev. Biol. 1988 129 25 36 10.1016/0012-1606(88)90158-3 3410161 · DOI
  29. [30]Bagnara JT Fukuzawa T Stimulation of cultured iridophores by amphibian ventral conditioned media Pigment cell Melanoa Res. 1990 3 243 250 10.1111/j.1600-0749.1990.tb00296.x 2095576 · DOI
  30. [31]Zuasti A Melanization stimulating factor (MSF) and melanization inhibiting factor (MIF) in the integument of fish Microsc. Res. Tech. 2002 58 488 495 10.1002/jemt.10167 12242706 · DOI
  31. [32]Singh AP Pigment cell progenitors in zebrafish remain multipotent through metamorphosis Dev. Cell 2016 38 316 330 10.1016/j.devcel.2016.06.020 27453500 · DOI · Paper page
  32. [33]Westerfield, M. The Zebrafish Book. A Guide for the Laboratory Use of Zebrafish (Danio rerio) (University of Oregon Press, 2007).
  33. [34]Kimmel CB Ballard WW Kimmel SR Ullmann B Schilling TF Stages of embryonic development of the zebrafish Dev. Dyn. 1995 203 253 310 10.1002/aja.1002030302 8589427 · DOI · Paper page
  34. [35]Kettleborough RN A systematic genome-wide analysis of zebrafish protein-coding gene function Nature 2013 496 494 497 10.1038/nature11992 23594742 PMC3743023 · DOI
  35. [36]Montague, T. G., Cruz, J. M., Gagnon, J. A., Church, G. M. & Valen, E. CHOPCHOP: a CRISPR/Cas9 and TALEN web tool for genome editing. Nucleic Acids Res. 42 (2014). PMC4086086 24861617

Cited by

Sorted by citations

Authors
Cal, L., Suarez-Bregua, P., Comesaña, P., Owen, J., Braasch, I., Kelsh, R., Cerdá-Reverter, J. M., & Rotllant, J.
Affiliations
  • Consejo Superior de Investigaciones Científicas (ES)
  • University of Bath (GB)
  • Michigan State University (US)
Corresponding author
Rotllant, Josep
Venue
Scientific Reports
Published
2019-03-05
Volume
9
Issue
1
Pages
3449-3449
ISSN
2045-2322 (ISSN-L)
OpenAlex
W2920588547
Cited by
67
References
1
Citations by year
2026: 6 · 2025: 7 · 2024: 12 · 2023: 13 · 2022: 3 · 2021: 10 · 2020: 9 · 2019: 7
FWCI
3.81
Type
journal article
Language
en
Open access
Locations
  • Scientific Reports (publishedVersion, cc-by)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • Pure (University of Bath) (publishedVersion, cc-by)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
Funders
Ministerio de Economía y Competitividad (AGL2011-23581, AGL2014-52473R, AGL2017-89648P)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › melanin and skin pigmentation
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Zebrafish Biomedical Research Applications
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
Keywords
countershading, dorsoventral patterning, zebrafish, pigment cell differentiation, chromatophores, melanocytes, melanin, scale, skin pigmentation, loss-of-function mutants
MeSH terms
Loss of Function Mutation, Amino Acid Sequence, Animals, Cell Differentiation, Phenotype, Pigmentation, Zebrafish, Gene Targeting, Body Patterning, Agouti Signaling Protein, Genetic Loci, CRISPR-Cas Systems

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review