Efficacy of Sterile Fecal Filtrate Transfer for Treating Patients With Clostridium difficile Infection

Trimmomatic: a flexible trimmer for Illumina sequence data

Bolger, A. M., Lohse, M., & Usadel, B. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu170 · Cited by 65,548

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson, C. J., et al. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.01541-09 · Cited by 21,481

PAST: PALEONTOLOGICAL STATISTICAL SOFTWARE PACKAGE FOR EDUCATION AND DATA ANALYSIS

Hammer, Ø., Harper, D. A. T., & Ryan, P. D. (2001) · Palaeontologia Electronica · Cited by 17,871

UCHIME improves sensitivity and speed of chimera detection

Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C., & Knight, R. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btr381 · Cited by 15,114

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

Caporaso, J. G., Lauber, C. L., Walters, W. A., Berg-Lyons, D., Huntley, J., Fierer, N., Owens, S. M., Betley, J., Fraser, L., Bauer, M., et al. (2012) · The ISME Journal · doi:10.1038/ismej.2012.8 · Cited by 8,839

Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice

Ridaura, V. K., Faith, J. J., Rey, F. E., Cheng, J., Duncan, A. E., Kau, A. L., Griffin, N. W., Lombard, V., Henrissat, B., Bain, J. R., et al. (2013) · Science · doi:10.1126/science.1241214 · Cited by 3,788

Duodenal Infusion of Donor Feces for Recurrent Clostridium difficile

van Nood, E., Vrieze, A., Nieuwdorp, M., Fuentes, S., Zoetendal, E. G., de Vos, W. M., Visser, C. E., Kuijper, E. J., Bartelsman, J. F. W. M., Tijssen, J. G. P., et al. (2013) · New England Journal of Medicine · doi:10.1056/nejmoa1205037 · Cited by 3,708

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform

Fadrosh, D. W., Ma, B., Gajer, P., Sengamalay, N., Ott, S., Brotman, R. M., & Ravel, J. (2014) · Microbiome · doi:10.1186/2049-2618-2-6 · Cited by 1,698

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

Nurk, S., Bankevich, A., Antipov, D., Gurevich, A. A., Korobeynikov, A., Lapidus, A. L., Prjibelski, A. D., Pyshkin, A., Sirotkin, A., Sirotkin, Y., et al. (2013) · Journal of Computational Biology · doi:10.1089/cmb.2013.0084 · Cited by 1,352

Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease

Norman, J. M., Handley, S. A., Baldridge, M. T., Droit, L., Liu, C. Y., Keller, B. C., Kambal, A., Monaco, C. L., Zhao, G., Fleshner, P., et al. (2015) · Cell · doi:10.1016/j.cell.2015.01.002 · Cited by 1,285

Viral metagenomics of the gut virome of diarrheal children with Rotavirus A infection

Bao, S., Wang, H., Li, W., Wu, H., Lu, C., Liang, Y., Zhang, Q., Lü, X., Zhao, M., Lü, J., et al. (2023) · Gut Microbes · doi:10.1080/19490976.2023.2234653 · Cited by 21

Fecal Microbiota Transplantation: Indications, Methods, and Challenges

Lee, J. Y., Kim, Y., Kim, J., & Kim, J. K. (2024) · The Journal of Microbiology · doi:10.1007/s12275-024-00184-3 · Cited by 23

Balancing the risks and rewards of live biotherapeutics

Hill, C. (2019) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-019-0254-3 · Cited by 22

Impact of microbiome-based interventions on gastrointestinal pathogen colonization in the intensive care unit

Choy, A. M., & Freedberg, D. E. (2020) · Therapeutic Advances in Gastroenterology · doi:10.1177/1756284820939447 · Cited by 22

Gut virome dynamics: from commensal to critical player in health and disease

Cárdenas, L. A. C., Leonard, M. M., Baldridge, M. T., & Handley, S. A. (2025) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-025-01134-z · Cited by 25

Fecal virome transplantation: A promising strategy for the treatment of metabolic diseases

Zeng, C., Wan, S., Guo, M., Tan, X.-Z., Zeng, Y., Wu, Q., Xie, J.-J., Yan, P., Long, Y., Zheng, L., et al. (2024) · Biomedicine & Pharmacotherapy · doi:10.1016/j.biopha.2024.117065 · Cited by 24

