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Specific binding of the Listeria monocytogenes transcriptional regulator PrfA to target sequences requires additional factor(s) and is influenced by iron
Abstract
The PrfA protein, which is a member of the Crp/Fnr family of prokaryotic transcription activators, regulates the virulence genes of Listeria monocytogenes. In this work, specific binding of PrfA to its target DNA was determined by electrophoretic mobility‐shift assays (EMSAs) using cell‐free extracts from the two L. monocytogenes strains EGD and NCTC 7973. PrfA‐specific binding differs between the two strains, even when the concentration of PrfA was adjusted to similar levels. Both strains exhibited increased PrfA‐specific binding after a shift into minimal essential medium (MEM) without showing a significant change in the amount of PrfA protein, relative to extracts from bacteria grown in brain–heart infusion (BHI). The purified PrfA protein from strain EGD produced in Escherichia coli did not exhibit specific binding to the target DNA but did so upon addition of PrfA‐free extracts from various Listeria species and Bacillus subtilis. The observed activation of PrfA seems to be caused by a PrfA‐activating factor (Paf), which is probably a protein since elevated temperature, but not RNase treatment, destroyed the activation potential of such PrfA‐free extracts. Moreover, fractionation of these extracts by sucrose gradient centrifugation yielded the Paf activity in a fraction sedimenting at 3.2 S. Specific binding of PrfA‐containing extracts from strain EGD to the hly and actA promoter sequences was strongly inhibited by iron, whereas that of extracts from strain NCTC 7973 was only slightly reduced. The iron effect seems to be mediated by Paf rather than by PrfA itself.
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“Fourteen Fur-regulated genes have been identified in L. monocytogenes, including genes that encode Fe2+ transporters and ferrichrome ABC transporters and proteins involved in Fe storage [56, 57].”
From Strategies of intracellular pathogens for obtaining iron from the environment (2015) · cites this paper as [56]
In the citing paper
“Increased Fe concentrations result in the upregulation of internalin proteins InlA and InlB, which are required for invasion [56].”
From Strategies of intracellular pathogens for obtaining iron from the environment (2015) · cites this paper as [56]
In the citing paper
“It has been shown that expression of Fur is negatively regulated by PerR, a Fur homologue that is involved in the oxidative stress response.”
From Strategies of intracellular pathogens for obtaining iron from the environment (2015) · cites this paper as [56]
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Listeria Pathogenesis and Molecular Virulence Determinants
Vázquez‐Boland, J. A., Kuhn, M., Berche, P., Chakraborty, T., Domínguez‐Bernal, G., Goebel, W., González‐Zorn, B., Wehland, J., & Kreft, J. (2001) · Clinical Microbiology Reviews · doi:10.1128/cmr.14.3.584-640.2001 · Cited by 2,147
Self-citationSchaible, U. E., & Kaufmann, S. H. E. (2004) · Nature Reviews Microbiology · doi:10.1038/nrmicro1046 · Cited by 945
“Important virulence factors that are expressed by this pathogen to facilitate bacterial intracellular invasion and spreading (including ActA, LLO and the regulator PrfA) are positively controlled by iron limitatio”
An RNA Thermosensor Controls Expression of Virulence Genes in Listeria monocytogenes
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“…des Interactions Bacteries-Cellules tional activators, and activation by PrfA requires binding of PrfA to a 14 bp palindromic sequence present at PrfAInstitut Pasteur 28, rue du Docteur Roux regulated promoters, the PrfA-box (Freitag et al., 1993; Böckmann et al., 1996; Sheehan et al., 1996).”
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Self-citationIn Vivo Genetic Analysis of Bacterial Virulence
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Self-citationGray, M. J., Freitag, N. E., & Boor, K. J. (2006) · Infection and Immunity · doi:10.1128/iai.74.5.2505-2512.2006 · Cited by 193
“Low iron and low carbohydrate concentrations activate transcription from some PrfAdependent virulence gene promoters (8, 16, 17, 32, 77).”
