Cell proliferation at 122°C and isotopically heavy CH 4 production by a hyperthermophilic methanogen under high-pressure cultivation
Open accessAbstract
We have developed a technique for cultivation of chemolithoautotrophs under high hydrostatic pressures that is successfully applicable to various types of deep-sea chemolithoautotrophs, including methanogens. It is based on a glass-syringe-sealing liquid medium and gas mixture used in conjunction with a butyl rubber piston and a metallic needle stuck into butyl rubber. By using this technique, growth, survival, and methane production of a newly isolated, hyperthermophilic methanogen Methanopyrus kandleri strain 116 are characterized under high temperatures and hydrostatic pressures. Elevated hydrostatic pressures extend the temperature maximum for possible cell proliferation from 116°C at 0.4 MPa to 122°C at 20 MPa, providing the potential for growth even at 122°C under an in situ high pressure. In addition, piezophilic growth significantly affected stable carbon isotope fractionation of methanogenesis from CO 2 . Under conventional growth conditions, the isotope fractionation of methanogenesis by M. kandleri strain 116 was similar to values (−34‰ to−27‰) previously reported for other hydrogenotrophic methanogens. However, under high hydrostatic pressures, the isotope fractionation effect became much smaller (<−12‰), and the kinetic isotope effect at 122°C and 40 MPa was −9.4‰, which is one of the smallest effects ever reported. This observation will shed light on the sources and production mechanisms of deep-sea methane.
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High-pressure environments are often associated with high temperatures, such as in submarine hydrothermal vents or the deep continental subsurface.
“For example, high-pressure environments are often associated with high temperatures, such as in submarine hydrothermal vents or the deep continental subsurface (e.g., Takai et al., 2008), and low pH often causes an excess of heavy metals (e.g., Robbins et al., 2000).”
From The Astrobiology Primer v2.0 (2016) · cites this paper as Takai et al., 2008
Cites
Evidence from fluid inclusions for microbial methanogenesis in the early Archaean era
Ueno, Y., Yamada, K., Yoshida, N., Maruyama, S., & Isozaki, Y. (2006) · Nature · doi:10.1038/nature04584 · Cited by 572 · see citing works
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Global distribution of microbial abundance and biomass in subseafloor sediment
Kallmeyer, J., Pockalny, R., Adhikari, R. R., Smith, D. C., & D’Hondt, S. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1203849109 · Cited by 956 · see citing works
Ecological Aspects of the Distribution of Different Autotrophic CO <sub>2</sub> Fixation Pathways
Berg, I. A. (2011) · Applied and Environmental Microbiology · doi:10.1128/aem.02473-10 · Cited by 821 · see citing works
Adaptations of archaeal and bacterial membranes to variations in temperature, pH and pressure
Siliakus, M. F., van der Oost, J., & Kengen, S. W. M. (2017) · Extremophiles · doi:10.1007/s00792-017-0939-x · Cited by 450 · see citing works
Serpentinization, carbon, and deep life
Schrenk, M. O., Brazelton, W. J., & Lang, S. Q. (2013) · Reviews in Mineralogy and Geochemistry · doi:10.2138/rmg.2013.75.18 · Cited by 470 · see citing works
The Hadean-Archaean Environment
Sleep, N. H. (2010) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a002527 · Cited by 228 · see citing works
Serpentinite and the dawn of life
Sleep, N. H., Bird, D. K., & Pope, E. C. (2011) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2011.0129 · Cited by 211 · see citing works
Domagal-Goldman, S. D., Wright, K. E., Domagal-Goldman, S. D., Wright, K. E., Adamala, K., Arina de la Rubia, L., Bond, J., Dartnell, L. R., Goldman, A. D., Lynch, K., et al. (2016) · Astrobiology · doi:10.1089/ast.2015.1460 · Cited by 136 · see citing works
“For example, high-pressure environments are often associated with high temperatures, such as in submarine hydrothermal vents or the deep continental subsurface (e.g., Takai et al., 2008), and low pH often causes an excess of heavy metals (e.g., Robbins et al., 2000).”
