The DOI matches its Crossref record; 235 of the 235 references it cites were found in a registry or an index.
Biological detection by optical oxygen sensing
Open accessAbstract
Recent developments in the area of biological detection by optical sensing of molecular oxygen (O2) are reviewed, with particular emphasis on the quenched-phosphorescence O2 sensing technique. Following a brief introduction to the main principles, materials and formats of sensor technology, the main groups of applications targeted to biological detection using an O2 transducer are described. These groups include: enzymatic assays; analysis of respiration of mammalian and microbial cells, small organisms and plants; food and microbial safety; monitoring of oxygenation in cell cultures, 3D models of live tissue, bioreactors and fluidic chips; ex vivo and in vivo O2 measurements; trace O2 analysis. For these systems, which enable a range of new bioanalytical tasks with different samples and models in a minimally invasive, contact-less manner, with high sensitivity, flexibility and imaging capabilities in 2D and 3D, relevant practical examples are presented and their merits and limitations discussed. An outlook of future scientific and technological developments in the field is also provided.
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Items 201–235 of 235
Whitmire, A., Letelier, R. M., Villagrán, V., & Ulloa, O. (2009) · Optics Express · doi:10.1364/oe.17.021992 · Cited by 45
Kühl, M., Behrendt, L., Trampe, E., Qvortrup, K., Schreiber, U., Borisov, S. M., Klimant, I., & Larkum, A. W. D. (2012) · Frontiers in Microbiology · doi:10.3389/fmicb.2012.00402 · Cited by 45
In vivo oxygen imaging using green fluorescent protein
Takahashi, E., Takano, T., Nomura, Y., Okano, S., Nakajima, O., & Sato, M. (2006) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.00067.2006 · Cited by 44
A Comparison of the Maximal Growth Rates of Various Bacteria under Optimal Conditions
Mason, M. M. (1935) · Journal of Bacteriology · doi:10.1128/jb.29.2.103-110.1935 · Cited by 43
Stitt, D. T., Nagar, M. S., Haq, T. A., & Timmins, M. R. (2002) · BioTechniques · doi:10.2144/02323dd06 · Cited by 41
Hyperbaric oxygen induces apoptosis via a mitochondrial mechanism
Weber, S. U., Koch, A., Kankeleit, J., Schewe, J., Siekmann, U., Stuber, F. E., Hoeft, A., & Schröder, S. (2008) · APOPTOSIS · doi:10.1007/s10495-008-0280-z · Cited by 41
FRET excited ratiometric oxygen sensing in living tissue
Ingram, J., Zhang, C., Xu, J., & Schiff, S. J. (2013) · Journal of Neuroscience Methods · doi:10.1016/j.jneumeth.2013.01.002 · Cited by 41
Mitochondria-specific Oxygen Probe Based on Iridium Complexes Bearing Triphenylphosphonium Cation
Murase, T., Yoshihara, T., & Tobita, S. (2012) · Chemistry Letters · doi:10.1246/cl.2012.262 · Cited by 41
Wang, L., Acosta, M. A., Leach, J. B., & Carrier, R. L. (2013) · Lab on a Chip · doi:10.1039/c3lc41366g · Cited by 41
Artefactual effects of oxygen on cell culture models of cellular senescence and stem cell biology
Toussaint, O., Weemaels, G., Debacq‐Chainiaux, F., Scharffetter‐Kochanek, K., & Wlaschek, M. (2010) · Journal of Cellular Physiology · doi:10.1002/jcp.22416 · Cited by 39
Ambient Oxygen Promotes Tumorigenesis