BackgroundExpression of Listeriolysin O and ActA by Intracellular and ExtracellularListeria monocytogenes
Moors, M. A., Levitt, B. S., Youngman, P. J., & Portnoy, D. A. (1999) · Infection and Immunity · doi:10.1128/iai.67.1.131-139.1999 · Cited by 170
Microinjection and growth of bacteria in the cytosol of mammalian host cells
Goetz, M., Bubert, A., Wang, G., Chico‐Calero, I., Vázquez-Boland, J. A., Beck, M. H., Slaghuis, J., Szalay, A. A., & Goebel, W. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.211106398 · Cited by 139
Self-citationRegulation of virulence genes in Listeria
Kreft, J., & Vázquez-Boland, J. A. (2001) · International Journal of Medical Microbiology · doi:10.1078/1438-4221-00111 · Cited by 140
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“Total RNA was prepared from wild-type LO28, grown in LB medium with (1) or without (2) cellobiose, and harvested during exponential (e) and stationary (s) phases as described previously by Sheehan et al.”
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Self-citationMertins, S., Joseph, B., Goetz, M., Ecke, R., Seidel, G., Sprehe, M., Hillen, W., Goebel, W., & Müller‐Altrock, S. (2006) · Journal of Bacteriology · doi:10.1128/jb.00972-06 · Cited by 105
Self-citationOlsen, K. N., Larsen, M., Gahan, C. G. M., et al. (2005) · Microbiology · doi:10.1099/mic.0.27552-0 · Cited by 102
Intracellular Induction of Listeria monocytogenes actA Expression
Shetron‐Rama, L. M., Marquis, H., Bouwer, H. G. A., & Freitag, N. E. (2002) · Infection and Immunity · doi:10.1128/iai.70.3.1087-1096.2002 · Cited by 101
“The existence of a PrfA-activating factor has been reported (3, 15), but thus far, other than RNA polymerase (2), no other cofactors that participate in L.”
BackgroundRoche, S., Gracieux, P., Milohanic, E., et al. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.10.6039-6048.2005 · Cited by 99
“h EGD strain with the prfA gene deleted, as described by Bockmann et al. ( 4 ).”
MethodEiting, M., Hagelüken, G., Schubert, W., & Heinz, D. W. (2005) · Molecular Microbiology · doi:10.1111/j.1365-2958.2005.04561.x · Cited by 102
“…described experiment bear an N-terminal His6-tag, a modification that, despite being spatially remote from the DNA-binding motif, has been interpreted to modify DNAbinding affinity (Böckmann et al., 1996; Dickneite et al., 1998), as opposed to Flag epitope-tagged PrfAwt (Vega et al., 1998; 2004).”
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Self-citationEisenreich, W., Slaghuis, J., Laupitz, R., et al. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0507580103 · Cited by 96
Self-citationLobel, L., Sigal, N., Borovok, I., Belitsky, B. R., Sonenshein, A. L., & Herskovits, A. A. (2014) · Molecular Microbiology · doi:10.1111/mmi.12890 · Cited by 95
“Iron availability also seems to play a role in prfA regulation, though the mechanism is not clear (Böckmann et al., 1996; Conte et al., 1996).”
BackgroundRauch, M., Luo, Q., Müller‐Altrock, S., & Goebel, W. (2005) · Journal of Bacteriology · doi:10.1128/jb.187.2.800-804.2005 · Cited by 87
“was performed as described previously (2, 3).”
Self-citationBehari, J., & Youngman, P. J. (1998) · Infection and Immunity · doi:10.1128/iai.66.8.3635-3642.1998 · Cited by 87
“We were able to confirm the nucleotide changes in codons 145 (GGT to AGT) and 229 (TGT to TAT) in prfANCTC 7973 that lead to Gly145Ser and Cys229Tyr substitutions in the PrfA protein as reported recently by Ripio et al. (38).”
