The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Electrostatic interactions influence diazabicyclooctane inhibitor potency against OXA-48-like β-lactamases
Open accessPublished version of a preprint
Abstract
The OXA-48 β-lactamase protects bacteria from carbapenem antibiotics; with activity affected by sequence variation. We show variation to affect susceptibility towards diazabicyclooctane (DBO) inhibitors, dependent upon the inhibitor C2 substituent.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Flagged first, then by citations
Research works printed but not linked: 59
- GBD 2021 Antimicrobial Resistance Collaborators, 2024, Lancet, 404, 1199, 10.1016/S0140-6736(24)01867-1 · DOI · Paper page
- Bush, 2016, Cold Spring Harbor Perspect. Med., 6, a025247, 10.1101/cshperspect.a025247 · DOI · Paper page
- Versporten, 2018, Lancet Global Health, 6, e619, 10.1016/S2214-109X(18)30186-4 · DOI
- Tooke, 2019, J. Mol. Biol., 431, 3472, 10.1016/j.jmb.2019.04.002 · DOI
- Ambler, 1980, Philos. Trans. R. Soc., B, 289, 321, 10.1098/rstb.1980.0049 · DOI
- Hirvonen, 2021, Antimicrob. Agents Chemother., 65, e00184-21, 10.1128/aac.00184-21 · DOI
- Antimicrobial Resistance Collaborators, 2022, Lancet, 399, 629, 10.1016/S0140-6736(21)02724-0 · DOI · Paper page
- Pitout, 2019, Clin. Microbiol. Rev., 33, e00102-19, 10.1128/CMR.00102-19 · DOI
- Nordmann, 2012, Trends Mol. Med., 18, 263, 10.1016/j.molmed.2012.03.003 · DOI
- Fröhlich, 2019, mSphere, 4, e00024-19, 10.1128/msphere.00024-19 · DOI
- Thakkur, 2022, ACS Catal., 12, 10338, 10.1021/acscatal.2c02693 · DOI
- Ehmann, 2012, Proc. Natl. Acad. Sci. U. S. A., 109, 11663, 10.1073/pnas.1205073109 · DOI
- King, 2015, ACS Infect. Dis., 1, 175, 10.1021/acsinfecdis.5b00007 · DOI
- Stewart, 2018, Antimicrob. Agents Chemother., 62, e01195-18, 10.1128/aac.01195-18 · DOI
- Zhou, 2023, ACS Cent. Sci., 9, 2339, 10.1021/acscentsci.3c00609 · DOI
- Lahiri, 2015, ACS Chem. Biol., 10, 591, 10.1021/cb500703p · DOI
- Papp-Wallace, 2018, J. Med. Chem., 61, 4067, 10.1021/acs.jmedchem.8b00091 · DOI
- Davies, 2020, J. Med. Chem., 63, 15802, 10.1021/acs.jmedchem.0c01535 · DOI
- Blizzard, 2014, Bioorg. Med. Chem. Lett., 24, 780, 10.1016/j.bmcl.2013.12.101 · DOI
- Morinaka, 2015, J. Antimicrob. Chemother., 70, 2779, 10.1093/jac/dkv166 · DOI
- Poirel, 2011, Antimicrob. Agents Chemother., 55, 2546, 10.1128/aac.00022-11 · DOI
- Oueslati, 2019, Microorganisms, 8, 24, 10.3390/microorganisms8010024 · DOI
- Dortet, 2015, Antimicrob. Agents Chemother., 59, 3823, 10.1128/aac.05058-14 · DOI
- Lund, 2018, FEBS J., 285, 4214, 10.1111/febs.14643 · DOI
- Stewart, 2021, ACS Infect. Dis., 7, 1765, 10.1021/acsinfecdis.1c00094 · DOI
- Smith, 2019, Antimicrob. Agents Chemother., 63, e01202-19, 10.1128/AAC.01202-19 · DOI
- Li, 2005, Proteins: Struct., Funct., Bioinf., 61, 704, 10.1002/prot.20660 · DOI
- D.Anstine , R.Zubatyuk and O.Isayev , AIMNet2: A Neural Network Potential to Meet Your Neutral, Charged, Organic, and Elemental-Organic Needs, ChemRxiv , October 12, 2023 , preprint, 10.26434/chemrxiv-2023-296ch · DOI
- Pan, 2021, J. Chem. Inf. Model., 61, 3159, 10.1021/acs.jcim.1c00075 · DOI
- Ehmann, 2013, J. Biol. Chem., 288, 27960, 10.1074/jbc.M113.485979 · DOI
- Nukaga, 2018, Antimicrob. Agents Chemother., 62, e02371-17, 10.1128/aac.02371-17 · DOI
- Tooke, 2019, Antimicrob. Agents Chemother., 63, e00564-19, 10.1128/AAC.00564-19 · DOI
- Alsenani, 2023, Antimicrob. Agents Chemother., 67, e00350-23, 10.1128/aac.00350-23 · DOI
- King, 2016, ACS Chem. Biol., 11, 864, 10.1021/acschembio.5b00944 · DOI
- Moya, 2017, Antimicrob. Agents Chemother., 61, e02529-16, 10.1128/aac.02529-16 · DOI
- Onufriev, 2013, Q. Rev. Biophys., 46, 181, 10.1017/S0033583513000024 · DOI
- Oueslati, 2020, Antimicrob. Agents Chemother., 64, e02329-19, 10.1128/AAC.02329-19 · DOI
