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A versatile Halo- and SNAP-tagged BMP/TGFβ receptor library for quantification of cell surface ligand binding
Open accessPublished version of a preprint
Abstract
TGFβs, BMPs and Activins regulate numerous developmental and homeostatic processes and signal through hetero-tetrameric receptor complexes composed of two types of serine/threonine kinase receptors. Each of the 33 different ligands possesses unique affinities towards specific receptor types. However, the lack of specific tools hampered simultaneous testing of ligand binding towards all BMP/TGFβ receptors. Here we present a N-terminally Halo- and SNAP-tagged TGFβ/BMP receptor library to visualize receptor complexes in dual color. In combination with fluorescently labeled ligands, we established a Ligand Surface Binding Assay (LSBA) for optical quantification of receptor-dependent ligand binding in a cellular context. We highlight that LSBA is generally applicable to test (i) binding of different ligands such as Activin A, TGFβ1 and BMP9, (ii) for mutant screens and (iii) evolutionary comparisons. This experimental set-up opens opportunities for visualizing ligand-receptor binding dynamics, essential to determine signaling specificity and is easily adaptable for other receptor signaling pathways.
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Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Structural insights into BMP receptors: Specificity, activation and inhibition
Yadin, D., Knaus, P., & Mueller, T. D. (2016) · Cytokine & Growth Factor Reviews · doi:10.1016/j.cytogfr.2015.11.005 · Cited by 221
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Research works printed but not linked: 62
- Hiepen, C., Yadin, D., Rikeit, P., Dorpholz, G. & Knaus, P. Actions from head to toe: an update on bone/body morphogenetic proteins in health and disease. Cytokine Growth Factor Rev. 27, 1–11 (2016). · DOI
- Nickel, J. & Mueller, T. D. Specification of BMP signaling. Cells 8, https://doi.org/10.3390/cells8121579 (2019). · DOI
- David, L., Mallet, C., Mazerbourg, S., Feige, J. J. & Bailly, S. Identification of BMP9 and BMP10 as functional activators of the orphan activin receptor-like kinase 1 (ALK1) in endothelial cells. Blood 109, 1953–1961 (2007). · DOI
- Salmon, R. M. et al. Molecular basis of ALK1-mediated signalling by BMP9/BMP10 and their prodomain-bound forms. Nat. Commun. 11, 1621 (2020). · DOI
- Heinecke, K. et al. Receptor oligomerization and beyond: a case study in bone morphogenetic proteins. BMC Biol. 7, 59 (2009). · DOI
- Goebel, E. J. et al. Structures of activin ligand traps using natural sets of type I and type II TGFbeta receptors. iScience 25, 103590 (2022). · DOI
- Cheifetz, S. et al. The transforming growth factor-beta system, a complex pattern of cross-reactive ligands and receptors. Cell 48, 409–415 (1987). · DOI
- Martinez-Hackert, E., Sundan, A. & Holien, T. Receptor binding competition: a paradigm for regulating TGF-beta family action. Cytokine Growth Factor Rev. 57, 39–54 (2021). · DOI
- Groppe, J. et al. Cooperative assembly of TGF-beta superfamily signaling complexes is mediated by two disparate mechanisms and distinct modes of receptor binding. Mol. Cell 29, 157–168 (2008). · DOI
- Goebel, E. J. et al. Structural characterization of an activin class ternary receptor complex reveals a third paradigm for receptor specificity. Proc. Natl Acad. Sci. USA 116, 15505–15513 (2019). · DOI
- Townson, S. A. et al. Specificity and structure of a high affinity activin receptor-like kinase 1 (ALK1) signaling complex. J. Biol. Chem. 287, 27313–27325 (2012). · DOI
- Thompson, T. B., Woodruff, T. K. & Jardetzky, T. S. Structures of an ActRIIB:activin A complex reveal a novel binding mode for TGF-beta ligand:receptor interactions. EMBO J. 22, 1555–1566 (2003). · DOI