BackgroundGaballa, A., Guariglia-Oropeza, V., Wiedmann, M., & Boor, K. J. (2019) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00034-19 · Cited by 87
Vega, Y., Dickneite, C., Ripio, M. T., Böckmann, R., González‐Zorn, B., Novella, S., Domínguez‐Bernal, G., Goebel, W., & Vázquez‐Boland, J. A. (1998) · Journal of Bacteriology · doi:10.1128/jb.180.24.6655-6660.1998 · Cited by 82
Self-citationReis, O., Sousa, S., Camejo, A., Villiers, V., Gouin, E., Cossart, P., & Cabanes, D. (2010) · The Journal of Infectious Diseases · doi:10.1086/654880 · Cited by 78
“monocytogenes strains EGDe (ATCC BAA-679) and EGDeDprfA [25] and L.”
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“The RNA polymerase (RNAP) present in a listerial extract leads to the formation of two additional, slowmigrating complexes: CI, consisting of PrfA, RNAP and target DNA; and CII, which migrates slightly faster than CI and consists of RNAP and DNA (Böckmann et al., 1996; 2000) (Fig.”
BackgroundMethodSelf-citationKastbjerg, V. G., Larsen, M., Gram, L., & Ingmer, H. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.00925-09 · Cited by 75
“prfA, plcA, hly, and actA (3, 45), and high osmolarity induced”
BackgroundRenzoni, A., Cossart, P., & Dramsi, S. (1999) · Molecular Microbiology · doi:10.1046/j.1365-2958.1999.01621.x · Cited by 73
“PrfA-mediated activation requires binding of PrfA at a conserved 14 bp palindromic sequence (PrfA box) in PrfA target promoter regions (Freitag et al., 1993; Bockmann et al., 1996; Sheehan et al., 1996).”
BackgroundBehari, J., & Youngman, P. J. (1998) · Journal of Bacteriology · doi:10.1128/jb.180.23.6316-6324.1998 · Cited by 72
“Paf activity is present not only in pathogenic Listeria species, but also in the nonpathogenic soil organism Bacillus subtilis (4).”
BackgroundWong, K. K. Y., & Freitag, N. E. (2004) · Journal of Bacteriology · doi:10.1128/jb.186.18.6265-6276.2004 · Cited by 70
“PrfA is a 27-kDa site-specific DNA-binding protein that recognizes a 14-bp palindrome (PrfA box) within the 40 region of PrfA-dependent promoters (1, 8, 13, 40).”
BackgroundHerbert, K., & Foster, S. J. (2001) · Microbiology · doi:10.1099/00221287-147-8-2275 · Cited by 68
McGann, P., Wiedmann, M., & Boor, K. J. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.02664-06 · Cited by 65
Modulation of PrfA activity in Listeria monocytogenes upon growth in different culture media
Stoll, R., Mertins, S., Joseph, B., Müller‐Altrock, S., & Goebel, W. (2008) · Microbiology · doi:10.1099/mic.0.2008/018283-0 · Cited by 65
“Kaufmann (Max-PlanckInstitut für Infektionsbiologie, Berlin, Germany) and the prfA deletion mutant (EGD DprfA) was constructed by Böckmann et al. (1996). Construction of EGDDprfApPrfA and EGDDprfApPrfA* has been described by Marr et al.”
MethodSelf-citationRegulation of Listeria monocytogenes Virulence
Johansson, J., & Freitag, N. E. (2019) · Microbiology Spectrum · doi:10.1128/microbiolspec.gpp3-0064-2019 · Cited by 61
Listeria monocytogenes and the Genus Listeria
Khelef, N., Lecuit, M., Buchrieser, C., Cabanes, D., Dussurget, O., & Cossart, P. (2006) · Springer eBooks · doi:10.1007/0-387-30744-3_11 · Cited by 52
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“However, our previous results (Böckmann et al., 1996) and those reported here indicate that cell-free extracts of L. monocytogenes do not contain free PrfA and do not form the same simple PrfA complexes with suitable target DNA probes as observed with the purified PrfA (complex CIII).”