Fecal virus-like particles are sufficient to reduce necrotizing enterocolitis

Offersen, S. M., Mao, X., Spiegelhauer, M. R., Larsen, F., Li, V. R., Nielsen, D. S., Aunsholt, L., Thymann, T., & Brunse, A. (2024) · Gut Microbes · doi:10.1080/19490976.2024.2392876 · Cited by 22

The phageome of patients with ulcerative colitis treated with donor fecal microbiota reveals markers associated with disease remission

Majzoub, M. E., Paramsothy, S., Haifer, C., Parthasarathy, R., Borody, T. J., Leong, R. W. L., Kamm, M. A., & Kaakoush, N. O. (2024) · Nature Communications · doi:10.1038/s41467-024-53454-4 · Cited by 24

Gut phages and their interactions with bacterial and mammalian hosts

Godsil, M., Ritz, N. L., Venkatesh, S., & Meeske, A. J. (2025) · Journal of Bacteriology · doi:10.1128/jb.00428-24 · Cited by 22

Diversity, Dynamics and Therapeutic Application of Clostridioides difficile Bacteriophages

Nale, J. Y., Thanki, A. M., Rashid, S. J., Shan, J., Vinner, G. K., Dowah, A. S. A., Cheng, J. K. J., Sicheritz‐Pontén, T., & Clokie, M. R. J. (2022) · Viruses · doi:10.3390/v14122772 · Cited by 19

Fecal virus transplantation has more moderate effect than fecal microbiota transplantation on changing gut microbial structure in broiler chickens

Feng, H., Xiong, J., Liang, S., Wang, Y., Zhu, Y., Hou, Q., Yang, X., & Yang, X. (2023) · Poultry Science · doi:10.1016/j.psj.2023.103282 · Cited by 19

Current perspectives on fecal microbiota transplantation in inflammatory bowel disease

Singh, A., Midha, V., Chauhan, N. S., & Sood, A. (2024) · Indian Journal of Gastroenterology · doi:10.1007/s12664-023-01516-8 · Cited by 20

Cryopreservation of the human gut microbiota: Current state and perspectives

Smirnova, D. V., Заломова, Л. В., Zagaynova, A. V., Makarov, V. V., Mezhevikina, L. M., Fesenko, E. E., & Yudin, S. M. (2019) · International Journal of Medical Microbiology · doi:10.1016/j.ijmm.2019.06.001 · Cited by 19

Bile salt metabolism is not the only factor contributing toClostridioides(Clostridium)difficiledisease severity in the murine model of disease

Jukes, C., Ijaz, U. Z., Buckley, A. M., Spencer, J., Irvine, J. J., Candlish, D., Li, J. V., Marchesi, J. R., & Douce, G. R. (2019) · Gut Microbes · doi:10.1080/19490976.2019.1678996 · Cited by 17

The rising dominance of microbiology: what to expect in the next 15 years?

Kumar, R., Sood, U., Kaur, J., Anand, S., Gupta, V., Patil, K. S., & Lal, R. (2021) · Microbial Biotechnology · doi:10.1111/1751-7915.13953 · Cited by 19

Evolution, the Immune System, and the Health Consequences of Socioeconomic Inequality

Rook, G. A. W. (2022) · mSystems · doi:10.1128/msystems.01438-21 · Cited by 21

Fecal microbiota transplantation–early steps on a long journey ahead

Khoruts, A. (2017) · Gut Microbes · doi:10.1080/19490976.2017.1316447 · Cited by 19

Exploring Mucin as Adjunct to Phage Therapy

Carroll‐Portillo, A., & Lin, H. C. (2021) · Microorganisms · doi:10.3390/microorganisms9030509 · Cited by 15

Hot topics on fecal microbiota transplantation for the treatment of inflammatory bowel disease

Zhang, X., Ishikawa, D., Ohkusa, T., Fukuda, S., & Nagahara, A. (2022) · Frontiers in Medicine · doi:10.3389/fmed.2022.1068567 · Cited by 18

Consistent Stool Metagenomic Biomarkers Associated with the Response To Melanoma Immunotherapy

Olekhnovich, E. I., Ivanov, A. B., Babkina, A. A., Sokolov, A. A., Игоревич, У. В., Fedorov, D. E., & Ilina, E. N. (2023) · mSystems · doi:10.1128/msystems.01023-22 · Cited by 17

