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Silencing by plant Polycomb‐group genes requires dispersed trimethylation of histone H3 at lysine 27

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Schubert, Daniel, Primavesi, Lucia, Bishopp, Anthony, Roberts, Gethin, Doonan, John, Jenuwein, Thomas, Goodrich, Justin·2006·The EMBO Journal

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Research works printed but not linked: 54

  1. Annunziato AT (2005) Split decision: what happens to nucleosomes during DNA replication? J Biol Chem 280: 12065–12068 · DOI
  2. Bannister AJ, Schneider R, Kouzarides T (2002) Histone methylation: dynamic or static? Cell 109: 801–806 · DOI
  3. Bastow R, Mylne JS, Lister C, Lippman Z, Martienssen RA, Dean C (2004) Vernalization requires epigenetic silencing of FLC by histone methylation. Nature 427: 164–167 · DOI
  4. Baumbusch LO, Thorstensen T, Krauss V, Fischer A, Naumann K, Assalkhou R, Schulz I, Reuter G, Aalen RB (2001) The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes. Nucleic Acids Res 29: 4319–4333 · DOI · Paper page
  5. Bradley D, Carpenter R, Sommer H, Hartley N, Coen E (1993) Complementary floral homeotic phenotypes result from opposite orientations of a transposon at the plena locus of Antirrhinum. Cell 72: 85–95 · DOI
  6. Busch MA, Bomblies K, Weigel D (1999) Activation of a floral homeotic gene in Arabidopsis. Science 285: 585–587 · DOI
  7. Chan SW, Henderson IR, Jacobsen SE (2005) Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat Rev Genet 6: 351–360 · DOI · Paper page
  8. Chanvivattana Y, Bishopp A, Schubert D, Stock C, Moon YH, Sung ZR, Goodrich J (2004) Interaction of Polycomb‐group proteins controlling flowering in Arabidopsis. Development 131: 5263–5276 · DOI · Paper page
  9. Czermin B, Melfi R, McCabe D, Seitz V, Imhof A, Pirrotta V (2002) Drosophila enhancer of Zeste/ESC complexes have a histone H3 methyltransferase activity that marks chromosomal Polycomb sites. Cell 111: 185–196 · DOI · Paper page
  10. Deyholos MK, Sieburth LE (2000) Separable whorl‐specific expression and negative regulation by enhancer elements within the AGAMOUS second intron. Plant Cell 12: 1799–1810 · DOI
  11. Finnegan E, Kovac KA, Jaligot E, Sheldon CC, James PW, Dennis ES (2005) The downregulation of FLOWERING LOCUS C (FLC) expression in plants with low levels of DNA methylation and by vernalization occurs by distinct mechanisms. Plant J 44: 420–432 · DOI
  12. Finnegan EJ, Sheldon CC, Jardinaud F, Peacock WJ, Dennis ES (2004) A cluster of Arabidopsis genes with a coordinate response to an environmental stimulus. Curr Biol 14: 911–916 · DOI
  13. Fischle W, Wang YM, Allis CD (2003) Binary switches and modification cassettes in histone biology and beyond. Nature 425: 475–479 · DOI · Paper page
  14. Francis NJ, Kingston RE, Woodcock CL (2004) Chromatin compaction by a polycomb group protein complex. Science 306: 1574–1577 · DOI
  15. Gendrel AV, Lippman Z, Yordan C, Colot V, Martienssen RA (2002) Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1. Science 297: 1871–1873 · DOI
  16. Golz JF, Keck EJ, Hudson A (2002) Spontaneous mutations in KNOX genes give rise to a novel floral structure in Antirrhinum. Curr Biol 12: 515–522 · DOI
  17. Goodrich J, Puangsomlee P, Martin M, Long D, Meyerowitz EM, Coupland G (1997) A Polycomb‐group gene regulates homeotic gene expression in Arabidopsis. Nature 386: 44–51 · DOI · Paper page
  18. Goodrich J, Tweedie S (2002) REMEMBRANCE OF THINGS PAST: chromatin remodeling in plant development. Annu Rev Cell Dev Biol 18: 707–746 · DOI
