Cited by 3Antibiotic Resistance in BacteriaSynthesis of β-Lactam CompoundsEnzyme function and inhibition

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Electrostatic interactions influence diazabicyclooctane inhibitor potency against OXA-48-like β-lactamases

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Abstract

The OXA-48 β-lactamase protects bacteria from carbapenem antibiotics; with activity affected by sequence variation. We show variation to affect susceptibility towards diazabicyclooctane (DBO) inhibitors, dependent upon the inhibitor C2 substituent.

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Research works printed but not linked: 59

  1. GBD 2021 Antimicrobial Resistance Collaborators, 2024, Lancet, 404, 1199, 10.1016/S0140-6736(24)01867-1 · DOI · Paper page
  2. Bush, 2016, Cold Spring Harbor Perspect. Med., 6, a025247, 10.1101/cshperspect.a025247 · DOI · Paper page
  3. Versporten, 2018, Lancet Global Health, 6, e619, 10.1016/S2214-109X(18)30186-4 · DOI
  4. Tooke, 2019, J. Mol. Biol., 431, 3472, 10.1016/j.jmb.2019.04.002 · DOI
  5. Ambler, 1980, Philos. Trans. R. Soc., B, 289, 321, 10.1098/rstb.1980.0049 · DOI
  6. Hirvonen, 2021, Antimicrob. Agents Chemother., 65, e00184-21, 10.1128/aac.00184-21 · DOI
  7. Antimicrobial Resistance Collaborators, 2022, Lancet, 399, 629, 10.1016/S0140-6736(21)02724-0 · DOI · Paper page
  8. Pitout, 2019, Clin. Microbiol. Rev., 33, e00102-19, 10.1128/CMR.00102-19 · DOI
  9. Nordmann, 2012, Trends Mol. Med., 18, 263, 10.1016/j.molmed.2012.03.003 · DOI
  10. Fröhlich, 2019, mSphere, 4, e00024-19, 10.1128/msphere.00024-19 · DOI
  11. Thakkur, 2022, ACS Catal., 12, 10338, 10.1021/acscatal.2c02693 · DOI
  12. Ehmann, 2012, Proc. Natl. Acad. Sci. U. S. A., 109, 11663, 10.1073/pnas.1205073109 · DOI
  13. King, 2015, ACS Infect. Dis., 1, 175, 10.1021/acsinfecdis.5b00007 · DOI
  14. Stewart, 2018, Antimicrob. Agents Chemother., 62, e01195-18, 10.1128/aac.01195-18 · DOI
  15. Zhou, 2023, ACS Cent. Sci., 9, 2339, 10.1021/acscentsci.3c00609 · DOI
  16. Lahiri, 2015, ACS Chem. Biol., 10, 591, 10.1021/cb500703p · DOI
  17. Papp-Wallace, 2018, J. Med. Chem., 61, 4067, 10.1021/acs.jmedchem.8b00091 · DOI
  18. Davies, 2020, J. Med. Chem., 63, 15802, 10.1021/acs.jmedchem.0c01535 · DOI
  19. Blizzard, 2014, Bioorg. Med. Chem. Lett., 24, 780, 10.1016/j.bmcl.2013.12.101 · DOI
  20. Morinaka, 2015, J. Antimicrob. Chemother., 70, 2779, 10.1093/jac/dkv166 · DOI
  21. Poirel, 2011, Antimicrob. Agents Chemother., 55, 2546, 10.1128/aac.00022-11 · DOI
  22. Oueslati, 2019, Microorganisms, 8, 24, 10.3390/microorganisms8010024 · DOI
  23. Dortet, 2015, Antimicrob. Agents Chemother., 59, 3823, 10.1128/aac.05058-14 · DOI
  24. Lund, 2018, FEBS J., 285, 4214, 10.1111/febs.14643 · DOI
  25. Stewart, 2021, ACS Infect. Dis., 7, 1765, 10.1021/acsinfecdis.1c00094 · DOI
  26. Smith, 2019, Antimicrob. Agents Chemother., 63, e01202-19, 10.1128/AAC.01202-19 · DOI
  27. Li, 2005, Proteins: Struct., Funct., Bioinf., 61, 704, 10.1002/prot.20660 · DOI
  28. D.Anstine , R.Zubatyuk and O.Isayev , AIMNet2: A Neural Network Potential to Meet Your Neutral, Charged, Organic, and Elemental-Organic Needs, ChemRxiv , October 12, 2023 , preprint, 10.26434/chemrxiv-2023-296ch · DOI
  29. Pan, 2021, J. Chem. Inf. Model., 61, 3159, 10.1021/acs.jcim.1c00075 · DOI
  30. Ehmann, 2013, J. Biol. Chem., 288, 27960, 10.1074/jbc.M113.485979 · DOI
  31. Nukaga, 2018, Antimicrob. Agents Chemother., 62, e02371-17, 10.1128/aac.02371-17 · DOI
  32. Tooke, 2019, Antimicrob. Agents Chemother., 63, e00564-19, 10.1128/AAC.00564-19 · DOI
  33. Alsenani, 2023, Antimicrob. Agents Chemother., 67, e00350-23, 10.1128/aac.00350-23 · DOI
  34. King, 2016, ACS Chem. Biol., 11, 864, 10.1021/acschembio.5b00944 · DOI
  35. Moya, 2017, Antimicrob. Agents Chemother., 61, e02529-16, 10.1128/aac.02529-16 · DOI
  36. Onufriev, 2013, Q. Rev. Biophys., 46, 181, 10.1017/S0033583513000024 · DOI
  37. Oueslati, 2020, Antimicrob. Agents Chemother., 64, e02329-19, 10.1128/AAC.02329-19 · DOI
  38. Tooke, 2023, J. Am. Chem. Soc., 145, 7166, 10.1021/jacs.2c12123 · DOI
  39. Jabeen, 2024, ACS Catal., 14, 7166, 10.1021/acscatal.3c05302 · DOI
  40. Hirvonen, 2020, ACS Catal., 10, 6188, 10.1021/acscatal.0c00596 · DOI
  41. Outeda-García, 2025, Antimicrob. Agents Chemother., 69, e01614-24, 10.1128/aac.01614-24 · DOI
  42. Che, 2012, J. Am. Chem. Soc., 134, 11206, 10.1021/ja303168n · DOI
  43. Golemi, 2001, Proc. Natl. Acad. Sci. U. S. A., 98, 14280, 10.1073/pnas.241442898 · DOI
  44. Li, 2005, Proteins, 61, 246, 10.1002/prot.20596 · DOI
  45. Berrow, 2007, Nucleic Acids Res., 35, e45, 10.1093/nar/gkm047 · DOI
  46. Cahill, 2017, Antimicrob. Agents Chemother., 61, e02260-16, 10.1128/aac.02260-16 · DOI
  47. Cordingley, 1989, J. Virol., 63, 5037, 10.1128/jvi.63.12.5037-5045.1989 · DOI
  48. Laemmli, 1970, Nature, 227, 680, 10.1038/227680a0 · DOI · Paper page
  49. E.Gasteiger , C.Hoogland , A.Gattiker , S.Duvaud , M. R.Wilkins , R. D.Appel and A.Bairoch , Protein Identification and Analysis Tools on the Expasy Server, in The Proteomics Protocols Handbook , Humana Press , 2005 , pp. 571–607 · DOI
  50. Winter, 2010, J. Appl. Crystallogr., 43, 186, 10.1107/S0021889809045701 · DOI
  51. Evans, 2013, Acta Crystallogr., Sect. D: Biol. Crystallogr., 69, 1204, 10.1107/S0907444913000061 · DOI
  52. McCoy, 2007, J. Appl. Crystallogr., 40, 658, 10.1107/S0021889807021206 · DOI · Paper page
  53. Adams, 2010, Acta Crystallogr., Sect. D: Biol. Crystallogr., 66, 213, 10.1107/S0907444909052925 · DOI · Paper page
  54. Emsley, 2010, Acta Crystallogr., Sect. D: Biol. Crystallogr., 66, 486, 10.1107/S0907444910007493 · DOI · Paper page
  55. Pettersen, 2004, J. Comput. Chem., 25, 1605, 10.1002/jcc.20084 · DOI
  56. O'Callaghan, 1972, Antimicrob. Agents Chemother., 1, 283, 10.1128/aac.1.4.283 · DOI
  57. Vanquelef, 2011, Nucleic Acids Res., 39, W511, 10.1093/nar/gkr288 · DOI
  58. Jorgensen, 1983, J. Chem. Phys., 79, 926, 10.1063/1.445869 · DOI
  59. Roe, 2013, J. Chem. Theory Comput., 9, 3084, 10.1021/ct400341p · DOI