Fecal microbiota transplantation in the ICU: perspectives on future implementations

Alagna, L., Haak, B. W., & Gori, A. (2019) · Intensive Care Medicine · doi:10.1007/s00134-019-05645-7 · Cited by 18

Engraftment of strictly anaerobic oxygen-sensitive bacteria in irritable bowel syndrome patients following fecal microbiota transplantation does not improve symptoms

Browne, P. D., Cold, F., Petersen, A. M., Halkjær, S. I., Christensen, A. H., Günther, S., & Hansen, L. H. (2021) · Gut Microbes · doi:10.1080/19490976.2021.1927635 · Cited by 18

Dietary Effects on the Gut Phageome

Howard, A., Carroll‐Portillo, A., Alcock, J., & Lin, H. C. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25168690 · Cited by 18

The ecology and plasticity of fish skin and gill microbiomes: seeking what matters in health and disease

McMurtrie, J., Bell, A. G., Cable, J., Temperton, B., & Tyler, C. R. (2025) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuaf027 · Cited by 18

The post-hematopoietic cell transplantation microbiome: relationships with transplant outcome and potential therapeutic targets

van Lier, Y. F., van den Brink, M. R. M., Hazenberg, M. D., & Markey, K. A. (2021) · Haematologica · doi:10.3324/haematol.2020.270835 · Cited by 18

Application of fecal microbial transplantation in hepatic encephalopathy after transjugular intrahepatic portosystemic shunt

Li, J., Wang, D., & Sun, J. (2022) · Medicine · doi:10.1097/md.0000000000028584 · Cited by 17

Gut virome in early life: origins and implications

Kennedy, E. A., & Holtz, L. R. (2022) · Current Opinion in Virology · doi:10.1016/j.coviro.2022.101233 · Cited by 18

Efficacy of lyophilised bacteria-rich faecal sediment and supernatant with reduced bacterial count for treating patients with Clostridioides difficile Infection – A novel method for capsule faecal microbiota transfer

Varga, A., Makszin, L., Bufa, A., Sipos, D., Kása, P., Pál, S., Rosenstiel, P. C., Sommer, F., Kocsis, B., & Péterfi, Z. (2023) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2023.1041384 · Cited by 17

Fecal microbiota transplantation in hematopoietic cell transplant and cellular therapy recipients: lessons learned and the path forward

Habibi, S., & Rashidi, A. (2023) · Gut Microbes · doi:10.1080/19490976.2023.2229567 · Cited by 17

Transfer of FRozen Encapsulated multi-donor Stool filtrate for active ulcerative Colitis (FRESCO): study protocol for a prospective, multicenter, double-blind, randomized, controlled trial

Stallmach, A., Grunert, P., Stallhofer, J., Löffler, B., Baier, M., Rödel, J., Kiehntopf, M., Neugebauer, S., Pieper, D. H., Junca, H., et al. (2022) · Trials · doi:10.1186/s13063-022-06095-1 · Cited by 17

Gaps in knowledge and future directions for the use of faecal microbiota transplant in the treatment of inflammatory bowel disease

Yalchin, M., Segal, J. P., Mullish, B. H., Quraishi, M. N., Iqbal, T. H., Marchesi, J. R., & Hart, A. L. (2019) · Therapeutic Advances in Gastroenterology · doi:10.1177/1756284819891038 · Cited by 17

Ethical Considerations in Microbial Therapeutic Clinical Trials

Woodworth, M. H., Sitchenko, K. L., Carpentieri, C., Friedman‐Moraco, R., Wang, T. L., & Kraft, C. S. (2017) · The New Bioethics · doi:10.1080/20502877.2017.1387386 · Cited by 16

The relationship between the phageome and human health: are bacteriophages beneficial or harmful microbes?

