The DOI matches its Crossref record; 53 of the 53 references it cites were found in a registry or an index.
A genomic screen for activators of the antioxidant response element
Open accessAbstract
The antioxidant response element (ARE) is a cis-acting regulatory enhancer element found in the 5′ flanking region of many phase II detoxification enzymes. Up-regulation of ARE-dependent target genes is known to have neuroprotective effects; yet, the mechanism of activation is largely unknown. By screening an arrayed collection of ≈15,000 full-length expression cDNAs in the human neuroblastoma cell line IMR-32 with an ARE-luciferase reporter, we have identified several cDNAs not previously associated with ARE activation. A subset of cDNAs, encoding sequestosome 1 (SQSTM1) and dipeptidylpeptidase 3 (DPP3), activated the ARE in primary mouse-derived cortical neurons. Overexpression of SQSTM1 and DPP3 in IMR-32 cells stimulated NF-E2-related factor 2 (NRF2) nuclear translocation and led to increased levels of NAD(P)H:quinone oxidoreductase 1, a protein which is transcriptionally regulated by the ARE. When transfected into IMR-32 neuroblastoma cells that were depleted of transcription factor NRF2 by RNA interference, SQSTM1 and DPP3 were unable to activate the ARE or induce NAD(P)H:quinone oxidoreductase 1 expression, indicating that the ARE activation upon ectopic expression of these cDNAs is mediated by NRF2. Studies with pharmacological inhibitors indicated that 1-phosphatidylinositol 3-kinase and protein kinase C signaling are essential for activity. Overexpression of these cDNAs conferred partial resistance to hydrogen peroxide or rotenone-induced toxicity, consistent with the induction of antioxidant and phase II detoxification enzymes, which can protect from oxidative stress. This work and other such studies may provide mechanisms for activating the ARE in the absence of general oxidative stress and a yet-unexploited therapeutic approach to degenerative diseases and aging.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The check wasn’t confident either way, so it gives no verdict — never disputed.
In the citing paper
“One of these SNPs (rs242561) was located in the regulatory region of the microtubule-associated protein Tau gene, which induced a strong binding of the NRF2/sMAF complex, leading to increased transcription and a reduced risk of parkinsonian diseases61,62.”
From Key points for the development of antioxidant cocktails to prevent cellular stress and damage caused by reactive oxygen species (ROS) during manned space missions (2021) · cites this paper as [62]
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Bjørkøy, G., Lamark, T., Brech, A., Outzen, H., Perander, M., Øvervatn, A., Stenmark, H., & Johansen, T. (2005) · The Journal of Cell Biology · doi:10.1083/jcb.200507002 · Cited by 3,276
Shimizu, S., Narita, M., Tsujimoto, Y., & Tsujimoto, Y. (1999) · Nature · doi:10.1038/20959 · Cited by 2,178
Rational siRNA design for RNA interference
Reynolds, A., Leake, D., Boese, Q., Scaringe, S., Marshall, W. S., & Khvorova, A. (2004) · Nature Biotechnology · doi:10.1038/nbt936 · Cited by 2,094
Ishii, T., Itoh, K., Takahashi, S., Sato, H., Yanagawa, T., Katoh, Y., Bannai, S., & Yamamoto, M. P. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.21.16023 · Cited by 1,473
Regulatory Mechanisms Controlling Gene Expression Mediated by the Antioxidant Response Element
Nguyen, T., Sherratt, P. J., & Pickett, C. B. (2003) · The Annual Review of Pharmacology and Toxicology · doi:10.1146/annurev.pharmtox.43.100901.140229 · Cited by 1,232
Ramos-Gomez, M., Kwak, M.-K., Dolan, P. M., Itoh, K., Yamamoto, M., Talalay, P., & Kensler, T. W. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.051618798 · Cited by 1,102
Huang, H.-C., Nguyen, T., & Pickett, C. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m206911200 · Cited by 1,070
Wakabayashi, N., Dinkova-Kostova, A. T., Holtzclaw, W. D., Kang, M.-I., Kobayashi, A., Yamamoto, M., Kensler, T. W., & Talalay, P. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0307301101 · Cited by 986
Lee, J., Calkins, M. J., Chan, K., Kan, Y. W., & Johnson, J. A. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m211558200 · Cited by 783
Self-citationAn important function of Nrf2 in combating oxidative stress: Detoxification of acetaminophen
Chan, K., Han, X.-D., & Kan, Y. W. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.081082098 · Cited by 766
McMahon, M. J., Itoh, K., Yamamoto, M. P., Chanas, S. A., Henderson, C. J., McLellan, L. I., Wolf, C. R., Cavin, C., & Hayes, J. D. (2001) · PubMed · Cited by 657
Kraft, A. D., Johnson, D. A., & Johnson, J. A. (2004) · Journal of Neuroscience · doi:10.1523/jneurosci.3817-03.2004 · Cited by 547
Self-citationRas-Dependent Induction of Cellular Responses by Constitutively Active Phosphatidylinositol-3 Kinase
Hu, Q., Klippel, A., Muslin, A. J., Fantl, W. J., & Williams, L. T. (1995) · Science · doi:10.1126/science.7701328 · Cited by 547
Nrf2, a multi‐organ protector?
