Model-driven experimental analysis of the function of SHP-2 in IL-6-induced Jak/STAT signaling
Abstract
Misregulated interleukin-6 (IL-6)-induced Jak/STAT signaling contributes to many diseases. Under non-pathological conditions Jak/STAT signaling is tightly regulated by a complex network of regulators. One of these regulators is the protein tyrosine phosphatase SH2-containing phosphatase 2 (SHP2). Although SHP2 is known to be a negative regulator of IL-6-induced Jak/STAT signaling, its exact molecular function is not entirely understood. To elucidate the function of SHP2 in IL-6 signaling we followed a systems biology approach, in which modeling, stepwise model refinement, and experimental analysis are closely linked. We come up with an identifiable model of early Jak/STAT signaling that describes the data and proves to be predictive. The model-based analysis implies that (1) the stepwise association of IL-6 with gp80 and gp130 and (2) STAT3 dimerization at the receptor are essential for the dynamics of early pathway activation, and (3) phosphorylation of SHP2 is nonlinear. Furthermore, the modeling results indicate that SHP2 does not act as a feedback inhibitor in an early phase of IL-6-induced Jak/STAT signaling. However, experimental data reveal that SHP2 exhibits a basal repressory function.
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SHP2 is a repressor of basal cytokine-independent STAT3 phosphorylation.
“Additionally, SHP2 is a repressor of basal cytokine-independent STAT3 phosphorylation [12, 13].”
From The tyrosine phosphatase SHP2 increases robustness and information transfer within IL-6-induced JAK/STAT signalling (2021) · cites this paper as [12]
In cell populations, the mean amount of SHP2 correlates negatively with the strength of STAT3 activation.
“Interestingly, in cell populations the mean amount of SHP2 correlates negatively with the strength of STAT3 activation [12].”
From The tyrosine phosphatase SHP2 increases robustness and information transfer within IL-6-induced JAK/STAT signalling (2021) · cites this paper as [12]
Knock down of SHP2 increases basal STAT3 activation.
“Knock down of SHP2 increases basal STAT3 activation [12].”
From The tyrosine phosphatase SHP2 increases robustness and information transfer within IL-6-induced JAK/STAT signalling (2021) · cites this paper as [12]
Cites
Lütticken, C., Wegenka, U. M., Yuan, J., Buschmann, J., Schindler, C., Ziemiecki, A., Harpur, A. G., Wilks, A. F., Yasukawa, K., Taga, T., et al. (1994) · Science · doi:10.1126/science.8272872 · Cited by 814 · see citing works
Lu, W., Gong, D., Bar-Sagi, D., & Cole, P. A. (2001) · Molecular Cell · doi:10.1016/s1097-2765(01)00369-0 · Cited by 268 · see citing works
SCHAPER, F., GENDO, C., ECK, M., SCHMITZ, J., GRIMM, C., ANHUF, D., KERR, I. M., & HEINRICH, P. C. (1998) · Biochemical Journal · doi:10.1042/bj3350557 · Cited by 178 · see citing works
Self-citationKim, H., Hawley, T. S., Hawley, R. G., & Baumann, H. (1998) · Molecular and Cellular Biology · doi:10.1128/mcb.18.3.1525 · Cited by 119 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Interleukin-6: Biology, signaling and strategies of blockade
Schaper, F., & Rose‐John, S. (2015) · Cytokine & Growth Factor Reviews · doi:10.1016/j.cytogfr.2015.07.004 · Cited by 511 · see citing works
“stimulation of IL-6 signaling induces JAK-dependent phosphorylation of the C-terminal tail of SHP2 which follows similar kinetics as STAT3 tyrosine phosphorylation [87,103].”
BackgroundMethodSelf-citationThe role of cytokines in the regulation of NK cells in the tumor environment.
