The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.
Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789
Open accessAbstract
We sequenced the genome of Saccharomyces cerevisiae strain YJM789, which was derived from a yeast isolated from the lung of an AIDS patient with pneumonia. The strain is used for studies of fungal infections and quantitative genetics because of its extensive phenotypic differences to the laboratory reference strain, including growth at high temperature and deadly virulence in mouse models. Here we show that the ≈12-Mb genome of YJM789 contains ≈60,000 SNPs and ≈6,000 indels with respect to the reference S288c genome, leading to protein polymorphisms with a few known cases of phenotypic changes. Several ORFs are found to be unique to YJM789, some of which might have been acquired through horizontal transfer. Localized regions of high polymorphism density are scattered over the genome, in some cases spanning multiple ORFs and in others concentrated within single genes. The sequence of YJM789 contains clues to pathogenicity and spurs the development of more powerful approaches to dissecting the genetic basis of complex hereditary traits.
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Cites
Versatile and open software for comparing large genomes
Kurtz, S., Phillippy, A., Delcher, A. L., Smoot, M., Shumway, M., Antonescu, C., & Salzberg, S. L. (2004) · Genome Biology · doi:10.1186/gb-2004-5-2-r12 · Cited by 5,254
Intragenic tandem repeats generate functional variability
Verstrepen, K. J., Jansen, A., Lewitter, F., & Fink, G. R. (2005) · Nature Genetics · doi:10.1038/ng1618 · Cited by 616
Invasive Saccharomyces Infection: A Comprehensive Review
Enache-Angoulvant, A., & Hennequin, C. (2005) · Clinical Infectious Diseases · doi:10.1086/497832 · Cited by 369
Microbial Genes in the Human Genome: Lateral Transfer or Gene Loss?
Salzberg, S. L., White, O., Peterson, J., & Eisen, J. A. (2001) · Science · doi:10.1126/science.1061036 · Cited by 326
Cited by
Horizontal gene transfer in eukaryotic evolution
Keeling, P. J., & Palmer, J. D. (2008) · Nature Reviews Genetics · doi:10.1038/nrg2386 · Cited by 1,355
Gene–Environment Interaction in Yeast Gene Expression
Smith, E. N., & Kruglyak, L. (2008) · PLoS Biology · doi:10.1371/journal.pbio.0060083 · Cited by 391
Biotechnology of non-Saccharomyces yeasts—the ascomycetes
Johnson, E. A. (2013) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-012-4497-y · Cited by 193
A Genome-Wide Map of Mitochondrial DNA Recombination in Yeast
Fritsch, E. S., Chabbert, C. D., Klaus, B., & Steinmetz, L. M. (2014) · Genetics · doi:10.1534/genetics.114.166637 · Cited by 77
Self-citationTranscription factor binding variation in the evolution of gene regulation
Dowell, R. D. (2010) · Trends in Genetics · doi:10.1016/j.tig.2010.08.005 · Cited by 61
Metadata
- Authors
- Wei, W., McCusker, J. H., Hyman, R. W., Jones, T., Ning, Y., Cao, Z., Gu, Z., Bruno, D., Miranda, M., Nguyen, M., Wilhelmy, J., Komp, C., Tamse, R., Wang, X., Jia, P., Luedi, P., Oefner, P. J., David, L., Dietrich, F. S., Li, Y., Davis, R. W., & Steinmetz, L. M.
- Venue
- Proceedings of the National Academy of Sciences
- Published
- 2007-07-31
- Volume
- 104
- Issue
- 31
- Pages
- 12825-12830
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- OpenAlex
- W2137148725
- Cited by
- 252
- References
- 4
- FWCI
- 7.18
- Type
- journal article
- Language
- en
- Open access
- green
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- Wei, W., McCusker, J. H., Hyman, R. W., Jones, T., Ning, Y., Cao, Z., Gu, Z., Bruno, D., Miranda, M., Nguyen, M., Wilhelmy, J., Komp, C., Tamse, R., Wang, X., Jia, P., Luedi, P., Oefner, P. J., David, L., Dietrich, F. S., . . . Steinmetz, L. M. (2007). Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.0701291104
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