- Kirsch, T., Nickel, J. & Sebald, W. BMP-2 antagonists emerge from alterations in the low-affinity binding epitope for receptor BMPR-II. EMBO J. 19, 3314–3324 (2000). · DOI
- Chu, K. Y., Malik, A., Thamilselvan, V. & Martinez-Hackert, E. Type II BMP and activin receptors BMPR2 and ACVR2A share a conserved mode of growth factor recognition. J. Biol. Chem. 298, 102076 (2022). · DOI
- Kirsch, T., Sebald, W. & Dreyer, M. K. Crystal structure of the BMP-2–BRIA ectodomain complex. Nat. Struct. Biol. 7, 492–496 (2000). · DOI
- Goebel, E. J., Hart, K. N., McCoy, J. C. & Thompson, T. B. Structural biology of the TGFbeta family. Exp. Biol. Med. 244, 1530–1546 (2019). · DOI
- Greenwald, J. et al. A flexible activin explains the membrane-dependent cooperative assembly of TGF-beta family receptors. Mol. Cell 15, 485–489 (2004). · DOI
- Nohe, A. et al. The mode of bone morphogenetic protein (BMP) receptor oligomerization determines different BMP-2 signaling pathways. J. Biol. Chem. 277, 5330–5338 (2002). · DOI
- Marom, B., Heining, E., Knaus, P. & Henis, Y. I. Formation of stable homomeric and transient heteromeric bone morphogenetic protein (BMP) receptor complexes regulates Smad protein signaling. J. Biol. Chem. 286, 19287–19296 (2011). · DOI
- Guzman, A. et al. SMAD versus non-SMAD signaling is determined by lateral mobility of bone morphogenetic protein (BMP) receptors. J. Biol. Chem. 287, 39492–39504 (2012). · DOI
- Juillerat, A. et al. Directed evolution of O6-alkylguanine-DNA alkyltransferase for efficient labeling of fusion proteins with small molecules in vivo. Chem. Biol. 10, 313–317 (2003). · DOI
- Los, G. V. et al. HaloTag: a novel protein labeling technology for cell imaging and protein analysis. ACS Chem. Biol. 3, 373–382 (2008). · DOI · Paper page
- Bottanelli, F. et al. Two-colour live-cell nanoscale imaging of intracellular targets. Nat. Commun. 7, ARTN 10778 https://doi.org/10.1038/ncomms10778(2016) · DOI
- Poc, P. et al. Interrogating surface versus intracellular transmembrane receptor populations using cell-impermeable SNAP-tag substrates. Chem. Sci. 11, 7871–7883 (2020). · DOI
- Birke, R. et al. Sulfonated red and far-red rhodamines to visualize SNAP and Halo-tagged cell surface proteins. Org. Biomol. Chem. https://doi.org/10.1039/d1ob02216d. (2022). · DOI
- Attisano, L., Wrana, J. L., Cheifetz, S. & Massague, J. Novel activin receptors: distinct genes and alternative mRNA splicing generate a repertoire of serine/threonine kinase receptors. Cell 68, 97–108 (1992). · DOI
- Donaldson, C. J., Mathews, L. S. & Vale, W. W. Molecular cloning and binding properties of the human type II activin receptor. Biochem. Biophys. Res. Commun. 184, 310–316 (1992). · DOI
- Ramachandran, A. et al. Pathogenic ACVR1(R206H) activation by Activin A-induced receptor clustering and autophosphorylation. EMBO J. 40, e106317 (2021). · DOI
- Rossmann, K. et al. N-Methyl deuterated rhodamines for protein labelling in sensitive fluorescence microscopy. Chem. Sci. 13, 8605–8617 (2022). · DOI
- Radaev, S. et al. Ternary complex of transforming growth factor-beta1 reveals isoform-specific ligand recognition and receptor recruitment in the superfamily. J. Biol. Chem. 285, 14806–14814 (2010). · DOI
- Mace, P. D., Cutfield, J. F. & Cutfield, S. M. High resolution structures of the bone morphogenetic protein type II receptor in two crystal forms: implications for ligand binding. Biochem. Biophys. Res. Commun. 351, 831–838 (2006). · DOI
- Luo, J. et al. TGFbeta/BMP type I receptors ALK1 and ALK2 are essential for BMP9-induced osteogenic signaling in mesenchymal stem cells. J. Biol. Chem. 285, 29588–29598 (2010). · DOI