Konjević, G., Vuletić, A., Martinović, K. M., Larsen, A., & Jurišić, V. (2019) · Cytokine · doi:10.1016/j.cyto.2019.02.001 · Cited by 234 · see citing works
Reeh, H., Rudolph, N., Billing, U., Christen, H., Streif, S., Bullinger, E., Schliemann-Bullinger, M., Findeisen, R., Schaper, F., Huber, H. J., et al. (2019) · Cell Communication and Signaling · doi:10.1186/s12964-019-0356-0 · Cited by 180 · see citing works
Self-citationMultiomic analysis of cytokines in immuno-oncology
Jurišić, V. (2020) · Expert Review of Proteomics · doi:10.1080/14789450.2020.1845654 · Cited by 185 · see citing works
The Interleukin-1 (IL-1) Superfamily Cytokines and Their Single Nucleotide Polymorphisms (SNPs)
Behzadi, P., Aga, S. S., Nissar, S., Banday, M. Z., Gajdács, M., García‐Perdomo, H. A., Akhtar, K., Pinheiro, M., Magnusson, P., Sarshar, M., et al. (2022) · Journal of Immunology Research · doi:10.1155/2022/2054431 · Cited by 129 · see citing works
“…studies show, the cytokine receptors interact with the Janus Kinases (JAKs) family and signal transducer and activator of transcription (STAT), and therefore, the majority of cytokines recruit the JAK/ STAT signaling pathway to move their own signaling molecules (Figure 1) [7, 11, 150 – 152].”
Jak-Stat Signaling Induced by Interleukin-6 Family Cytokines in Hepatocellular Carcinoma
Lokau, J., Schoeder, V., Haybaeck, J., & Garbers, C. (2019) · Cancers · doi:10.3390/cancers11111704 · Cited by 124 · see citing works
“In contrast to SOCS3, SHP2 does not represent a feedback inhibition but is constitutively expressed and interacts with gp130 directly upon phosphorylation of the receptor, thus rather regulating intensity than length of STAT activity [47,73].”
BackgroundCalçada, D., Vianello, D., Giampieri, E., Sala, C., Castellani, G., de Graaf, A., Kremer, B., van Ommen, B., Feskens, E., Santoro, A., et al. (2014) · Mechanisms of Ageing and Development · doi:10.1016/j.mad.2014.01.004 · Cited by 97 · see citing works
“, 2010), and also in directing further model development, by providing criteria for model refinement (Dittrich et al., 2012) or”
The Salmonella Secreted Effector SarA/SteE Mimics Cytokine Receptor Signaling to Activate STAT3
Gibbs, K. D., Washington, E. J., Jaslow, S. L., Bourgeois, J. S., Foster, M., Guo, R., Brennan, R., & Ko, D. C. (2019) · Cell Host and Microbe · doi:10.2139/ssrn.3434723 · Cited by 61
“Notably, the SarA sequence does not contain a YxxV motif (Y759 in gp130), where the negative regulators SHP-2 (Dittrich et al., 2012) and SOCS3 (Nicholson Cell Host Microbe.”
BackgroundInfluentialRobustness and Information Transfer within IL-6-induced JAK/STAT Signalling
Billing, U., Jetka, T., Nortmann, L., Wundrack, N., Komorowski, M., Waldherr, S., Schaper, F., & Dittrich, A. (2019) · Communications Biology · doi:10.1038/s42003-018-0259-4 · Cited by 64 · see citing works
Self-citationFiebelkow, J., Guendel, A., Guendel, B., Mehwald, N., Jetka, T., Komorowski, M., Waldherr, S., Schaper, F., & Dittrich, A. (2021) · Cell Communication and Signaling · doi:10.1186/s12964-021-00770-7 · Cited by 53 · see citing works
“Interestingly, in cell populations the mean amount of SHP2 correlates negatively with the strength of STAT3 activation [12].”
BackgroundSelf-citationDrosophilaSOCS36E negatively regulates JAK/STAT pathway signaling via two separable mechanisms
Stec, W. J., Vidal, O. M., & Zeidler, M. P. (2013) · Molecular Biology of the Cell · doi:10.1091/mbc.e13-05-0275 · Cited by 48 · see citing works
“Of these, Protein Inhibitors of Activated STATs (PIAS), protein tyrosine phosphatases and Suppressors of Cytokine Signalling (SOCS) families represent the major classes of proteins involved in negative regulation and termination of JAK/STAT pathway signalling (Arbouzova and Zeidler, 2006; Stec and Zeidler, 2011; Tamiy…”
BackgroundJessica, P., Bongartz, H., Klepsch, O., Wundrack, N., Poli, V., Schaper, F., & Dittrich, A. (2016) · Cellular Signalling · doi:10.1016/j.cellsig.2016.04.004 · Cited by 46 · see citing works
“Whereas IL-6-induced STAT3 and MAPK activation peak within less than one hour [27, 28] IL-6-induced mTOR activation is delayed and reaches a maximum at 75 min (Fig 6C, compare panels 1 and 2 and quantification of data).”
