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The T790M mutation in EGFR kinase causes drug resistance by increasing the affinity for ATP
Open accessAbstract
Lung cancers caused by activating mutations in the epidermal growth factor receptor (EGFR) are initially responsive to small molecule tyrosine kinase inhibitors (TKIs), but the efficacy of these agents is often limited because of the emergence of drug resistance conferred by a second mutation, T790M. Threonine 790 is the “gatekeeper” residue, an important determinant of inhibitor specificity in the ATP binding pocket. The T790M mutation has been thought to cause resistance by sterically blocking binding of TKIs such as gefitinib and erlotinib, but this explanation is difficult to reconcile with the fact that it remains sensitive to structurally similar irreversible inhibitors. Here, we show by using a direct binding assay that T790M mutants retain low-nanomolar affinity for gefitinib. Furthermore, we show that the T790M mutation activates WT EGFR and that introduction of the T790M mutation increases the ATP affinity of the oncogenic L858R mutant by more than an order of magnitude. The increased ATP affinity is the primary mechanism by which the T790M mutation confers drug resistance. Crystallographic analysis of the T790M mutant shows how it can adapt to accommodate tight binding of diverse inhibitors, including the irreversible inhibitor HKI-272, and also suggests a structural mechanism for catalytic activation. We conclude that the T790M mutation is a “generic” resistance mutation that will reduce the potency of any ATP-competitive kinase inhibitor and that irreversible inhibitors overcome this resistance simply through covalent binding, not as a result of an alternative binding mode.
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“The T790M mutation is believed to render the receptor refractory to inhibition by these reversible EGFR TKIs through exerting effects on both steric hindrance (22) and increased ATP affinity (23).”
From AZD9291, an Irreversible EGFR TKI, Overcomes T790M-Mediated Resistance to EGFR Inhibitors in Lung Cancer (2014) · cites this paper as [23]
In the citing paper
“The EGFR-T790M mutation confers resistance by reversing the sensitization conferred by primary activating mutations, but it does so by altering the gatekeeper residue in the ATP-site that is known to be an important determinant of inhibitor specificity 50,57.”
From Structural, Biochemical, and Clinical Characterization of Epidermal Growth Factor Receptor (EGFR) Exon 20 Insertion Mutations in Lung Cancer (2013) · cites this paper as [57]
In the citing paper
“This mutation, leads to an increase in ATP affinity, thus making it more difficult for reversible EGFR TKIs gefitinib and erlotinib to bind the EGFR TKI domain (11).”
From EGFR Mutations and Resistance to Irreversible Pyrimidine-Based EGFR Inhibitors (2015) · cites this paper as [11]
In the citing paper
“Covalent binding is required to overcome the increased ATP affinity mediated by T790M (11).”
From EGFR Mutations and Resistance to Irreversible Pyrimidine-Based EGFR Inhibitors (2015) · cites this paper as [11]
In the citing paper
“The presence of the T790M variant reduces binding of first-generation or second-generation EGFR-TKIs to the ATP-binding pocket of EGFR, thereby reducing EGFR-TKI–mediated inhibition of downstream signaling and potentially leading to disease progression.17–19”
From Osimertinib or Platinum–Pemetrexed in EGFR T790M–Positive Lung Cancer (2017) · cites this paper as [17]
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A structural perspective on targeting the RTK /Ras/ MAP kinase pathway in cancer
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“Resistance invariably develops to the first- and second-generation agents described above, most commonly due to a second mutation in the EGFR kinase domain, T790M.(45,46) The T790M mutation lies at the back of the ATP-site, altering the shape of the inhibitor binding site.”
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BackgroundGenetic profiling and epidermal growth factor receptor-directed therapy in nonsmall cell lung cancer
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Novel morpholin-3-one fused quinazoline derivatives as EGFR tyrosine kinase inhibitors
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“The substitution of methionine with threonine at position 790 in the exon 20 blocks the binding of first generation EGFR-TKIs to the ATP pocket and increases its affinity to ATP rather than to EGFR-TKIs (126,127).”
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“More importantly, however, it restores the affinity for ATP, similar to that of wild-type EGFR [43].”
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“However, patients with NSCLC who initially respond to EGFR-TKIs often acquire resistance due to the secondary mutations of EGFR, including T790M (5).”
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“Given that the T790M mutation restores ATP affinity to a level comparable to that of WT EGFR (Yun et al., 2008), concentrations of second-generation TKIs necessary to inhibit T790M-mutated tumors in patients may result in side effects that ultimately limit their use.”
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“In NSCLC cells with initial EGFR-L858R mutation, the presence of secondary T790M mutation was found to affect the binding of gefitinib to mutated EGFR, with increased affinity of L858-T790M-EGFR to ATP when compared to L858 alone [30].”