BackgroundMethodResultInfluentialSelf-citationStrategies of intracellular pathogens for obtaining iron from the environment
Leon-Sicairos, N., Reyes-Cortes, R., Guadrón-Llanos, A. M., Madueña-Molina, J., Leon-Sicairos, C., & Canizalez-Román, A. (2015) · BioMed Research International · doi:10.1155/2015/476534 · Cited by 51
Miner, M. D., Port, G. C., & Freitag, N. E. (2008) · Microbiology · doi:10.1099/mic.0.2008/021063-0 · Cited by 48
“The His- and Express-tags were found to have minimal effects on PrfA and PrfA* protein function in comparison to purified PrfA protein without the tags (M. D. Miner, unpublished data), as has been reported elsewhere (Böckmann et al., 1996, 2000).”
Comparative Proteomic Analysis of Listeria monocytogenes Strains F2365 and EGD
Donaldson, J. R., Nanduri, B., Burgess, S. C., et al. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.01847-08 · Cited by 44
“A majority of these identified helicases have important roles in bacterial DNA repair (RecG, RecQ, DinG, and DbpA) (1, 23, 28, 53).”
BackgroundMcLaughlin, H. P., Xiao, Q., Rea, R. B., Pi, H., Casey, P. G., Darby, T. M., Charbit, A., Sleator, R. D., Joyce, S. A., Cowart, R. E., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0030928 · Cited by 42
Greiffenberg, L., Sokolovic, Z., Schnittler, H., Spory, A., Böckmann, R., Goebel, W., & Kuhn, M. (2006) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.1997.tb12768.x · Cited by 41
Self-citationWilliams, J. R., Thayyullathil, C., & Freitag, N. E. (2000) · Journal of Bacteriology · doi:10.1128/jb.182.3.837-841.2000 · Cited by 41
“It recognizes and binds to a 14-bp DNA palindromic sequence that is present in the 240 region of target gene promoters (1, 6, 9, 31).”
BackgroundPalmer, M. E., Chaturongakul, S., Wiedmann, M., & Boor, K. J. (2011) · mBio · doi:10.1128/mbio.00241-11 · Cited by 38
Signals behind Listeria monocytogenes virulence mechanisms
Meireles, D., Pombinho, R., & Cabanes, D. (2024) · Gut Microbes · doi:10.1080/19490976.2024.2369564 · Cited by 41
“83,84 Contrary, when bacteria are under iron starvation conditions, the expression of both LLO and ActA is increased for Lm to escape from the vacuole, reach the host cytosol, and spread to neighboring cells.”
BackgroundBrenner, M., Lobel, L., Borovok, I., Sigal, N., & Herskovits, A. A. (2018) · PLoS Genetics · doi:10.1371/journal.pgen.1007283 · Cited by 38
The impact of iron on Listeria monocytogenes; inside and outside the host
McLaughlin, H. P., Hill, C., & Gahan, C. G. M. (2010) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2010.10.005 · Cited by 33
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Self-citationLillebæk, E. M. S., Nielsen, S. L., Thomasen, R. S. S., Færgeman, N. J., & Kallipolitis, B. H. (2017) · Research in Microbiology · doi:10.1016/j.resmic.2017.03.002 · Cited by 34
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Self-citationRossmanith, P., & Wagner, M. (2010) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2010.04915.x · Cited by 32
“Fruehwirth et al. [submitted and IAFP, 97th Annual Meeting, JFPRDR, 73(Sup) p. 87] presented an ISPC for a real-time PCR assay amplifying the prfA locus of L. monocytogenes, which is based on a D-prfA L. monocytogenes EGDe strain (Böckmann et al. 1996; Rossmanith et al. 2006).”
MethodBöckmann, R., Dickneite, C., Goebel, W., & Bohne, J. (2000) · Molecular Microbiology · doi:10.1046/j.1365-2958.2000.01868.x · Cited by 32
“The [His]6-tagged PrfA protein (P2±7) was purified on Ni± NTA resin (Qiagen) as described by BoÈckmann et al. (1996).”