BackgroundSelf-citationSystems biology of IL-6, IL-12 family cytokines
Dittrich, A., Hessenkemper, W., & Schaper, F. (2015) · Cytokine & Growth Factor Reviews · doi:10.1016/j.cytogfr.2015.07.002 · Cited by 41 · see citing works
Self-citationBlätke, M., Dittrich, A., Rohr, C., Heiner, M., Schaper, F., & Marwan, W. (2012) · Molecular Biosystems · doi:10.1039/c3mb25593j · Cited by 34 · see citing works
“See (Dittrich et al., 2012, submitted) for original data.”
BackgroundMethodSelf-citationActivating mutations of the gp130/JAK/STAT pathway in human diseases
Lokau, J., & Garbers, C. (2018) · Advances in protein chemistry and structural biology · doi:10.1016/bs.apcsb.2018.11.007 · Cited by 40 · see citing works
Gu, J., Han, T., Ma, R., Zhu, Y.-L., Jia, Y., Du, J.-J., Chen, Y., Jiang, X.-J., Xie, X.-D., & Guo, X. (2014) · International Journal of Oncology · doi:10.3892/ijo.2013.2191 · Cited by 31 · see citing works
“SHP2 overexpression also triggers the activation of several cytoplasmic kinase cascade pathways, such as the Ras-Raf-Erk (20), JAK/STAT (21) and PI3K/AKT pathways (22).”
BackgroundEndosomes as Signaling Platforms for IL-6 Family Cytokine Receptors
Schmidt‐Arras, D., & Rose‐John, S. (2021) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2021.688314 · Cited by 33 · see citing works
If small molecules immunotherapy comes, can the prime be far behind?
Zhang, J., Zhang, Y., Qu, B., Yang, H., Hu, S., & Dong, X. (2021) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2021.113356 · Cited by 40 · see citing works
Sobotta, S., Raue, A., Huang, X., Vanlier, J., Jünger, A., Bohl, S., Albrecht, U., Hahnel, M. J., Wolf, S., Mueller, N. S., et al. (2017) · Frontiers in Physiology · doi:10.3389/fphys.2017.00775 · Cited by 28 · see citing works
“Although several ODE-based mathematical models of IL6 signaling have been reported to date (Singh et al., 2006; Moya et al., 2011; Dittrich et al., 2012), only with a recently described mathematical model (Xu et al.”
MethodWu, D., Wen, X., Wang, Y., Han, X., Wang, S., Shen, M., Fan, S., Zhuang, J., Zhang, Z.-F., Shan, Q., et al. (2018) · Journal of Cellular Physiology · doi:10.1002/jcp.26843 · Cited by 28 · see citing works
“…IL5, IL7, IL9, IL1, IL17E, IL4R, and IL6, cell growth and differentiation were identified to be regulated by several members of the mammalian STAT family proteins, including Stat4, Stat6, Stat5a, and Stat5b (Dittrich et al., 2012; Kurgonaite et al., 2015; Luo et al., 2016; Takeda & Akira, 2000).”
BackgroundRetractedCOVID-19 co-infection mathematical model as guided through signaling structural framework
Soni, B., & Singh, S. (2021) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2021.03.028 · Cited by 13 · see citing works
Rinis, N., Küster, A., de Leur, H. S.-V., Mohr, A., & Müller-Newen, G. (2014) · Cell Communication and Signaling · doi:10.1186/1478-811x-12-14 · Cited by 14 · see citing works
“Gp130 is known to be expressed only at very low levels at the plasma membrane [9].”
BackgroundChemotherapy Effectiveness and Prognosis of Gastric Cancer Influenced by PTPN11 Polymorphisms
Zhuo, C., Shao, M., Chen, C., Lin, C., Jiang, D., Chen, G., Tian, H., Wang, L., Li, J., & Lin, X. (2016) · Cellular Physiology and Biochemistry · doi:10.1159/000447856 · Cited by 9 · see citing works
Interleukin-6 in non-infectious uveitis: Biology, experimental evidence and treatment strategies
Yu, X., Duan, R., Jiang, L., Wang, T., Li, Z., Zhang, B., Su, W., & Lin, Y. (2024) · Biochemical Pharmacology · doi:10.1016/j.bcp.2024.116605 · Cited by 10 · see citing works
Synthetic Perturbations in IL6 Biological Circuit Induces Dynamical Cellular Response
Soni, B., & Singh, S. (2021) · Molecules · doi:10.3390/molecules27010124 · Cited by 10 · see citing works
“The model was based on experimental data obtained from the literature [16] as well as our predictions, which further depicted the role of TLR2 and IL6 signaling pathways during the early stage of infection.”