Fernández, L., Duarte, A. C., Rodrı́guez, A., & García, P. (2021) · Beneficial Microbes · doi:10.3920/bm2020.0132 · Cited by 18

Exploring the Potential of Fecal Microbiota Transplantation as a Therapy in Tuberculosis and Inflammatory Bowel Disease

Boicean, A., Bratu, D. G., Fleacă, R. S., Vasile, G., Shelly, L., Bîrsan, S., Bacila, C. I., & Hasegan, A. G. (2023) · Pathogens · doi:10.3390/pathogens12091149 · Cited by 16

Nasal microbiota transplantation: a gateway to novel treatments

Shekhar, S., Schwarzer, M., Dhariwal, A., & Petersen, F. C. (2025) · Trends in Microbiology · doi:10.1016/j.tim.2024.12.010 · Cited by 16

Evolving Strategies to Manage Clostridium difficile Colitis

Bowman, J. A., & Utter, G. H. (2019) · Journal of Gastrointestinal Surgery · doi:10.1007/s11605-019-04478-5 · Cited by 16

Fecal microbiota transplantation as therapy for recurrent Clostridioides difficile infection is associated with amelioration of delirium and accompanied by changes in fecal microbiota and the metabolome

Gotoh, K., Sakaguchi, Y. M., Kato, H., Osaki, H., Jodai, Y., Wakuda, M., Take, A., Hayashi, S., Morita, E., 杉江, 岳., et al. (2021) · Anaerobe · doi:10.1016/j.anaerobe.2021.102502 · Cited by 16

Capsules for Fecal Microbiota Transplantation in Recurrent Clostridium difficile Infection

Rao, K. K., Young, V. B., & Malani, P. (2017) · JAMA · doi:10.1001/jama.2017.17969 · Cited by 16

Engrafting gut bacteriophages have potential to modulate microbial metabolism in fecal microbiota transplantation

Ji, S., Ahmad, F., Peng, B.-Z., Yang, Y., Su, M., Zhao, X.-S., & Vatanen, T. (2025) · Microbiome · doi:10.1186/s40168-025-02046-5 · Cited by 17

Effects of lyophilised faecal filtrate compared with lyophilised donor stool on Clostridioides difficile recurrence: a multicentre, randomised, double-blinded, non-inferiority trial

Kao, D. H., Wong, K., Lee, C., Steiner, T. S., Franz, R., McDougall, C., Silva, M., Schmidt, T., Walter, J., Löebenberg, R., et al. (2025) · The Lancet. Gastroenterology & hepatology · doi:10.1016/s2468-1253(25)00190-6 · Cited by 15

Rehabilitation of a misbehaving microbiome: phages for the remodeling of bacterial composition and function

Baaziz, H., Baker, Z. R., Franklin, H. C., & Hsu, B. B. (2022) · iScience · doi:10.1016/j.isci.2022.104146 · Cited by 18

The gut virome in health and disease: new insights and associations

Shareefdeen, H., & Hill, C. (2022) · Current Opinion in Gastroenterology · doi:10.1097/mog.0000000000000885 · Cited by 15

Intestinal bile acids provide a surmountable barrier against C. difficile TcdB-induced disease pathogenesis

Icho, S., Ward, J. S., Tam, J., Kociolek, L. K., Theriot, C. M., & Melnyk, R. A. (2023) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2301252120 · Cited by 15

Bioinformatic Methodologies in Assessing Gut Microbiota

Fox, J. D., Sims, A., Ross, M., Bettag, J., Wilder, A., Natrop, D., Borsotti, A., Kolli, S., Mehta, S., Verma, H., et al. (2024) · Microbiology Research · doi:10.3390/microbiolres15040170 · Cited by 15

Genetically Engineered Bacteria for Treating Human Disease

Ma, B., Pan, Q., & Peppelenbosch, M. P. (2017) · Trends in Pharmacological Sciences · doi:10.1016/j.tips.2017.07.001 · Cited by 16

Our Microbiome: On the Challenges, Promises, and Hype

Federici, S., Suez, J., & Elinav, E. (2020) · Results and problems in cell differentiation · doi:10.1007/978-3-030-51849-3_20 · Cited by 15

Microbial evolutionary medicine: from theory to clinical practice

Andersen, S. B., Shapiro, B. J., Vandenbroucke‐Grauls, C. M. J. E., & de Vos, M. G. J. (2019) · The Lancet Infectious Diseases · doi:10.1016/s1473-3099(19)30045-3 · Cited by 15

Exploring the effects of faecal microbiota transplantation on cognitive function: A review of clinical trials

Alaeddin, S., Chatterjee, A., Roberts, T. L., Steiner-Lim, G. Z., Jensen, S. O., Gyengési, E., Muench, G. W., & Ho, V. (2025) · Brain Behavior & Immunity - Health · doi:10.1016/j.bbih.2025.101049 · Cited by 17