- Kang, Q. et al. Characterization of the distinct orthotopic bone-forming activity of 14 BMPs using recombinant adenovirus-mediated gene delivery. Gene Ther. 11, 1312–1320 (2004). · DOI
- Olsen, O. E. et al. Bone morphogenetic protein-9 suppresses growth of myeloma cells by signaling through ALK2 but is inhibited by endoglin. Blood Cancer J. 4, e196 (2014). · DOI
- Varadi, M. et al. AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models. Nucleic Acids Res. 50, D439–D444 (2022). · DOI · Paper page
- Borgarelli, C. et al. Lighting up the plasma membrane: development and applications of fluorescent ligands for transmembrane proteins. Chemistry 27, 8605–8641 (2021). · DOI
- Siddig, S. et al. Super-resolution imaging reveals the nanoscale organization of metabotropic glutamate receptors at presynaptic active zones. Sci. Adv. 6, eaay7193 (2020). · DOI
- Sahl, S. J., Hell, S. W. & Jakobs, S. Fluorescence nanoscopy in cell biology. Nat. Rev. Mol. Cell Biol. 18, 685–701 (2017). · DOI
- Selvakumar, P. et al. Structural and compositional diversity in the kainate receptor family. Cell Rep. 37, 109891 (2021). · DOI
- Nanda, J. S. & Lorsch, J. R. Labeling a protein with fluorophores using NHS ester derivitization. Methods Enzymol. 536, 87–94 (2014). · DOI
- Alborzinia, H. et al. Quantitative kinetics analysis of BMP2 uptake into cells and its modulation by BMP antagonists. J. Cell Sci. 126, 117–127 (2013). · DOI
- Trujillo, S. et al. Engineered 3D hydrogels with full-length fibronectin that sequester and present growth factors. Biomaterials 252, 120104 (2020). · DOI
- Paarmann, P. et al. Dynamin-dependent endocytosis of Bone Morphogenetic Protein2 (BMP2) and its receptors is dispensable for the initiation of Smad signaling. Int. J. Biochem. Cell Biol. 76, 51–63 (2016). · DOI
- Ast, J. et al. Super-resolution microscopy compatible fluorescent probes reveal endogenous glucagon-like peptide-1 receptor distribution and dynamics (vol. 11, 467, 2020). Nat. Commun. 11, ARTN 5160 https://doi.org/10.1038/s41467-020-19101-4 (2020). · DOI
- Mitchell, E. J. & O’Connor-McCourt, M. D. A transforming growth factor beta (TGF-beta) receptor from human placenta exhibits a greater affinity for TGF-beta 2 than for TGF-beta 1. Biochemistry 30, 4350–4356 (1991). · DOI
- Nishitoh, H. et al. Identification of type I and type II serine/threonine kinase receptors for growth/differentiation factor-5. J. Biol. Chem. 271, 21345–21352 (1996). · DOI
- Rejon, C. A. et al. Activins bind and signal via bone morphogenetic protein receptor type II (BMPR2) in immortalized gonadotrope-like cells. Cell Signal. 25, 2717–2726 (2013). · DOI
- Miller, A. F., Harvey, S. A. K., Thies, R. S. & Olson, M. S. Bone morphogenetic protein-9—an autocrine/paracrine cytokine in the liver. J. Biol. Chem. 275, 17937–17945 (2000). · DOI
- David, L. et al. Bone morphogenetic protein-9 is a circulating vascular quiescence factor. Circ. Res. 102, 914–922 (2008). · DOI
- Mostafa, S. et al. The wonders of BMP9: from mesenchymal stem cell differentiation, angiogenesis, neurogenesis, tumorigenesis, and metabolism to regenerative medicine. Genes Dis. 6, 201–223 (2019). · DOI
- Scharpfenecker, M. et al. BMP-9 signals via ALK1 and inhibits bFGF-induced endothelial cell proliferation and VEGF-stimulated angiogenesis. J. Cell Sci. 120, 964–972 (2007). · DOI
- Lopez-Coviella, I., Berse, B., Krauss, R., Thies, R. S. & Blusztajn, J. K. Induction and maintenance of the neuronal cholinergic phenotype in the central nervous system by BMP-9. Science 289, 313–316 (2000). · DOI
- Azzi, S., Hebda, J. K. & Gavard, J. Vascular permeability and drug delivery in cancers. Front. Oncol. 3, 211 (2013). · DOI
- Lamplot, J. D. et al. BMP9 signaling in stem cell differentiation and osteogenesis. Am. J. Stem Cells 2, 1–21 (2013).