Sung, H. J., Ma, W., Starost, M. F., Lago, C. U., Lim, P. K., Sack, M. N., Kang, J., Wang, P.-Y., & Hwang, P. M. (2011) · PLoS ONE · doi:10.1371/journal.pone.0019785 · Cited by 39
Ouattara, D. A., Prot, J. M., Bunescu, A., Dumas, M., Elena‐Herrmann, B., Leclerc, É., & Brochot, C. (2012) · Molecular BioSystems · doi:10.1039/c2mb25049g · Cited by 37
Chronic hypoxia leads to a glycolytic phenotype and suppressed HIF-2 signaling in PC12 cells
Zhdanov, A. V., Dmitriev, R. I., Golubeva, A. V., Gavrilova, S. A., & Papkovsky, D. B. (2013) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/j.bbagen.2013.02.016 · Cited by 36
Self-citationMamalis, A. A., & Cochran, D. L. (2011) · Archives of Oral Biology · doi:10.1016/j.archoralbio.2011.05.001 · Cited by 36
Zhdanov, A. V., Dmitriev, R. I., & Papkovsky, D. B. (2012) · Bioscience Reports · doi:10.1042/bsr20120085 · Cited by 35
Self-citationBactenecin 7 peptide fragment as a tool for intracellular delivery of a phosphorescent oxygen sensor
Dmitriev, R. I., Ropiak, H. M., Yashunsky, D. V., Ponomarev, G. V., Zhdanov, A. V., & Papkovsky, D. B. (2010) · FEBS Journal · doi:10.1111/j.1742-4658.2010.07872.x · Cited by 34
Self-citationComparative bioenergetic assessment of transformed cells using a cell energy budget platform
Zhdanov, A. V., Favre, C., O′Flaherty, L., Adam, J., O’Connor, R., Pollard, P. J., & Papkovsky, D. B. (2011) · Integrative Biology · doi:10.1039/c1ib00050k · Cited by 34
Self-citationCalibration and validation of an optical sensor for intracellular oxygen measurements
Sud, D., & Mycek, M. (2009) · Journal of Biomedical Optics · doi:10.1117/1.3116714 · Cited by 34
Kinetics of chlorobenzene biodegradation under reduced oxygen levels
Balcke, G. U., Wegener, S., Kiesel, B., Benndorf, D., Schlömann, M., & Vogt, C. (2007) · Biodegradation · doi:10.1007/s10532-007-9156-0 · Cited by 33
Toxicological assessment of chemicals usingCaenorhabditis elegansand optical oxygen respirometry
Schouest, K. R., Zítová, A., Spillane, C., & Papkovsky, D. B. (2008) · Environmental Toxicology and Chemistry · doi:10.1897/08-083.1 · Cited by 31
Self-citationZhdanov, A. V., Ward, M. W., Taylor, C. T., Souslova, E. A., Chudakov, D. M., Prehn, J. H. M., & Papkovsky, D. B. (2010) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2010.06.006 · Cited by 30
Self-citationThe O2cost of the tension-time integral in isolated single myocytes during fatigue
Hepple, R. T., Howlett, R. A., Kindig, C. A., Stary, C. M., & Hogan, M. C. (2010) · American Journal of Physiology-Regulatory, Integrative and Comparative Physiology · doi:10.1152/ajpregu.00715.2009 · Cited by 30
Modular microfluidic system as a model of cystic fibrosis airways
Skolimowski, M., Nielsen, M. W., Abeille, F., Skafte-Pedersen, P., Sabourin, D., Fercher, A., Papkovsky, D. B., Molin, S., Taboryski, R., Sternberg, C., et al. (2012) · Biomicrofluidics · doi:10.1063/1.4742911 · Cited by 27
Self-citationMeasurement of dissolved oxygen using optodes in a FerryBox system
Hydes, D. J., Hartman, M. C., Kaiser, J., et al. (2009) · Estuarine Coastal and Shelf Science · doi:10.1016/j.ecss.2009.04.014 · Cited by 27
Thomas, C. E., & Will, Y. (2012) · Expert Opinion on Drug Discovery · doi:10.1517/17460441.2012.651122 · Cited by 27
Fluorescent oxygen sensitive microbead incorporation for measuring oxygen tension in cell aggregates