Overview of Clostridium difficile Infection: Life Cycle, Epidemiology, Antimicrobial Resistance and Treatment

Isidro, J., Mendes, A. L., Serrano, M., Henriques, A. O., & Oleastro, M. (2017) · InTech eBooks · doi:10.5772/intechopen.69053 · Cited by 13

Candida albicans-enteric viral interactions—The prostaglandin E2 connection and host immune responses

Mochochoko, B. M., Pohl, C. H., & O’Neill, H. G. (2022) · iScience · doi:10.1016/j.isci.2022.105870 · Cited by 14

Transplantation of fecal filtrate to neonatal pigs reduces post-weaning diarrhea: A pilot study

Larsen, C., Andersen, A. B., Sato, H., Brunse, A., & Thymann, T. (2023) · Frontiers in Veterinary Science · doi:10.3389/fvets.2023.1110128 · Cited by 14

Mycobacterium avium ssp. paratuberculosis and Crohn’s Disease—Diagnostic Microbiological Investigations Can Inform New Therapeutic Approaches

Aitken, J. M., Aitken, J., & Agrawal, G. K. (2024) · Antibiotics · doi:10.3390/antibiotics13020158 · Cited by 14

Dietary fiber for the prevention of childhood obesity: a focus on the involvement of the gut microbiota

Yang, Z., Yang, M., Deehan, E. C., Cai, C., Madsen, K. L., Wine, E., Li, G., Li, J., Liu, J., & Zhang, Z. (2024) · Gut Microbes · doi:10.1080/19490976.2024.2387796 · Cited by 17

Combatting Antibiotic Resistance: Leveraging Fecal Microbial Transplantation for Gut Health

Upreti, P., Devhare, L., Abdulmageed, L. H., Kumar, Y. G., Kumar, R., & Dharmamoorthy, G. (2024) · Springer eBooks · doi:10.1007/978-981-97-5272-0_10 · Cited by 13

Selected Mechanisms of Action of Bacteriophages in Bacterial Infections in Animals

Urban‐Chmiel, R., & Pyzik, E. (2025) · Viruses · doi:10.3390/v17010101 · Cited by 16

Therapeutic implications of the gastrointestinal microbiome

Kashyap, P., & Quigley, E. M. M. (2018) · Current Opinion in Pharmacology · doi:10.1016/j.coph.2018.01.004 · Cited by 15

What is unknown in using microbiota as a therapeutic?

Sung, J. J. �., & Wong, S. H. (2021) · Journal of Gastroenterology and Hepatology · doi:10.1111/jgh.15716 · Cited by 14

Methods of DNA introduction for the engineering of commensal microbes

Liu, D., Siguenza, N., Zarrinpar, A., & Ding, Y. (2022) · Engineering Microbiology · doi:10.1016/j.engmic.2022.100048 · Cited by 16

The gut microbiota: cause and cure of gut diseases

White, L. S., van den Bogaerde, J., & Kamm, M. A. (2018) · The Medical Journal of Australia · doi:10.5694/mja17.01067 · Cited by 14

Is there a role for microbiome-based approach in common variable immunodeficiency?

Poto, R., Ianiro, G., de Paulis, A., Spadaro, G., Marone, G., Gasbarrini, A., & Varricchi, G. (2023) · Clinical and Experimental Medicine · doi:10.1007/s10238-023-01006-3 · Cited by 16

Standards for fecal microbiota transplant: Tools and therapeutic advances

Belotserkovsky, I., Stabryla, L. M., Hunter, M. E., Allegretti, J. R., Callahan, B. J., Carlson, P. E., Daschner, P. J., Goudarzi, M., Guyard, C., Jackson, S. A., et al. (2024) · Biologicals · doi:10.1016/j.biologicals.2024.101758 · Cited by 13

Clostridioides difficile infection in inflammatory bowel disease: a clinical review

Tang, M., Wang, C., Xia, Y., Tang, J., Wang, J., & Shen, L. (2024) · Expert Review of Anti-infective Therapy · doi:10.1080/14787210.2024.2347955 · Cited by 14

Leveraging Organ‐on‐Chip Models to Investigate Host–Microbiota Dynamics and Targeted Therapies for Inflammatory Bowel Disease