BackgroundMethodResultInfluentialSelf-citationLuo, Q., Rauch, M., Marr, A. K., Müller‐Altrock, S., & Goebel, W. (2004) · Molecular Microbiology · doi:10.1111/j.1365-2958.2003.03960.x · Cited by 33
“According to the protocols of Böckmann et al. (2000) and Lalic-Mülthaler et al.”
MethodSelf-citationIdentification of srv , a PrfA-Like Regulator of Group A Streptococcus That Influences Virulence
Reid, S. D., Montgomery, A. G., & Musser, J. M. (2004) · Infection and Immunity · doi:10.1128/iai.72.3.1799-1803.2004 · Cited by 29
“DNase I footprinting analysis and electrophoretic mobility shift assays have revealed that the HTH domain of PrfA binds to DNA sequences in the upstream region of genes under PrfA control (2, 8, 33).”
MethodHerler, M., Bubert, A., Goetz, M., et al. (2001) · Journal of Bacteriology · doi:10.1128/jb.183.19.5562-5570.2001 · Cited by 27
“As shown previously (2), PrfA tagged with six His’s at the N terminus retains full activity in vitro and in vivo.”
BackgroundMethodInfluentialSelf-citationRNA Helicase Important for Listeria monocytogenes Hemolytic Activity and Virulence Factor Expression
Netterling, S., Bäreclev, C., Vaitkevicius, K., & Johansson, J. (2015) · Infection and Immunity · doi:10.1128/iai.00849-15 · Cited by 26
“The mechanism by which CshA enhances PrfA activity remains to be elucidated, but it could involve regulation of glucose or iron levels— both have been shown to affect PrfA activity (62, 63).”
BackgroundSpecies-Specific Differences in the Activity of PrfA,the Key Regulator of Listerial VirulenceGenes
Mauder, N., Ecke, R., Mertins, S., Loeffler, D. I. M., Seidel, G., Sprehe, M., Hillen, W., Goebel, W., & Müller‐Altrock, S. (2006) · Journal of Bacteriology · doi:10.1128/jb.00473-06 · Cited by 26
“PrfALm and PrfA*Lm were purified as described previously (2).”
BackgroundMethodInfluentialSelf-citationdos Santos, P. T., Thomasen, R. S. S., Green, M. S., Færgeman, N. J., & Kallipolitis, B. H. (2020) · Journal of Bacteriology · doi:10.1128/jb.00156-20 · Cited by 24
“For the inhibitory concentration (IC) determination, overnight cultures of EGD wild type, EGDprfA* (prfA-G155S), or EGDΔprfA were diluted to an OD600 of 0.0002, and 4 ml was transferred to glass tubes containing increasing concentrations of MA, LNA, LLA, OA, or EA.”
BackgroundInfluentialShi, H., Trinh, Q., Xu, W., et al. (2012) · Food Control · doi:10.1016/j.foodcont.2012.11.008 · Cited by 23
Tetsch, L., & Jung, K. (2009) · Amino Acids · doi:10.1007/s00726-009-0235-x · Cited by 22
“In addition to that, two other promoters assure constitutive expression at low levels (Freitag et al. 1993) and also other listerial factors are known to modulate PrfA activity (Böckmann et al. 1996).”
BackgroundRhamnose-Inducible Gene Expression in Listeria monocytogenes
Fieseler, L., Schmitter, S., Teišerskas, J., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0043444 · Cited by 20
In vitro transcription of PrfA‐dependent and ‐independent genes of Listeria monocytogenes
Lalic-Mülthaler, M., Bohne, J., & Goebel, W. (2001) · Molecular Microbiology · doi:10.1046/j.1365-2958.2001.02607.x · Cited by 20
“There is convincing evidence for the involvement of other listerial (and environmental) factors in the differential PrfA-mediated gene regulation besides the cellular concentration of PrfA (Böckmann et al., 1996; 2000; Bohne et al., 1996; Bubert et al., 1997; Renzoni et al., 1997; Vega et al., 1998).”