  19. Greene B, Walko R, Hake S (1994) Mutator insertions in an intron of the maize knotted1 gene result in dominant suppressible mutations. Genetics 138: 1275–1285 · DOI
  20. Henikoff S, Furuyama T, Ahmad K (2004) Histone variants, nucleosome assembly and epigenetic inheritance. Trends Genet 20: 320–326 · DOI
  21. Hong RL, Hamaguchi L, Busch MA, Weigel D (2003) Regulatory elements of the floral homeotic gene AGAMOUS identified by phylogenetic footprinting and shadowing. Plant Cell 15: 1296–1309 · DOI
  22. Hsieh TF, Hakim O, Ohad N, Fischer RL (2003) From flour to flower: how Polycomb group proteins influence multiple aspects of plant development. Trends Plant Sci 8: 439–445 · DOI
  23. Jenuwein T, Allis CD (2001) Translating the histone code. Science 293: 1074–1080 · DOI · Paper page
  24. Jullien PE, Katz A, Oliva M, Ohad N, Berger F (2006) Polycomb group complexes self‐regulate imprinting of the Polycomb group gene MEDEA in Arabidopsis. Curr Biol 16: 486–492 · DOI
  25. Katz A, Oliva M, Mosquna A, Hakim O, Ohad N (2004) FIE and CURLY LEAF polycomb proteins interact in the regulation of homeobox gene expression during sporophyte development. Plant J 37: 707–719 · DOI
  26. Kim GT, Tsukaya H, Uchimiya H (1998) The CURLY LEAF gene controls both division and elongation of cells during the expansion of the leaf blade in Arabidopsis thaliana. Planta 206: 175–183 · DOI
  27. Kinoshita T, Harada JJ, Goldberg RB, Fischer RL (2001) Polycomb repression of flowering during early plant development. Proc Natl Acad Sci USA 98: 14156–14161 · DOI
  28. Kuzmichev A, Jenuwein T, Tempst P, Reinberg D (2004) Different EZH2‐containing complexes target methylation of histone H1 or nucleosomal histone H3. Mol Cell 14: 183–193 · DOI
  29. Kuzmichev A, Nishioka K, Erdjument‐Bromage H, Tempst P, Reinberg D (2002) Histone methyltransferase activity associated with a human multiprotein complex containing the Enhancer of Zeste protein. Genes Dev 16: 2893–2905 · DOI · Paper page
  30. Lee TI, Jenner RG, Boyer LA, Guenther MG, Levine SS, Kumar RM, Chevalier B, Johnstone SE, Cole MF, Isono K, Koseki H, Fuchikami T, Abe K, Murray HL, Zucker JP, Yuan B, Bell GW, Herbolsheimer E, Hannett NM, Sun K, Odom DT, Otte AP, Volkert TL, Bartel DP, Melton DA, Gifford DK, Jaenisch R, Young RA (2006) Control of developmental regulators by Polycomb in human embryonic stem cells. Cell 125: 301–313 · DOI
  31. Lindroth AM, Shultis D, Jasencakova Z, Fuchs J, Johnson L, Schubert D, Patnaik D, Pradhan S, Goodrich J, Schubert I, Jenuwein T, Khorasanizadeh S, Jacobsen SE (2004) Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3. EMBO J 23: 4286–4296 · DOI
  32. Ma L, Sun N, Liu X, Jiao Y, Zhao H, Deng XW (2005) Organ‐specific expression of Arabidopsis genome during development. Plant Physiol 138: 80–91 · DOI
  33. Mathieu O, Probst AV, Paszkowski J (2005) Distinct regulation of histone H3 methylation at lysines 27 and 9 by CpG methylation in Arabidopsis. EMBO J 24: 2783–2791 · DOI
  34. Muller J, Hart CM, Francis NJ, Vargas ML, Sengupta A, Wild B, Miller EL, O'Connor MB, Kingston RE, Simon JA (2002) Histone methyltransferase activity of a Drosophila Polycomb group repressor complex. Cell 111: 197–208 · DOI
  35. Mylne JS, Barrett L, Tessadori F, Mesnage S, Johnson L, Bernatavichute YV, Jacobsen SE, Fransz P, Dean C (2006) LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC. Proc Natl Acad Sci USA 103: 5012–5017 · DOI · Paper page
  36. Naumann K, Fischer A, Hofmann I, Krauss V, Phalke S, Irmler K, Hause G, Aurich AC, Dorn R, Jenuwein T, Reuter G (2005) Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis. EMBO J 24: 1418–1429 · DOI