Lee, J., Li, J., Johnson, D. A., Stein, T. D., Kraft, A. D., Calkins, M. J., Jakel, R. J., & Johnson, J. A. (2005) · The FASEB Journal · doi:10.1096/fj.04-2591hyp · Cited by 532
Self-citationCHANAS, S. A., JIANG, Q., McMAHON, M., McWALTER, G. K., McLELLAN, L. I., ELCOMBE, C. R., HENDERSON, C. J., WOLF, C. R., MOFFAT, G. J., ITOH, K., et al. (2002) · Biochemical Journal · doi:10.1042/bj20020320 · Cited by 460
The atypical PKC‐interacting protein p62 channels NF‐κB activation by the IL‐1–TRAF6 pathway
Sanz, L., Diaz‐Meco, M. T., Nakano, H., & Moscat, J. (2000) · The EMBO Journal · doi:10.1093/emboj/19.7.1576 · Cited by 448
Chen, X., & KUNSCH, C. A. (2004) · Current Pharmaceutical Design · doi:10.2174/1381612043452901 · Cited by 387
Numazawa, S., Ishikawa, M., Yoshida, A., Tanaka, S., & Yoshida, T. (2003) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.00043.2003 · Cited by 319
Sequestosome 1/p62 shuttles polyubiquitinated tau for proteasomal degradation
Babu, J. R., Geetha, T., & Wooten, M. W. (2005) · Journal of Neurochemistry · doi:10.1111/j.1471-4159.2005.03181.x · Cited by 315
Lee, J.-M., Shih, A. Y., Murphy, T. H., & Johnson, J. A. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m305204200 · Cited by 308
Self-citationYu, R., Lei, W., Mandlekar, S., Weber, M. J., Der, C. J., Wu, J., & Kong, A. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.39.27545 · Cited by 281
Calkins, M. J., Jakel, R. J., Johnson, D. A., Chan, K., Kan, Y. W., & Johnson, J. A. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0408487101 · Cited by 247
Self-citationLi, J., Johnson, D. A., Calkins, M. J., Wright, L. S., Svendsen, C. N., & Johnson, J. A. (2004) · Toxicological Sciences · doi:10.1093/toxsci/kfi027 · Cited by 229
Self-citationLee, J., Hanson, J. M., Chu, W. A., & Johnson, J. A. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m100734200 · Cited by 229
Self-citationStructure and functional properties of the ubiquitin binding protein p62
Geetha, T., & Wooten, M. W. (2002) · FEBS Letters · doi:10.1016/s0014-5793(02)02286-x · Cited by 223
Muiswinkel, F. L. V., & Kuiperij, H. B. (2005) · CNS & Neurological Disorders - Drug Targets · doi:10.2174/1568007054038238 · Cited by 209
Li, J., Lee, J., & Johnson, J. A. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m109380200 · Cited by 193
Self-citationIn vivo modulation of the Parkinsonian phenotype by Nrf2
Burton, N. C., Kensler, T. W., & Guilarte, T. R. (2006) · NeuroToxicology · doi:10.1016/j.neuro.2006.07.019 · Cited by 187
Johnson, D. A., Andrews, G. K., Xu, W., & Johnson, J. A. (2002) · Journal of Neurochemistry · doi:10.1046/j.1471-4159.2002.00913.x · Cited by 156
Self-citationGlatz, D. C., Rujescu, D., Tang, Y., Berendt, F. J., Hartmann, A. M., Faltraco, F., Rosenberg, C. K., Hulette, C., Jellinger, K., Hampel, H. J., et al. (2005) · Journal of Neurochemistry · doi:10.1111/j.1471-4159.2005.03552.x · Cited by 145
Transforming activity of MECT1‐MAML2 fusion oncoprotein is mediated by constitutive CREB activation
Wu, L., Liu, J., Gao, P., Nakamura, M., Cao, Y., Shen, H., & Griffin, J. D. (2005) · The EMBO Journal · doi:10.1038/sj.emboj.7600719 · Cited by 135
Lee, J., Moehlenkamp, J. D., Hanson, J. M., & Johnson, J. A. (2001) · Biochemical and Biophysical Research Communications · doi:10.1006/bbrc.2000.4106 · Cited by 124
Self-citationDifferential Gene Expression Patterns Revealed by Oligonucleotide Versus Long cDNA Arrays
Li, J. (2002) · Toxicological Sciences · doi:10.1093/toxsci/69.2.383 · Cited by 121
Nakaso, K., Yoshimoto, Y., Nakano, T., Takeshima, T., Fukuhara, Y., Yasui, K., Araga, S., Yanagawa, T., Ishii, T., & Nakashima, K. (2004) · Brain Research · doi:10.1016/j.brainres.2004.03.029 · Cited by 121
Jordán, J., Galindo, M. F., Tornero, D., Gonzalez-Garcia, C., & Ceña, V. (2004) · Journal of Neurochemistry · doi:10.1046/j.1471-4159.2003.02299.x · Cited by 118