Kaden, T., Alonso‐Román, R., Stallhofer, J., Gresnigt, M. S., Hube, B., & Mosig, A. S. (2024) · Advanced Healthcare Materials · doi:10.1002/adhm.202402756 · Cited by 13

We Are Not Alone: The iMOP Initiative and Its Roles in a Biology- and Disease-Driven Human Proteome Project

Tholey, A., Taylor, N. L., Heazlewood, J. L., & Bendixen, E. (2017) · Journal of Proteome Research · doi:10.1021/acs.jproteome.7b00408 · Cited by 13

Why is it so difficult to evaluate faecal microbiota transplantation as a treatment for ulcerative colitis?

Fairhurst, N. G., & Travis, S. P. L. (2018) · Intestinal Research · doi:10.5217/ir.2018.16.2.209 · Cited by 13

Gut virome dysbiosis following focal cerebral ischemia in mice

Chelluboina, B., Kieft, K., Breister, A. M., Anantharaman, K., & Vemuganti, R. (2022) · Journal of Cerebral Blood Flow & Metabolism · doi:10.1177/0271678x221107702 · Cited by 13

Novel technologies to characterize and engineer the microbiome in inflammatory bowel disease

Boix-Amorós, A., Monaco, H., Sambataro, E., & Clemente, J. C. (2022) · Gut Microbes · doi:10.1080/19490976.2022.2107866 · Cited by 13

Fecal Microbiota Transplantation Is Effective in Relieving Visceral Hypersensitivity in a Postinfectious Model

Bai, T., Zhang, L., Wang, H., Qian, W., Song, J., & Hou, X. (2018) · BioMed Research International · doi:10.1155/2018/3860743 · Cited by 13

Faecal microbiota transplantation in Australia: bogged down in regulatory uncertainty

Costello, S. P., & Bryant, R. V. (2019) · Internal Medicine Journal · doi:10.1111/imj.14212 · Cited by 12

Progress and challenges of functionalized bacterial encapsulation: A novel biotechnology for next-generation biotherapeutics

Zhang, Y., Wu, Y., Zhao, X., Ye, Q., Cao, L., Liu, M., Gao, B., Niu, Q., Chen, N., Duan, Z., et al. (2025) · Acta Pharmaceutica Sinica B · doi:10.1016/j.apsb.2025.07.028 · Cited by 12

How Can Nutrition Help with Gastrointestinal Tract–Based Issues?

Hesta, M., & Costa, M. (2021) · Veterinary Clinics of North America Equine Practice · doi:10.1016/j.cveq.2020.12.007 · Cited by 16

Microbiome therapeutics for the treatment of recurrent Clostridioides difficile infection

Bloom, P. P., & Young, V. B. (2022) · Expert Opinion on Biological Therapy · doi:10.1080/14712598.2022.2154600 · Cited by 12

Role of bacteria and microbial metabolites in immune modulation during early life

Oldereid, T. S., Jiang, X., Nordhus, K. S., Ponzetta, A., Bjørnholt, J. V., Björkström, N. K., Melum, E., & Rasmussen, H. (2023) · Scandinavian Journal of Immunology · doi:10.1111/sji.13336 · Cited by 12

Evolution and the critical role of the microbiota in the reduced mental and physical health associated with low socioeconomic status (SES)

Rook, G. A. W. (2024) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2024.105653 · Cited by 12

Prevention and treatment of recurrent Clostridioides difficile infection

Shin, J. H., & Warren, C. A. (2019) · Current Opinion in Infectious Diseases · doi:10.1097/qco.0000000000000587 · Cited by 12

STRUCTURING A FECAL MICROBIOTA TRANSPLANTATION CENTER IN A UNIVERSITY HOSPITAL IN BRAZIL

Terra, D., Vilela, E. G., Silva, R. O. S., LEÃO, L. A., Karine Sampaio, L. I. M. A., PASSOS, R. I. F. Â., Diniz, A. N., & Coelho, L. G. V. (2020) · Arquivos de Gastroenterologia · doi:10.1590/s0004-2803.202000000-79 · Cited by 11

Fecal microbiota transplantation: a review on current formulations inClostridioides difficileinfection and future outlooks

Rakotonirina, A., Galperine, T. K., & Allémann, É. (2022) · Expert Opinion on Biological Therapy · doi:10.1080/14712598.2022.2095901 · Cited by 14