  37. Peters AH, Kubicek S, Mechtler K, O'Sullivan RJ, Derijck AA, Perez‐Burgos L, Kohlmaier A, Opravil S, Tachibana M, Shinkai Y, Martens JH, Jenuwein T (2003) Partitioning and plasticity of repressive histone methylation states in mammalian chromatin. Mol Cell 12: 1577–1589 · DOI · Paper page
  38. Ren XY, Fiers MW, Stiekema WJ, Nap JP (2005) Local coexpression domains of two to four genes in the genome of Arabidopsis. Plant Physiol 138: 923–934 · DOI
  39. Reyes JC, Grossniklaus U (2003) Diverse functions of Polycomb group proteins during plant development. Semin Cell Dev Biol 14: 77–84 · DOI
  40. Ringrose L, Ehret H, Paro R (2004) Distinct contributions of histone H3 lysine 9 and 27 methylation to locus‐specific stability of polycomb complexes. Mol Cell 16: 641–653 · DOI
  41. Ringrose L, Paro R (1994b) Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins. Annu Rev Genet 38: 413–443 · DOI · Paper page
  42. Ringrose L, Rehmsmeier M, Dura JM, Paro R (2003) Genome‐wide prediction of Polycomb/Trithorax response elements in Drosophila melanogaster. Dev Cell 5: 759–771 · DOI · Paper page
  43. Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, Vingron M, Scholkopf B, Weigel D, Lohmann JU (2005) A gene expression map of Arabidopsis thaliana development. Nat Genet 37: 501–506 · DOI
  44. Schubert D, Clarenz O, Goodrich J (2005) Epigenetic control of plant development by Polycomb‐group proteins. Curr Opin Plant Biol 8: 553–561 · DOI
  45. Scott KC, Merrett SL, Willard HF (2006) A heterochromatin barrier partitions the fission yeast centromere into discrete chromatin domains. Curr Biol 16: 119–129 · DOI
  46. Sieburth LE, Meyerowitz EM (1997) Molecular dissection of the AGAMOUS control region shows that cis elements for spatial regulation are located intragenically. Plant Cell 9: 355–365
  47. Sung S, Amasino RM (2004) Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3. Nature 427: 159–164 · DOI
  48. Tolhuis B, Muijrers I, de Wit E, Teunissen H, Talhout W, van Steensel B, van Lohuizen M (2006) Genome‐wide profiling of PRC1 and PRC2 Polycomb chromatin binding in Drosophila melanogaster. Nat Genet 38: 694–699 · DOI · Paper page
  49. Tsukada Y, Fang J, Erdjument‐Bromage H, Warren ME, Borchers CH, Tempst P, Zhang Y (2006) Histone demethylation by a family of JmjC domain‐containing proteins. Nature 439: 811–816 · DOI
  50. Vanoosthuyse V, Valsdottir R, Javerzat JP, Hardwick KG (2004) Kinetochore targeting of fission yeast Mad and Bub proteins is essential for spindle checkpoint function but not for all chromosome segregation roles of Bub1p. Mol Cell Biol 24: 9786–9801 · DOI
  51. Wang L, Brown JL, Cao R, Zhang Y, Kassis JA, Jones RS (2004) Hierarchical recruitment of polycomb group silencing complexes. Mol Cell 14: 637–646 · DOI · Paper page
  52. Xiao B, Jing C, Wilson JR, Walker PA, Vasisht N, Kelly G, Howell S, Taylor IA, Blackburn GM, Gamblin SJ (2003) Structure and catalytic mechanism of the human histone methyltransferase SET7/9. Nature 421: 652–656 · DOI
  53. Zhan S, Horrocks J, Lukens LN (2006) Islands of co‐expressed neighbouring genes in Arabidopsis thaliana suggest higher‐order chromosome domains. Plant J 45: 347–357 · DOI
  54. Zimmermann P, Hirsch‐Hoffmann M, Hennig L, Gruissem W (2004) GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol 136: 2621–2632 · DOI

Cited by

Metadata

Authors
Schubert, D., Primavesi, L., Bishopp, A., Roberts, G., Doonan, J., Jenuwein, T., & Goodrich, J.
Venue
The EMBO Journal
Published
2006-09-07
Volume
25
Issue
19
Pages
4638-4649
ISSN
  • 0261-4189 (ISSN-L)
  • 1460-2075
OpenAlex
W2146440424
Cited by
429
References
3
FWCI
10.68
Type
journal article
Language
en
Open access
bronze
Licence

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