Metadata

Authors
Hoff, J. F., Goudar, K. E., Calvopiña, K., Beer, M., Hinchliffe, P., Shaw, J. M., Tooke, C. L., Takebayashi, Y., Cadzow, A. F., Harmer, N. J., Mulholland, A. J., Schofield, C. J., & Spencer, J.
Affiliations
  • University of Bristol (GB)
  • University of Oxford (GB)
  • University of Exeter (GB)
Corresponding author
Spencer, James
Venue
RSC Medicinal Chemistry
Published
2025
Volume
16
Issue
11
Pages
5441-5455
ISSN
2632-8682 (ISSN-L)
OpenAlex
W4413253057
Cited by
3
References
1
Citations by year
2026: 3
FWCI
0.84
Type
journal article
Language
en
Open access
Locations
  • RSC Medicinal Chemistry (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • PubMed Central (publishedVersion, cc-by)
  • Explore Bristol Research (publishedVersion, cc-by)
  • Bristol Research (University of Bristol) (publishedVersion, cc-by)
  • Bristol Research (University of Bristol) (submittedVersion, cc-by-nc-nd)
Funders
  • Medical Research Council (MR/T016035/1, MR/W006308/1)
  • Biotechnology and Biological Sciences Research Council (BB/T008741/1, BB/W001187/1)
  • H2020 European Research Council (PREDACTED Advanced Grant Agreement no. 101021207)
Topics
  • Health Sciences › Medicine › Microbiology (medical) › Antibiotic Resistance in Bacteria
  • Physical Sciences › Chemistry › Organic Chemistry › Synthesis of β-Lactam Compounds
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Enzyme function and inhibition
Keywords
avibactam, OXA-48, metallo-beta-lactamase, electrostatic interactions, inhibitor potency, desulfation, carbapenem resistance, molecular dynamics simulation, crystal structure

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