Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria
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We describe a deep-branching lineage of marine Actinobacteria with very low GC content (33%) and the smallest free living cells described yet (cell volume ca. 0.013 μm(3)), even smaller than the cosmopolitan marine photoheterotroph, 'Candidatus Pelagibacter ubique'. These microbes are highly related to 16S rRNA sequences retrieved by PCR from the Pacific and Atlantic oceans 20 years ago. Metagenomic fosmids allowed a virtual genome reconstruction that also indicated very small genomes below 1 Mb. A new kind of rhodopsin was detected indicating a photoheterotrophic lifestyle. They are estimated to be ~4% of the total numbers of cells found at the site studied (the Mediterranean deep chlorophyll maximum) and similar numbers were estimated in all tropical and temperate photic zone metagenomes available. Their geographic distribution mirrors that of picocyanobacteria and there appears to be an association between these microbial groups. A new sub-class, 'Candidatus Actinomarinidae' is proposed to designate these microbes.
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Candidatus Actinomarina, Synechococcus and SAR116 are ubiquitous in marine ecosystems and are known as or linked to primary producers.
“These bacterial groups are ubiquitous in marine ecosystems and are known as or linked to primary producers (Britschgi & Giovannoni, 1991; Partensky & Vaulot, 1999; Ghai et al., 2013) .”
From Potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp <i>Litopenaeus stylirostris</i> : possible influence of the rearing water and more (2021) · cites this paper as Ghai et al., 2013
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- Authors
- Ghai, R., Mizuno, C. M., Picazo, A., Camacho, A., & Rodriguez-Valera, F.
- Affiliations
- Universitat de Miguel Hernández d'Elx (ES)
- Universitat de València (ES)
- Venue
- Scientific Reports
- Published
- 2013-08-20
- Volume
- 3
- Issue
- 1
- Pages
- 2471-2471
- ISSN
- 2045-2322 (ISSN-L)
- PMC
- PMC3747508
- OpenAlex
- W2079075989
- Cited by
- 224
- References
- 72
- Citations by year
- 2026: 9 · 2025: 13 · 2024: 18 · 2023: 21 · 2022: 13 · 2021: 29 · 2020: 20 · 2019: 25 · 2018: 19 · 2017: 15 · 2016: 22 · 2015: 10 · 2014: 7 · 2013: 3
- FWCI
- 12.37
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Scientific Reports (publishedVersion, cc-by-nc-sa)
- Europe PMC (PubMed Central) (publishedVersion, cc-by-nc-sa)
- PubMed Central (publishedVersion, cc-by-nc-sa)
- PubMed (publishedVersion)
- Funders
- European Commission (311975)
- Generalitat Valenciana
- Topics
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protist diversity and phylogeny
- Keywords
- marine actinomycetes, photoheterotrophy, rhodopsin, picocyanobacteria, deep chlorophyll maximum
- MeSH terms
- Base Composition, Base Sequence, Molecular Sequence Data, Seawater, Genome, Bacterial, Actinobacteria, Metagenome, Metagenomics
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