MethodYordanov, P., & Stelling, J. (2019) · bioRxiv · doi:10.1098/rsif.2019.0828 · Cited by 6 · see citing works
“r001101 denotes the label associated to edge 001 - >101 *) 4 5 (* non - deminsionalisation of rate constants *) 6 r100000 = 1; 7 r000100 = 1; 8 9 (* 22 transition rates as free variables *) 10 r000001 = parVect [[1]]; 11 r000010 = parVect [[2]]; 12 r001000 = parVect [[3]]; 13 r001011 = parVect [[4]]; 14 r001101 = parV…”
Quantification of membrane-bound cytokine receptors by calibrated flow cytometry
Miri, N., Köhler, N., & Dittrich, A. (2023) · STAR Protocols · doi:10.1016/j.xpro.2023.102511 · Cited by 3 · see citing works
“We used both approaches successfully for quantification of cytokine receptors.(1,5) However, when using fluorophore-coupled Calibrator beads the number of fluorophores on antibody-stained cells does not equal to the number of receptors in some cases.”
MethodSelf-citationvon Haeseler, F., Rudolph, N., Findeisen, R., & Huber, H. J. (2018) · IFAC-PapersOnLine · doi:10.1016/j.ifacol.2018.09.298 · Cited by 4 · see citing works
“Computational analysis of inflammatory signalling has proven to be useful for studying underlying disease mechanisms (Dittrich et al., 2012; Veltman et al., 2017).”
BackgroundInfluentialKashtanjeva, L., Ruhland, C., Horstmeier, F. C., Thives-Kurenbach, F., Ettich, J., Padrini, G., Streuber, S., Scheller, J., Dittrich, A., & Floss, D. M. (2026) · Cell Communication and Signaling · doi:10.1186/s12964-025-02593-2 · Cited by 2 · see citing works
“Recently, it was shown that robustness of IL-6-induced STAT3 activation is achieved by different mechanisms including repression of basal STAT3 activation by SHP2 [14, 15] and feedback inhibition by SOCS3 [29].”
Self-citationQuantification of total and phosphorylated STAT3 by calibrated western blotting
Köhler, N., Miri, N., & Dittrich, A. (2023) · STAR Protocols · doi:10.1016/j.xpro.2023.102508 · Cited by 2 · see citing works
Self-citation
- Authors
- Dittrich, A., Quaiser, T., Khouri, C., Görtz, D., Mönnigmann, M., & Schaper, F.
- Affiliations
- RWTH Aachen University (DE)
- Ruhr University Bochum (DE)
- Corresponding author
- Mönnigmann, Martin
- Schaper, Fred
- Venue
- Molecular BioSystems
- Publisher
- Oxford University Press (OUP)
- Published
- 2012-06-19
- Volume
- 8
- Issue
- 8
- Pages
- 2119-2134
- ISSN
- 1742-2051 (ISSN-L)
- 1742-206X
- OpenAlex
- W1967804453
- Cited by
- 32
- References
- 0
- Citations by year
- 2026: 2 · 2024: 1 · 2023: 2 · 2022: 1 · 2021: 6 · 2020: 1 · 2019: 5 · 2018: 3 · 2017: 1 · 2016: 2 · 2015: 3 · 2014: 2 · 2013: 3
- FWCI
- 1.27
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Molecular BioSystems (publishedVersion)
- PubMed (publishedVersion)
- RWTH Publications (RWTH Aachen) (submittedVersion)
- Funders
- Deutsche Forschungsgemeinschaft
- Topics
- Health Sciences › Medicine › Oncology › Cytokine Signaling Pathways and Interactions
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Tyrosine Phosphatases
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gene Regulatory Network Analysis
- Keywords
- SHP2, IL-6 signaling, JAK/STAT signaling, STAT3 dimerization, gp130, gp80, protein tyrosine phosphatase, product inhibition, signaling pathway modeling
- MeSH terms
- Cell Line, Enzyme-Linked Immunosorbent Assay, Flow Cytometry, Humans, Phosphorylation, Blotting, Western, Signal Transduction, Interleukin-6, Receptors, Interleukin-6, STAT Transcription Factors, STAT3 Transcription Factor, Cytokine Receptor gp130, Janus Kinases, Protein Tyrosine Phosphatase, Non-Receptor Type 11
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