Regional NAD(P)H:quinone oxidoreductase activity in Alzheimer’s disease
SantaCruz, K. S., Yazlovitskaya, E., Collins, J., Johnson, J., & DeCarli, C. (2004) · Neurobiology of Aging · doi:10.1016/s0197-4580(03)00117-9 · Cited by 116
Self-citationGenome-scale functional profiling of the mammalian AP-1 signaling pathway
Chanda, S. K., White, S. M., Orth, A. P., Reisdorph, R. M., Miraglia, L. J., Thomas, R. S., DeJesus, P., Mason, D. E., Huang, Q., Vega, R., et al. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1934839100 · Cited by 109
Self-citationActivation of Antioxidant/Electrophile-Responsive Elements in IMR-32 Human Neuroblastoma Cells
Moehlenkamp, J. D., & Johnson, J. A. (1999) · Archives of Biochemistry and Biophysics · doi:10.1006/abbi.1998.1046 · Cited by 80
Self-citationKomiya, T., Park, Y., Modi, S., Coxon, A. B., Oh, H., & Kaye, F. J. (2006) · Oncogene · doi:10.1038/sj.onc.1209627 · Cited by 79
The Anti-apoptotic Protein Mcl-1 Inhibits Mitochondrial Ca2+ Signals
Minagawa, N., Kruglov, E. A., Dranoff, J. A., Robert, M. E., Gores, G. J., & Nathanson, M. H. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m503210200 · Cited by 72
Dipeptidyl peptidase III is a zinc metallo-exopeptidase: Molecular cloning and expression
Fukasawa, K., FUKASAWA, M. K., Kanai, M., Fujii, S., Hirose, J., & Harada, M. (1998) · Biochemical Journal · doi:10.1042/bj3290275 · Cited by 64
Šimaga, Š., Babić, D., Osmak, M., Šprem, M., & Abramić, M. (2003) · Gynecologic Oncology · doi:10.1016/s0090-8258(03)00462-1 · Cited by 59
Evidence for p62 aggregate formation: Role in cell survival
Paine, M. G., Babu, J. R., Seibenhener, M. L., & Wooten, M. W. (2005) · FEBS Letters · doi:10.1016/j.febslet.2005.08.010 · Cited by 57
D’Souza, I., & Schellenberg, G. D. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m505809200 · Cited by 49
Zitzler, J., Link, D., Schäfer, R., Liebetrau, W., Kazinski, M., Bonin-Debs, A. L., Behl, C., Buckel, P., & Brinkmann, U. (2004) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m400054-mcp200 · Cited by 38
Targeting of p300/CREB Binding Protein Coactivators by Simian Virus 40 Is Mediated through p53
Borger, D. R., & DeCaprio, J. A. (2006) · Journal of Virology · doi:10.1128/jvi.80.9.4292-4303.2006 · Cited by 36
p62 modulates Akt activity via association with PKCζ in neuronal survival and differentiation
Joung, I., Kim, H. J., & Kwon, Y. K. (2005) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2005.06.138 · Cited by 33
Chromosomal Localization and cDNA Cloning of the Human DBP and TEF Genes
Khatib, Z. A., Inaba, T., Valentine, M. B., & Look, A. T. (1994) · Genomics · doi:10.1006/geno.1994.1510 · Cited by 31
Towards high-throughput characterization of small molecule mechanisms of action
Luesch, H. (2006) · Molecular BioSystems · doi:10.1039/b609384a · Cited by 29
Self-citationNakaso, K., Kitayama, M., Fukuda, H., Kimura, K., Yanagawa, T., Ishii, T., Nakashima, K., & Yamada, K. (2000) · Neuroscience Letters · doi:10.1016/s0304-3940(00)00836-3 · Cited by 26
Identification of Dipeptidyl Peptidase III in Human Neutrophils
Hashimoto, J., Yamamoto, Y., Kurosawa, H., Nishimura, K., & Hazato, T. (2000) · Biochemical and Biophysical Research Communications · doi:10.1006/bbrc.2000.2827 · Cited by 24
Marikawa, Y., Fujita, T. C., & Alarcón, V. B. (2004) · Development Genes and Evolution · doi:10.1007/s00427-003-0377-x · Cited by 20
Angiotensin II Inactivation Process in Cultured Mouse Spinal Cord Cells
Michèle Allard, A., Simonnet, G., Dupouy, B., & Vincent, J. D. (1987) · Journal of Neurochemistry · doi:10.1111/j.1471-4159.1987.tb05700.x · Cited by 13
Research works printed but not linked: 1
- M McMahon, K Itoh, M Yamamoto, SA Chanas, CJ Henderson, LI McLellan, CR Wolf, C Cavin, JD Hayes Cancer Res 61, 3299–3307 (2001).