Inulin reduces liver triacylglycerol by increasing lipid droplet lipolysis in fat-loaded mice

Chen, B., Shi, Y., Zhang, K., Chang, Y., Fu, P., Liu, P., & Zhang, S. (2022) · Food Research International · doi:10.1016/j.foodres.2022.112226 · Cited by 12

Beyond faecal microbiota transplantation, the non-negligible role of faecal virome or bacteriophage transplantation

Wu, D., Zhang, C., Liu, Y., Yao, J., Yang, X., Wu, S., Du, J., & Yang, X. (2023) · Journal of Microbiology Immunology and Infection · doi:10.1016/j.jmii.2023.02.005 · Cited by 14

Fecal Microbiota Transplantation in Human Immunodeficiency Virus-Infected Patient Population: A Systematic Review and Meta-Analysis

Malik, A., & Malik, M. I. (2023) · Gastroenterology Research · doi:10.14740/gr1624 · Cited by 12

Biofilm Formation of Clostridioides difficile, Toxin Production and Alternatives to Conventional Antibiotics in the Treatment of CDI

Dicks, L. M. T. (2023) · Microorganisms · doi:10.3390/microorganisms11092161 · Cited by 12

Fecal Microbiota Therapy With a Focus on Clostridium difficile Infection

Brandt, L. J. (2017) · Psychosomatic Medicine · doi:10.1097/psy.0000000000000511 · Cited by 12

Exploring the virome: An integral part of human health and disease

Gholamzad, A., Khakpour, N., Hashemi, S. M. A., Goudarzi, Y., Ahmadi, P., Gholamzad, M., Mohammadi, M., & Gholamzad, M. (2024) · Pathology - Research and Practice · doi:10.1016/j.prp.2024.155466 · Cited by 13

Bacteriophages: a double-edged sword in the gastrointestinal tract

Wei, Y., & Zhou, C. (2024) · Frontiers in Microbiomes · doi:10.3389/frmbi.2024.1450523 · Cited by 13

Primary Prevention of Clostridium difficile-Associated Diarrhea: Current Controversies and Future Tools

Rubin, Z., Martin, E. M., & Allyn, P. R. (2018) · Current Infectious Disease Reports · doi:10.1007/s11908-018-0639-4 · Cited by 11

Intestinal immune response is regulated by gut microbe

Tanemoto, S., Sujino, T., & Kanai∥, T. (2017) · Japanese Journal of Clinical Immunology · doi:10.2177/jsci.40.408 · Cited by 11

The Russian Doll Model: How Bacteria Shape Successful and Sustainable Inter-Kingdom Relationships

Pessione, E. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.573759 · Cited by 11

Viruses, cancer and non-self recognition

Padariya, M., Kalathiya, U., Mikac, S., Dziubek, K., Tovar-Fernandez, M. C., Sroka, E. M., Fåhræus, R., & Sznarkowska, A. (2021) · Open Biology · doi:10.1098/rsob.200348 · Cited by 13

Phage therapy for intestinal infections: efficacy, challenges, and future directions in translational research

Wang, X., Li, J., Ge, Z., Fan, J., Ma, D., Cao, H., Shen, J., Wang, Y., Liu, Z., Gomaa, S. E., et al. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1672198 · Cited by 10

Deciphering the Crucial Roles of the Quorum-Sensing Transcription Factor SdiA in NADPH Metabolism and (S)-Equol Production in Escherichia coli Nissle 1917

Wang, Z., Dai, Y., Azi, F., Dong, M., & Xia, X. (2024) · Antioxidants · doi:10.3390/antiox13030259 · Cited by 10

The emerging role of the gut virome in necrotizing enterocolitis

Yi, C., Chen, J., & She, X. (2024) · Heliyon · doi:10.1016/j.heliyon.2024.e30496 · Cited by 10

Perspective: on the future of fecal microbiota transplantation

Larsen, O. F. A., & Brummer, R. J. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1449133 · Cited by 10

Precision microbial regulation: Strategies for modulating GIT microbiota for host health

Pei, Z., Li, Q., Zhang, Y., Guo, C., Abdelsattar, M. M., & Bi, Y. (2025) · iMetaOmics. · doi:10.1002/imo2.54 · Cited by 12