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A review of minimal and defined media for growth of Listeria monocytogenes
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Regulation of expression of type I signal peptidases in Listeria monocytogenes
Raynaud, C., & Charbit, A. (2005) · Microbiology · doi:10.1099/mic.0.28066-0 · Cited by 17
“Moreover, in B. subtilis, ClpC controls the expression of competence by forming a complex with MecA to negatively regulate ComK (Bockmann et al., 1996).”
BackgroundGaballa, A., Sunil, S., Doll, E. V., Murphy, S. I., Bechtel, T. D., Guariglia-Oropeza, V., & Wiedmann, M. (2021) · PLoS ONE · doi:10.1371/journal.pone.0250989 · Cited by 15
“monocytogenes was shown to contain a factor that enhanced PrfA binding to its target promoter [90].”
BackgroundResultplcR papR -Independent Expression of Anthrolysin O by Bacillus anthracis
Ross, C. L., & Koehler, T. M. (2006) · Journal of Bacteriology · doi:10.1128/jb.00525-06 · Cited by 16
“PrfA-mediated gene activation requires binding of PrfA to a 14-bp palindromic sequence located in the promoter of target genes (6).”
BackgroundDoern, C. D., Holder, R. C., & Reid, S. D. (2008) · Microbiology · doi:10.1099/mic.0.2007/013466-0 · Cited by 15
“To further establish that the His6 tag used to purify rSrv was not responsible for the altered migration of target DNA in EMSA (Bockmann et al., 1996; Dickneite et al., 1998), an enterokinase cleavage reaction was used to generate untagged Srv.”
ller, S. S. ⁄., gler, S. K. ⁄., & Goebel, W. (1998) · FEMS Immunology & Medical Microbiology · doi:10.1111/j.1574-695x.1998.tb01139.x · Cited by 15
Self-citationProof of Concept for Recombinant Cellular Controls in Quantitative Molecular Pathogen Detection
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Metadata
- Authors
- Böckmann, R., Dickneite, C., Middendorf, B., Goebel, W., & Sokolovic, Z.
- Affiliations
- University of Würzburg (DE)
- Corresponding author
- Goebel, Werner
- ORCID
- Goebel, Werner
- Venue
- Molecular Microbiology
- Publisher
- Wiley
- Published
- 1996-11
- Volume
- 22
- Issue
- 4
- Pages
- 643-653
- ISSN
- 0950-382X (ISSN-L)
- 1365-2958
- OpenAlex
- W2122365028
- Cited by
- 101
- References
- 0
- Citations by year
- 2026: 1 · 2024: 1 · 2022: 3 · 2021: 2 · 2020: 2 · 2019: 4 · 2018: 1 · 2017: 2 · 2016: 2 · 2015: 5 · 2014: 2 · 2012: 3
- FWCI
- 5.68
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Molecular Microbiology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Deutsche Forschungsgemeinschaft
- Universität Ulm
- University of California, Davis
- Topics
- Life Sciences › Agricultural and Biological Sciences › Food Science › Listeria monocytogenes in Food Safety
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Agricultural and Biological Sciences › Food Science › Probiotics and Fermented Foods
- Keywords
- PrfA, Listeria monocytogenes, transcriptional regulation, DNA binding, transcriptional activator, iron regulation, virulence gene regulation, strain differences, protein-DNA interactions
- MeSH terms
- Bacterial Proteins, Bacterial Toxins, Culture Media, DNA, Bacterial, Escherichia coli, Heat-Shock Proteins, Hemolysin Proteins, Humans, Iron, Listeria monocytogenes, Membrane Proteins, Peptide Termination Factors, Promoter Regions, Genetic, Recombinant Fusion Proteins, Trans-Activators, Gene Expression
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