Cited by
Sorted by citations
Redox regulation of cell survival
Trachootham, D., Lu, W., Ogasawara, M. A., Valle, N. R.-D., & Huang, P. (2008) · Antioxidants & Redox Signaling · doi:10.1089/ars.2007.1957 · Cited by 1,781
Selective autophagy mediated by autophagic adapter proteins
Johansen, T., & Lamark, T. (2011) · Autophagy · doi:10.4161/auto.7.3.14487 · Cited by 1,788
The Molecular Mechanisms Regulating the KEAP1-NRF2 Pathway
Baird, L., & Yamamoto, M. P. (2020) · Molecular and Cellular Biology · doi:10.1128/mcb.00099-20 · Cited by 1,671
Jain, A., Lamark, T., Sjøttem, E., Bowitz Larsen, K., Atesoh Awuh, J., Øvervatn, A., McMahon, M., Hayes, J. D., & Johansen, T. (2010) · Journal of Biological Chemistry · doi:10.1074/jbc.m110.118976 · Cited by 1,472
Linker, R. A., Lee, D.-H., Ryan, S., van Dam, A. M., Conrad, R., Bista, P., Zeng, W., Hronowsky, X., Buko, A., Chollate, S., et al. (2011) · Brain · doi:10.1093/brain/awq386 · Cited by 1,155
Metadata
- Authors
- Liu, Y., Kern, J. T., Walker, J. R., Johnson, J. A., Schultz, P. G., & Luesch, H.
- Affiliations
- University of Florida (US)
- University of Wisconsin–Madison (US)
- Genomics Institute of the Novartis Research Foundation (US)
- Scripps Research Institute (US)
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2007-03-20
- Volume
- 104
- Issue
- 12
- Pages
- 5205-5210
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC1829287
- OpenAlex
- W2147984935
- Cited by
- 196
- References
- 53
- Citations by year
- 2026: 2 · 2025: 6 · 2024: 8 · 2023: 6 · 2022: 11 · 2021: 15 · 2020: 15 · 2019: 5 · 2018: 7 · 2017: 13 · 2016: 12 · 2015: 14 · 2014: 11 · 2013: 12 · 2012: 12
- FWCI
- 4.91
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Ellison Medical Foundation
- American Heart Association
- McKnight Foundation
- National Institute of Environmental Health Sciences (ES10042, R01ES010042, ES08089, R01ES008089, R29ES008089)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics, phytochemicals, and oxidative stress
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Glutathione Transferases and Polymorphisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Redox biology and oxidative stress
- Keywords
- antioxidant response element, Nrf2, NAD(P)H:quinone oxidoreductase 1, p62, phase II enzymes, oxidative stress, neuroprotection, PI3K signaling, protein kinase C signaling, neuroblastoma cells, cortical neurons, neurodegenerative diseases
- MeSH terms
- Sequestosome-1 Protein, Animals, Antioxidants, Cell Nucleus, Cells, Cultured, Cerebral Cortex, Enzyme Induction, Heat-Shock Proteins, NADPH Dehydrogenase, Trans-Activators, Gene Library, Gene Expression, NAD(P)H Dehydrogenase (Quinone), Genome, DNA, Complementary, Oxidative Stress, Response Elements, Oligonucleotide Array Sequence Analysis, Protein Transport, Genomics, RNA, Small Interfering, Protein Kinase Inhibitors, Adaptor Proteins, Signal Transducing, NF-E2-Related Factor 2, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review