Bioactive small molecules produced by the human gut microbiome modulate Vibrio cholerae sessile and planktonic lifestyles

Pauer, H., Teixeira, F. L., Robinson, A. V., Parente, T. E., de Melo, M. A. F., Lobo, L. A., Domingues, R. M. C. P., Allen‐Vercoe, E., Ferreira, R. B. R., & Antunes, L. C. M. (2021) · Gut Microbes · doi:10.1080/19490976.2021.1918993 · Cited by 10

Global trends in gut microbiota and clostridioides difficile infection research: A visualized study

Li, Z., Ke, H., Lin, Q., Shen, Z., & Chen, Y. (2022) · Journal of Infection and Public Health · doi:10.1016/j.jiph.2022.06.011 · Cited by 10

“Phage Transplantation in Allotransplantation”: Possible Treatment in Graft-Versus-Host Disease?

Górski, A., Jończyk‐Matysiak, E., Międzybrodzki, R., Weber‐Dąbrowska, B., & Borysowski, J. (2018) · Frontiers in Immunology · doi:10.3389/fimmu.2018.00941 · Cited by 10

Considering the Other Half of the Gut Microbiome: Bacteriophages

Maurice, C. F. (2019) · mSystems · doi:10.1128/msystems.00102-19 · Cited by 10

Butyrate Regulates Intestinal DNA Virome and Lipopolysaccharide Levels to Prevent High-Fat Diet-Related Liver Damage in Rats

Zhang, Z., Zhu, T., Li, Y., Yu, B., Tao, H., Zhao, H., & Cui, B. (2025) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.4c07966 · Cited by 11

Impact of prophages on gut microbiota and disease associations

Mahmoud, A. A., Wang, X., Liao, X., Zhang, S., Ding, T., & Ahn, J. (2025) · Microbial Pathogenesis · doi:10.1016/j.micpath.2025.107642 · Cited by 9

Bacteriophage-driven DNA inversions shape bacterial functionality and long-term co-existence in Bacteroides fragilis

Carasso, S., Keshet-David, R., Zhang, J., Hajjo, H., Kadosh-Kariti, D., Gefen, T., & Geva‐Zatorsky, N. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2501492 · Cited by 9

P182 Bacterial detection system for Staphylococcus aureus based on bacteriophage tail adsorption protein

Uchiyama, J., Uchiyama-Takemura, I., Watanabe, S., Sakaguchi, Y. M., Daibata, M., & Matsuzaki, S. (2013) · International Journal of Antimicrobial Agents · doi:10.1016/s0924-8579(13)70425-4

Sterile faecal transfer for C. difficile infection

Dickson, I. (2016) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/nrgastro.2016.204

A51 EFFECT OF LYOPHILIZED STERILE FECAL FILTRATE VS LYOPHILIZED DONOR STOOL ON RECURRENT CLOSTRIDIUM DIFFICILE INFECTION (RCDI): PRELIMINARY RESULTS FROM A RANDOMIZED, DOUBLE-BLIND PILOT STUDY

Kao, D. H., Roach, B., Walter, J., Löbenberg, R., & Wong, K. (2019) · Journal of the Canadian Association of Gastroenterology · doi:10.1093/jcag/gwz006.050 · Cited by 33

A21 EFFECTS OF LYOPHILIZED FECAL FILTRATE COMPARED TO LYOPHILIZED DONOR STOOL IN THE TREATMENT OF RECURRENT CLOSTRIDIOIDES DIFFICILE INFECTION: A MULTI-CENTER RANDOMIZED TRIAL

Kao, D., Wong, K., Lee, C., Steiner, T. S., Franz, R., McDougall, C., Silva, M., Yaskina, M., Walter, J., Loo, V. G., et al. (2024) · Journal of the Canadian Association of Gastroenterology · doi:10.1093/jcag/gwad061.021

Effects of Lyophilized Fecal Filtrate Compared with Lyophilized Donor Stool for Preventing Recurrent Clostridioides Difficile Infection: A Multi-Center, Randomized, Double-Blinded TrialPreprint

Kao, D. H., Wong, K., Lee, C., Steiner, T. S., Franz, R., McDougall, C., Silva, M., Schmidt, T., Walter, J., Löebenberg, R., et al. (2025) · SSRN Electronic Journal · doi:10.2139/ssrn.5216159