Regulation of the Ligand-dependent Activation of the Epidermal Growth Factor Receptor by Calmodulin
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“4mMdepending of the cell type (50), and the affinity constant ofATP for the EGFR is lower than 10 M (51, 52).”
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Savonarola, A., Palmirotta, R., Guadagni, F., & Silvestris, F. (2012) · The Pharmacogenomics Journal · doi:10.1038/tpj.2012.28 · Cited by 36
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“Currently, the known mechanisms of acquired resistance are as follows [13-17]: 1) the secondary gatekeeper EGFR T790M mutation which increases ATP affinity and subsequently prevents drug binding to the kinase domain; 2) activation of members of downstream signaling pathways such as RAS-RAF-ERK MAPK pathway and PI3K/AK…”
BackgroundTargeting the EGFR T790M mutation in non-small-cell lung cancer
Normanno, N., Maiello, M. R., Chicchinelli, N., Iannaccone, A., Esposito, C., Cecio, R. D., D’Alessio, A., & Luca, A. D. (2016) · Expert Opinion on Therapeutic Targets · doi:10.1080/14728222.2017.1272582 · Cited by 37
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“Another is that introduction of the T790 M mutation increases the affinity for adenosine triphosphate (ATP) which reduces binding of competing TKIs such as gefitinib and erlotinib [19, 20, 32].”
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Somatic alterations as the basis for resistance to targeted therapies
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“This mutation is thought to block the binding of inhibitors to the ATP-binding site, thus leading to the constitutive activation of EGFR [112].”
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“But recent studies have showed that T790M mutants retain low nanomolar affinity for gefitinib and the drug resistance in these mutants has been proposed to be due to the restoration of ATP affinity to the level of wild type levels [5].”
BackgroundPharmacogenetics of EGFR in Lung Cancer: Perspectives and Clinical Applications
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“Approximately half of patients have a secondary EGFR mutation in exon 20 (T790M), which is proposed to cause resistance by interfering with binding of TKIs or by increasing the affinity for ATP (11, 12).”
BackgroundPyridones as Highly Selective, Noncovalent Inhibitors of T790M Double Mutants of EGFR
Bryan, M. C., Burdick, D. J., Chan, B. K., Chen, Y., Clausen, S., Dotson, J., Eigenbrot, C. W., Elliott, R. L., Hanan, E. J., Heald, R. A., et al. (2015) · ACS Medicinal Chemistry Letters · doi:10.1021/acsmedchemlett.5b00428 · Cited by 36
Evidence-Based Best Practices for EGFR T790M Testing in Lung Cancer in Canada
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“Threonine 790 is the gatekeeper for EGFR because it is located at the entrance to the hydrophobic ATP-binding pocket; this mutation promotes cancer cell proliferation via increasing the catalytic activity of EGFR [17].”
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“T790M may increase the GTP affinity in the tyrosine kinase domain of the EGFR, or hindrance to TKI binding to the tyrosine kinase domain [75,76].”
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“In particular, 1,3,4-O-Bu3ManNAc sensitized drug-resistant pancreatic cancer cells to the tyrosine kinase inhibitors (TKIs) erlotinib and gefitinib [1] that are currently used as cancer therapeutics but are only modestly effective because of rapid onset drug resistance in patients [35].”
BackgroundInfluentialRecent advances in multitarget-directed ligands via in silico drug discovery
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“For example, T790M is a known resistance mutation in EGFR that notably reduces the potency of first-generation inhibitors [ 25 ].”
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“As mutations L858R_T790M and delL747_P753insS largely corresponded to poor clinical outcomes and active TKI resistance [16, 22, 23, 53], their decreased binding with ErbB-3 may encourage the binding between cMet and ErbB-3, which strengthens the ErbB-3 downstream signaling.”
BackgroundResultInfluentialNew molecular targeted therapies for advanced non-small-cell lung cancer.
Méndez, M., Custodio, A., & Provencio, M. (2011) · Europe PMC (PubMed Central) · doi:10.3978/j.issn.2072-1439.2010.12.03 · Cited by 34
“Instead, L858R-T790MEGFR had greater affinity to ATP than L858R alone, which is predicted to decrease binding of gefitinib and erlotinib, because these drugs are ATP-competitive kinase inhibitors (7).”
BackgroundThe role of the molecular footprint of EGFR in tailoring treatment decisions in NSCLC: Figure 1
Gately, K. A., O’Flaherty, J. D., Cappuzzo, F., Pirker, R., Kerr, K. M., & O'Byrne, K. J. (2011) · Journal of Clinical Pathology · doi:10.1136/jclinpath-2011-200275 · Cited by 35
“The T790M mutation may result in increased affinity of EGFR for ATP compared with erlotinib or gefitinib and that this is the primary mechanism by which the mutation confers drug resistance.(51) Thus, it should be possible to overcome the resistance by developing TKIs that have a higher affinity for the T790M kinase.”