- Li, J. et al. ActRIIB:ALK4-Fc alleviates muscle dysfunction and comorbidities in murine models of neuromuscular disorders. J. Clin. Investig. 131, https://doi.org/10.1172/JCI138634 (2021). · DOI
- Campbell, C. et al. Myostatin inhibitor ACE-031 treatment of ambulatory boys with Duchenne muscular dystrophy: results of a randomized, placebo-controlled clinical trial. Muscle Nerve 55, 458–464 (2017). · DOI
- King, C. et al. Removing T-cell epitopes with computational protein design. Proc. Natl Acad. Sci. USA 111, 8577–8582 (2014). · DOI
- Nivón, L. G., Bjelic, S., King, C. & Baker, D. Automating human intuition for protein design. Proteins: Struct. Funct. Bioinforma. 82, 858–866 (2014). · DOI
- Fleishman, S. J. et al. RosettaScripts: a scripting language interface to the Rosetta macromolecular modeling suite. PLoS ONE 6, e20161 (2011). · DOI
- Khatib, F. et al. Algorithm discovery by protein folding game players. Proc. Natl Acad. Sci. USA 108, 18949–18953 (2011). · DOI
- Maguire, J. B. et al. Perturbing the energy landscape for improved packing during computational protein design. Proteins 89, 436–449 (2021). · DOI · Paper page
- Adolf-Bryfogle, J. et al. Growing glycans in rosetta: accurate de novo glycan modeling, density fitting, and rational sequon design. Preprint at bioRxiv https://doi.org/10.1101/2021.09.27.462000 (2021). · DOI
Metadata
- Authors
- Jatzlau, J., Burdzinski, W., Trumpp, M., Obendorf, L., Roßmann, K., Ravn, K., Hyvönen, M., Bottanelli, F., Broichhagen, J., & Knaus, P.
- Affiliations
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie (DE)
- University of Cambridge (GB)
- Berlin-Brandenburger Centrum für Regenerative Therapien (DE)
- Corresponding author
- Knaus, Petra
- ORCID
- Venue
- Communications Biology
- Published
- 2023-01-12
- Volume
- 6
- Issue
- 1
- Pages
- 34-34
- ISSN
- 2399-3642 (ISSN-L)
- PMC
- PMC9837045
- OpenAlex
- W4315779629
- Cited by
- 20
- References
- 2
- Citations by year
- 2026: 7 · 2025: 5 · 2024: 2 · 2023: 4
- FWCI
- 1.60
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Communications Biology (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Refubium (Universitätsbibliothek der Freien Universität Berlin) (submittedVersion, cc-by)
- Apollo (University of Cambridge) (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Universitätsbibliothek der FU Berlin Hochschulschriftenstelle u. Dokumentenserver (cc-by)
- Apollo
- Apollo (cc-by)
- Funders
- Morbus Osler Society Germany Einstein Center for Regenerative Therapies, Berlin
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › TGF-β signaling in diseases
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Biotin and Related Studies
- Keywords
- ligand-receptor binding, HaloTag, SNAP-tag, TGF-beta signaling, activin A, BMP9, TGF-β1, receptor signaling specificity, mutant screening, receptor evolution
- MeSH terms
- Ligands, Transforming Growth Factor beta, Receptors, Transforming Growth Factor beta, Bone Morphogenetic Proteins, Bone Morphogenetic Protein Receptors
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