Cited by 288Chromosomal and Genetic VariationsGenomic variations and chromosomal abnormalitiesGenome Rearrangement Algorithms

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Molecular paleontology of transposable elements in the Drosophila melanogaster genome

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Kapitonov, Vladimir V., Jurka, Jerzy·2003·Proceedings of the National Academy of Sciences

DOI 10.1073/pnas.0732024100PMC PMC164487

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Abstract

We report here a superfamily of “cut and paste” DNA transposons called Transib . These transposons populate the Drosophila melanogaster and Anopheles gambiae genomes, use a transposase that is not similar to any known proteins, and are characterized by 5-bp target site duplications. We found that the fly genome, which was thought to be colonized by the P element <100 years ago, harbors ≈5 million year (Myr)-old fossils of ProtoP , an ancient ancestor of the P element. We also show that Hoppel , a previously reported transposable element (TE), is a nonautonomous derivate of ProtoP . We found that the “rolling-circle” Helitron transposons identified previously in plants and worms populate also insect genomes. Our results indicate that Helitron s were horizontally transferred into the fly or/and mosquito genomes. We have also identified a most abundant TE in the fly genome, DNAREP1 _ DM , which is an ≈10-Myr-old footprint of a Penelope -like retrotransposon. We estimated that TEs are three times more abundant than reported previously, making up ≈22% of the whole genome. The chromosomal and age distributions of TEs in D. melanogaster are very similar to those in Arabidopsis thaliana . Both genomes contain only relatively young TEs (<20 Myr old), constituting a main component of paracentromeric regions.

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Zhang, F. (2013) · eScholarship@UMassChan · doi:10.13028/m2gs3j
Latent variable models in statistical genetics
Oldmeadow, C. J. (2009)

Authors: Kapitonov, V. V., & Jurka, J.
Affiliations: Genetic Information Research Institute (US)
University of Arizona (US)
Venue: Proceedings of the National Academy of Sciences
Publisher: National Academy of Sciences
Published: 2003-05-12
Volume: 100
Issue: 11
Pages: 6569-6574
ISSN: 0027-8424 (ISSN-L)
1091-6490
DOI: 10.1073/pnas.0732024100
PMC: PMC164487
OpenAlex: W2070797653
Cited by: 288
References: 51
Citations by year: 2026: 6 · 2025: 8 · 2024: 12 · 2023: 10 · 2022: 9 · 2021: 10 · 2020: 7 · 2019: 8 · 2018: 6 · 2017: 9 · 2016: 7 · 2015: 9 · 2014: 15 · 2013: 12 · 2012: 12
FWCI: 23.19
Type: journal article
Language: en
Open access: green
www.ncbi.nlm.nih.gov
Locations: Proceedings of the National Academy of Sciences (publishedVersion)
PubMed Central (publishedVersion)
PubMed (publishedVersion)
Funders: National Institutes of Health
U.S. National Library of Medicine (P41LM006252, 2 P41 LM 06252-04A1)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Chromosomal and Genetic Variations
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomic variations and chromosomal abnormalities
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genome Rearrangement Algorithms
Keywords: transposable elements, DNA transposons, Drosophila melanogaster, Anopheles gambiae, P element, Helitrons, horizontal transfer, transposon distribution, transposase
MeSH terms: Amino Acid Sequence, Animals, DNA Transposable Elements, Drosophila melanogaster, Molecular Sequence Data, Paleontology, Phylogeny, Genome, Sequence Homology, Amino Acid, Evolution, Molecular

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Molecular paleontology of transposable elements in the Drosophila melanogaster genome

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