- Tooke, 2023, J. Am. Chem. Soc., 145, 7166, 10.1021/jacs.2c12123 · DOI
- Jabeen, 2024, ACS Catal., 14, 7166, 10.1021/acscatal.3c05302 · DOI
- Hirvonen, 2020, ACS Catal., 10, 6188, 10.1021/acscatal.0c00596 · DOI
- Outeda-García, 2025, Antimicrob. Agents Chemother., 69, e01614-24, 10.1128/aac.01614-24 · DOI
- Che, 2012, J. Am. Chem. Soc., 134, 11206, 10.1021/ja303168n · DOI
- Golemi, 2001, Proc. Natl. Acad. Sci. U. S. A., 98, 14280, 10.1073/pnas.241442898 · DOI
- Li, 2005, Proteins, 61, 246, 10.1002/prot.20596 · DOI
- Berrow, 2007, Nucleic Acids Res., 35, e45, 10.1093/nar/gkm047 · DOI
- Cahill, 2017, Antimicrob. Agents Chemother., 61, e02260-16, 10.1128/aac.02260-16 · DOI
- Cordingley, 1989, J. Virol., 63, 5037, 10.1128/jvi.63.12.5037-5045.1989 · DOI
- Laemmli, 1970, Nature, 227, 680, 10.1038/227680a0 · DOI · Paper page
- E.Gasteiger , C.Hoogland , A.Gattiker , S.Duvaud , M. R.Wilkins , R. D.Appel and A.Bairoch , Protein Identification and Analysis Tools on the Expasy Server, in The Proteomics Protocols Handbook , Humana Press , 2005 , pp. 571–607 · DOI
- Winter, 2010, J. Appl. Crystallogr., 43, 186, 10.1107/S0021889809045701 · DOI
- Evans, 2013, Acta Crystallogr., Sect. D: Biol. Crystallogr., 69, 1204, 10.1107/S0907444913000061 · DOI
- McCoy, 2007, J. Appl. Crystallogr., 40, 658, 10.1107/S0021889807021206 · DOI · Paper page
- Adams, 2010, Acta Crystallogr., Sect. D: Biol. Crystallogr., 66, 213, 10.1107/S0907444909052925 · DOI · Paper page
- Emsley, 2010, Acta Crystallogr., Sect. D: Biol. Crystallogr., 66, 486, 10.1107/S0907444910007493 · DOI · Paper page
- Pettersen, 2004, J. Comput. Chem., 25, 1605, 10.1002/jcc.20084 · DOI
- O'Callaghan, 1972, Antimicrob. Agents Chemother., 1, 283, 10.1128/aac.1.4.283 · DOI
- Vanquelef, 2011, Nucleic Acids Res., 39, W511, 10.1093/nar/gkr288 · DOI
- Jorgensen, 1983, J. Chem. Phys., 79, 926, 10.1063/1.445869 · DOI
- Roe, 2013, J. Chem. Theory Comput., 9, 3084, 10.1021/ct400341p · DOI
Metadata
- Authors
- Hoff, J. F., Goudar, K. E., Calvopiña, K., Beer, M., Hinchliffe, P., Shaw, J. M., Tooke, C. L., Takebayashi, Y., Cadzow, A. F., Harmer, N. J., Mulholland, A. J., Schofield, C. J., & Spencer, J.
- Affiliations
- University of Bristol (GB)
- University of Oxford (GB)
- University of Exeter (GB)
- Corresponding author
- Spencer, James
- ORCID
- Venue
- RSC Medicinal Chemistry
- Publisher
- Royal Society of Chemistry (RSC)
- Published
- 2025
- Volume
- 16
- Issue
- 11
- Pages
- 5441-5455
- ISSN
- 2632-8682 (ISSN-L)
- PMC
- PMC12415477
- OpenAlex
- W4413253057
- Cited by
- 3
- References
- 1
- Citations by year
- 2026: 3
- FWCI
- 0.84
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Locations
- RSC Medicinal Chemistry (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- PubMed Central (publishedVersion, cc-by)
- Explore Bristol Research (publishedVersion, cc-by)
- Bristol Research (University of Bristol) (publishedVersion, cc-by)
- Bristol Research (University of Bristol) (submittedVersion, cc-by-nc-nd)
- Funders
- Medical Research Council (MR/T016035/1, MR/W006308/1)
- Biotechnology and Biological Sciences Research Council (BB/T008741/1, BB/W001187/1)
- H2020 European Research Council (PREDACTED Advanced Grant Agreement no. 101021207)
- Topics
- Health Sciences › Medicine › Microbiology (medical) › Antibiotic Resistance in Bacteria
- Physical Sciences › Chemistry › Organic Chemistry › Synthesis of β-Lactam Compounds
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Enzyme function and inhibition
- Keywords
- avibactam, OXA-48, metallo-beta-lactamase, electrostatic interactions, inhibitor potency, desulfation, carbapenem resistance, molecular dynamics simulation, crystal structure
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review