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“It was discovered that ATP-binding cassette subfamily B member 1 (ABCB1) overexpression, which was associated with cancer stem cell (CSC) properties and EMT, was involved in the acquired resistance to MET inhibitors.”
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“Compared to wild type EGFR, proteins coded for with the gene with the T790M mutation have a 5-fold increased efficacy of kinase activation [51]; this increased activity is responsible for the poor outcome of lung cancer patients [52].”
BackgroundTargeting the Gatekeeper: Osimertinib in EGFR T790M Mutation–Positive Non–Small Cell Lung Cancer
Skoulidis, F., & Papadimitrakopoulou, V. A. (2016) · Clinical Cancer Research · doi:10.1158/1078-0432.ccr-15-2815 · Cited by 35
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“…stabilized structures for wild-type EGFRD and EGFRD-L858R-T790M than for EGFRD-L858R and EGFRD-T790M and indicate that the insertion of the T790M mutation into L858R mutants resembles the wild-type EGFR structure based on the restoration of ATP affinity to near wild-type levels (Yun et al., 2008).”
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Targeting MERTK and AXL in EGFR Mutant Non-Small Cell Lung Cancer
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“These common canonical mutants lead to structural changes that change ATP kinetics, enhance EGFR activation (promoting an “on” instead of “off” switch), and generate a favorable therapeutic window to almost all EGFR TKIs that have completed clinical development, including: 1 generation reversible inhibitors (gefitinib…”
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Discovery of a Noncovalent, Mutant-Selective Epidermal Growth Factor Receptor Inhibitor
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Treatment of nonsmall cell lung cancer
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“Second-generation TKIs targeting EGFR have a higher affinity for the ATP-binding domain and form an irreversible covalent bond to the ATPbinding site.”
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FBXW 7 deletion contributes to lung tumor development and confers resistance to gefitinib therapy
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“Among those resistance mechanisms, the secondary EGFR mutation, T790M in exon 20 of the EGFR gene, plays the most significant role and arises in ~ 60% of the cases (Sun et al., 2013; Sutto and Gervasio, 2013; Yun et al., 2008).”
BackgroundAZD9291 in EGFR -Mutant Advanced Non-Small-Cell Lung Cancer Patients
Remon, J., & Planchard, D. (2015) · Future Oncology · doi:10.2217/fon.15.250 · Cited by 33
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“The T790M mutation may result in an alteration of EGFR topology that precludes the binding of reversible EGFR-TKIs through steric hindrance, or T790M may increase the affinity of the kinase domain for ATP [21,33–35].”
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Metadata
- Authors
- Yun, C.-H., Mengwasser, K. E., Toms, A. V., Woo, M. S., Greulich, H., Wong, K.-K., Meyerson, M., & Eck, M. J.
- Affiliations
- Dana-Farber Cancer Institute (US)
- Broad Institute (US)
- Brigham and Women's Hospital (US)
- Corresponding author
- Eck, Michael J.
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2008-02-12
- Volume
- 105
- Issue
- 6
- Pages
- 2070-2075
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC2538882
- OpenAlex
- W2159013299
- Cited by
- 2,118
- References
- 42
- Citations by year
- 2026: 101 · 2025: 125 · 2024: 94 · 2023: 141 · 2022: 132 · 2021: 138 · 2020: 107 · 2019: 111 · 2018: 144 · 2017: 142 · 2016: 139 · 2015: 143 · 2014: 112 · 2013: 121 · 2012: 115
- FWCI
- 79.66
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Digital Access to Scholarship at Harvard (DASH) (Harvard University) (submittedVersion, cc-by)
- Funders
- Leukemia and Lymphoma Society
- National Institutes of Health
- Novartis Institutes for BioMedical Research
- National Cancer Institute (R01CA116020, CA 116020, R01CA080942, CA080942)
- Topics
- Health Sciences › Medicine › Pulmonary and Respiratory Medicine › Lung Cancer Treatments and Mutations
- Health Sciences › Medicine › Oncology › HER2/EGFR in Cancer Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
- Keywords
- T790M mutation, EGFR, drug resistance, tyrosine kinase inhibitors, gefitinib, erlotinib, ATP affinity, gatekeeper residue, L858R mutation, irreversible inhibitors, covalent binding, kinase activation, lung cancer, ATP-competitive inhibitors
- MeSH terms
- Gefitinib, Adenosine Triphosphate, Animals, Drug Resistance, Enzyme Inhibitors, Insecta, Kinetics, Mutation, Protein Conformation, Quinazolines, Crystallography, X-Ray, ErbB Receptors
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