Lambrechts, D., Roeffaers, M. B. J., Kerckhofs, G., Roberts, S. J., Hofkens, J., de Putte, T. V., Oosterwyck, H. V., & Schrooten, J. (2012) · Biomaterials · doi:10.1016/j.biomaterials.2012.10.019 · Cited by 24
Correlating hypoxia with insulin secretion using a fluorescent hypoxia detection system
Skiles, M. L., Fancy, R. M., Topiwala, P. S., Sahai, S., & Blanchette, J. O. (2011) · Journal of Biomedical Materials Research Part B Applied Biomaterials · doi:10.1002/jbm.b.31796 · Cited by 22
Engelhard, S., Kumke, M. U., & Löhmannsröben, H. (2005) · Analytical and Bioanalytical Chemistry · doi:10.1007/s00216-005-3364-4 · Cited by 18
Oxygen Transport to Tissue XXVII
Cicco, G., Bruley, D. F., Ferrari, M., & Harrison, D. K. (2006) · Advances in experimental medicine and biology · doi:10.1007/0-387-29540-2 · Cited by 17
Control of microvascular P o 2kinetics following onset of muscle contractions: role for AMPK
Kano, Y., Poole, D. C., Sudo, M., Hirachi, T., Miura, S., & Ezaki, O. (2011) · American Journal of Physiology-Regulatory, Integrative and Comparative Physiology · doi:10.1152/ajpregu.00294.2011 · Cited by 17
Takahashi, E. (2008) · American Journal of Physiology-Heart and Circulatory Physiology · doi:10.1152/ajpheart.00168.2008 · Cited by 15
Adrian Dragu, A., Taeger, C. D., Buchholz, R., Sommerfeld, B., Hübner, H., Birkholz, T., Kleinmann, J. A., Münch, F., Horch, R. E., & Präbst, K. (2012) · Archives of Orthopaedic and Trauma Surgery · doi:10.1007/s00402-011-1458-3 · Cited by 15
Hiesinger, W., Vinogradov, S. A., Atluri, P., Fitzpatrick, J. R., Frederick, J. R., Levit, R. D., McCormick, R. C., Muenzer, J. R., Yang, E., Marotta, N. A., et al. (2011) · Journal of Applied Physiology · doi:10.1152/japplphysiol.01138.2010 · Cited by 12
Koga, S., Wüst, R. C. I., Walsh, B. J., Kindig, C. A., Rossiter, H. B., & Hogan, M. C. (2012) · American Journal of Physiology-Regulatory, Integrative and Comparative Physiology · doi:10.1152/ajpregu.00337.2012 · Cited by 11
Long time monitoring of the respiratory activity of isolated mitochondria
Heller, A., Fischer, L. H., Wolfbeis, O. S., & Göpferich, A. M. (2012) · Experimental Cell Research · doi:10.1016/j.yexcr.2012.05.007 · Cited by 10
Cited by
Optical methods for sensing and imaging oxygen: materials, spectroscopies and applications
Wang, X.-D., & Wolfbeis, O. S. (2014) · Chem. Soc. Rev. · doi:10.1039/c4cs00039k · Cited by 1,114
Place, T. L., Domann, F. E., & Case, A. J. (2017) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2017.10.003 · Cited by 434
Recent advances in intelligent food packaging materials: Principles, preparation and applications
Cheng, H., Xu, H., Julian McClements, D., Chen, L., Jiao, A., Tian, Y., Miao, M., & Jin, Z. (2022) · Food Chemistry · doi:10.1016/j.foodchem.2021.131738 · Cited by 367
Frequently asked questions in hypoxia research
Wenger, R., Kurtcuoglu, V., Scholz, C., Marti, H., & Hoogewijs, D. (2015) · Hypoxia · doi:10.2147/hp.s92198 · Cited by 223
Metadata
- Authors
- Papkovsky, D. B., & Dmitriev, R. I.
- Venue
- Chemical Society Reviews
- Publisher
- Royal Society of Chemistry (RSC)
- Published
- 2013
- Volume
- 42
- Issue
- 22
- Pages
- 8700
- ISSN
- 0306-0012 (ISSN-L)
- 1460-4744
- OpenAlex
- W2161039998
- Cited by
- 444
- References
- 235
- FWCI
- 1.01
- Type
- journal article
- Language
- en
- Open access
- green
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