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Association of Systemic Lupus Erythematosus with C8orf13–BLK and ITGAM–ITGAX

Open access
Hom, Geoffrey, Graham, Robert R., Modrek, Barmak, Taylor, Kimberly E., Ortmann, Ward, Garnier, Sophie, Lee, Annette T., Chung, Sharon A., Ferreira, Ricardo C., Pant, P.V. Krishna, Ballinger, Dennis G., Kosoy, Roman, Demirci, F. Yesim, Kamboh, M. Ilyas, Kao, Amy H., Tian, Chao, Gunnarsson, Iva, Bengtsson, Anders A., Rantapää-Dahlqvist, Solbritt, Petri, Michelle, Manzi, Susan, Seldin, Michael F., Rönnblom, Lars, Syvänen, Ann-Christine, Criswell, Lindsey A., Gregersen, Peter K., Behrens, Timothy W.·2008·New England Journal of Medicine

Abstract

BACKGROUND: Systemic lupus erythematosus (SLE) is a clinically heterogeneous disease in which the risk of disease is influenced by complex genetic and environmental contributions. Alleles of HLA-DRB1, IRF5, and STAT4 are established susceptibility genes; there is strong evidence for the existence of additional risk loci. METHODS: We genotyped more than 500,000 single-nucleotide polymorphisms (SNPs) in DNA samples from 1311 case subjects with SLE and 1783 control subjects; all subjects were North Americans of European descent. Genotypes from 1557 additional control subjects were obtained from public data repositories. We measured the association between the SNPs and SLE after applying strict quality-control filters to reduce technical artifacts and to correct for the presence of population stratification. Replication of the top loci was performed in 793 case subjects and 857 control subjects from Sweden. RESULTS: Genetic variation in the region upstream from the transcription initiation site of the gene encoding B lymphoid tyrosine kinase (BLK) and C8orf13 (chromosome 8p23.1) was associated with disease risk in both the U.S. and Swedish case-control series (rs13277113; odds ratio, 1.39; P=1x10(-10)) and also with altered levels of messenger RNA in B-cell lines. In addition, variants on chromosome 16p11.22, near the genes encoding integrin alpha M (ITGAM, or CD11b) and integrin alpha X (ITGAX), were associated with SLE in the combined sample (rs11574637; odds ratio, 1.33; P=3x10(-11)). CONCLUSIONS: We identified and then confirmed through replication two new genetic loci for SLE: a promoter-region allele associated with reduced expression of BLK and increased expression of C8orf13 and variants in the ITGAM-ITGAX region.

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Research works printed but not linked: 3

  1. Hsu TM, 2001, Biotechniques, 31, 560, 562, 564
  2. Wasserman R, 1995, J Immunol, 155, 644, 10.4049/jimmunol.155.2.644 · doi:10.4049/jimmunol.155.2.644
  3. 10.1002/9780470515525.ch3 · doi:10.1002/9780470515525.ch3

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Metadata

Authors
Hom, G., Graham, R. R., Modrek, B., Taylor, K. E., Ortmann, W., Garnier, S., Lee, A. T., Chung, S. A., Ferreira, R. C., Pant, P. V. K., Ballinger, D. G., Kosoy, R., Demirci, F. Y., Kamboh, M. I., Kao, A. H., Tian, C., Gunnarsson, I., Bengtsson, A. A., Rantapää-Dahlqvist, S., Petri, M., Manzi, S., Seldin, M. F., Rönnblom, L., Syvänen, A.-C., Criswell, L. A., Gregersen, P. K., & Behrens, T. W.
Venue
New England Journal of Medicine
Published
2008-02-28
Volume
358
Issue
9
Pages
900-909
ISSN
  • 0028-4793 (ISSN-L)
  • 1533-4406
OpenAlex
W1985778164
Cited by
914
References
46
FWCI
69.29
Type
journal article
Language
en
Open access
bronze

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CoChat. (2026). Citation check: Association of Systemic Lupus Erythematosus with C8orf13–BLK and ITGAM–ITGAX. https://app.cochat.ai/papers/10.1056/nejmoa0707865
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Hom, G., Graham, R. R., Modrek, B., Taylor, K. E., Ortmann, W., Garnier, S., Lee, A. T., Chung, S. A., Ferreira, R. C., Pant, P. V. K., Ballinger, D. G., Kosoy, R., Demirci, F. Y., Kamboh, M. I., Kao, A. H., Tian, C., Gunnarsson, I., Bengtsson, A. A., Rantapää-Dahlqvist, S., . . . Behrens, T. W. (2008). Association of Systemic Lupus Erythematosus with C8orf13–BLK and ITGAM–ITGAX. New England Journal of Medicine. https://doi.org/10.1056/nejmoa0707865

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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.