Sulfur-33 constraints on the origin of secondary pyrite in altered oceanic basement
Ono, S., Keller, N. S., Rouxel, O., & Alt, J. C. (2012) · Geochimica et Cosmochimica Acta · doi:10.1016/j.gca.2012.04.016 · Cited by 101 · see citing works
Does aspartic acid racemization constrain the depth limit of the subsurface biosphere?
Onstott, T. C., Magnabosco, C., Aubrey, A. D., Burton, A. S., Dworkin, J. P., Elsila, J. E., Grunsfeld, S., Cao, B. H., Hein, J. E., Glavin, D. P., et al. (2014) · Geobiology · doi:10.1111/gbi.12069 · Cited by 67 · see citing works
Schwander, L., Brabender, M., Mrnjavac, N., Wimmer, J. L. E., Preiner, M., & Martin, W. F. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1257597 · Cited by 65 · see citing works
Bioenergetic constraints on the origin of autotrophic metabolism
Boyd, E. S., Amenabar, M. J., Poudel, S., & Templeton, A. S. (2020) · Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences · doi:10.1098/rsta.2019.0151 · Cited by 46 · see citing works
Holdsworth, C. M., John, C. M., Snæbjörnsdóttir, S. Ó., Johnson, G., Sigfússon, B., Leslie, R., Haszeldine, R. S., & Gilfillan, S. M. V. (2024) · Applied Geochemistry · doi:10.1016/j.apgeochem.2024.105925 · Cited by 32 · see citing works
Termination and hydration of forsteritic olivine (0 1 0) surface
Yan, H., Park, C., Ahn, G., Hong, S., Keane, D. T., Kenney-Benson, C., Chow, P., Xiao, Y., & Shen, G. (2014) · Geochimica et Cosmochimica Acta · doi:10.1016/j.gca.2014.09.005 · Cited by 16 · see citing works
Watanabe, H., Yahagi, T., Nagai, Y., Seo, M., Kojima, S., Ishibashi, J., Yamamoto, H., Fujikura, K., Mitarai, S., & Toyofuku, T. (2016) · Marine Ecology · doi:10.1111/maec.12318 · Cited by 11 · see citing works
- Authors
- Takai, K., Nakamura, K., Toki, T., Tsunogai, U., Miyazaki, M., Miyazaki, J., Hirayama, H., Nakagawa, S., Nunoura, T., & Horikoshi, K.
- Affiliations
- Japan Agency for Marine-Earth Science and Technology (JP)
- University of the Ryukyus (JP)
- Hokkaido University (JP)
- *Subground Animalcule Retrieval Program and
- ORCID
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2008-08-05
- Volume
- 105
- Issue
- 31
- Pages
- 10949-10954
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC2490668
- OpenAlex
- W1983384197
- Cited by
- 848
- References
- 1
- Citations by year
- 2026: 53 · 2025: 49 · 2024: 57 · 2023: 54 · 2022: 48 · 2021: 66 · 2020: 63 · 2019: 55 · 2018: 62 · 2017: 48 · 2016: 44 · 2015: 32 · 2014: 46 · 2013: 48 · 2012: 36
- FWCI
- 20.69
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Japan Society for the Promotion of Science (18684027)
- Topics
- Physical Sciences › Environmental Science › Environmental Chemistry › Methane Hydrates and Related Phenomena
- Physical Sciences › Engineering › Building and Construction › Anaerobic Digestion and Biogas Production
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial metabolism and enzyme function
- Keywords
- Methanopyrus kandleri, piezophiles, cell proliferation, methane production, carbon isotope fractionation, kinetic isotope effects, chemolithoautotrophic bacteria, hydrogenotrophic methanogenesis, high-temperature growth
- MeSH terms
- Base Sequence, Carbon Isotopes, Chemical Fractionation, Kinetics, Methane, Molecular Sequence Data, Pressure, Temperature, Thermodynamics, Survival Analysis, Cell Culture Techniques, Euryarchaeota
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