The DOI matches its Crossref record; 62 of the 63 references it cites were found in a registry or an index.
Opposing mechanisms involving RNA and lipids regulate HIV-1 Gag membrane binding through the highly basic region of the matrix domain
Open accessAbstract
Membrane binding of Gag, a crucial step in HIV-1 assembly, is facilitated by bipartite signals within the matrix (MA) domain: N-terminal myristoyl moiety and the highly basic region (HBR). We and others have shown that Gag interacts with a plasma-membrane-specific acidic phospholipid, phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P(2)], via the HBR, and that this interaction is important for efficient membrane binding and plasma membrane targeting of Gag. Generally, in protein-PI(4,5)P(2) interactions, basic residues promote the interaction as docking sites for the acidic headgroup of the lipid. In this study, toward better understanding of the Gag-PI(4,5)P(2) interaction, we sought to determine the roles played by all of the basic residues in the HBR. We identified three basic residues promoting PI(4,5)P(2)-dependent Gag-membrane binding. Unexpectedly, two other HBR residues, Lys25 and Lys26, suppress membrane binding in the absence of PI(4,5)P(2) and prevent promiscuous intracellular localization of Gag. This inhibition of nonspecific membrane binding is likely through suppression of myristate-dependent hydrophobic interaction because mutating Lys25 and Lys26 enhances binding of Gag with neutral-charged liposomes. These residues were reported to bind RNA. Importantly, we found that RNA also negatively regulates Gag membrane binding. In the absence but not presence of PI(4,5)P(2), RNA bound to MA HBR abolishes Gag-liposome binding. Altogether, these data indicate that the HBR is unique among basic phosphoinositide-binding domains, because it integrates three regulatory components, PI(4,5)P(2), myristate, and RNA, to ensure plasma membrane specificity for particle assembly.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“Using in vitro liposome-binding assays, it was initially reported that RNA binding to MA prevents Gag binding to non-PI(4,5)P 2 membrane lipids (78,79)”
From Role of host tRNAs and aminoacyl-tRNA synthetases in retroviral replication (2019) · cites this paper as [78]
Citations
Cites
Adachi, A., Gendelman, H. E., Koenig, S., Folks, T. M., Willey, R. L., Rabson, A. B., & Martín, M. Á. (1986) · Journal of Virology · doi:10.1128/jvi.59.2.284-291.1986 · Cited by 2,805
Nagai, T., Ibata, K., Park, E. S., Kubota, M., Mikoshiba, K., & Miyawaki, A. (2002) · Nature Biotechnology · doi:10.1038/nbt0102-87 · Cited by 2,769
Membrane recognition by phospholipid-binding domains
Lemmon, M. A. (2008) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2328 · Cited by 1,419
Göttlinger, H. G., Sodroski, J. G., & Haseltine, W. A. (1989) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.86.15.5781 · Cited by 841
HIV-1 Gag proteins: diverse functions in the virus life cycle
Freed, E. O. (1998) · Virology · doi:10.1006/viro.1998.9398 · Cited by 717
Myristoylation-dependent replication and assembly of human immunodeficiency virus 1.
Bryant, M. L., & Ratner, L. (1990) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.87.2.523 · Cited by 624
Specific and high-affinity binding of inositol phosphates to an isolated pleckstrin homology domain
Lemmon, M. A., Ferguson, K. M., O'Brien, R., Sigler, P. B., & Schlessinger, J. (1995) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.92.23.10472 · Cited by 566
Phosphatidylinositol (4,5) bisphosphate regulates HIV-1 Gag targeting to the plasma membrane
Ono, A., Ablan, S. D., Lockett, S. J., Nagashima, K., & Freed, E. O. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0405596101 · Cited by 553
Self-citationStructural basis for targeting HIV-1 Gag proteins to the plasma membrane for virus assembly
Saad, J. S., Miller, J., Tai, J., Kim, A., Ghanam, R. H., & Summers, M. F. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0602818103 · Cited by 545
Zhou, W., Parent, L. J., Wills, J. W., & Resh, M. D. (1994) · Journal of Virology · doi:10.1128/jvi.68.4.2556-2569.1994 · Cited by 529
Flagged first, then by citations
1 of the 63 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Items 201–229 of 229
Cullen, B. R. (2014) · Cell · doi:10.1016/j.cell.2014.11.008
Llewellyn, G. N. (2012) · Deep Blue (University of Michigan)
Compounds Derived from Birch Trees that Inhibit HIV-1 Replication
Dorr, C. R. (2011) · University of Minnesota Digital Conservancy (University of Minnesota)
Membrane Binding of Retroviral Gag Proteins
Ono, A. (2014) · Uirusu · doi:10.2222/jsv.64.155
Self-citationOno, A., Chukkapalli, V., Inlora, J., & Todd, G. C. (2014)
Self-citationBroad-spectrum host-acting antivirals: identification and characterization of anti-HIV drugs
Soriano, F., & Eric, E. (2015) · Repositori digital de la UPF (Universitat Pompeu Fabra)
The Roles of Lipid and RNA in Regulating Retroviral Gag Membrane Binding and Targeting.
Inlora, J. (2015) · Deep Blue (University of Michigan)
Heilmann, I. (2013) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.717988250.793472526
Socas, L. B. P., & Ambroggio, E. E. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.08.25.505363
Mendoza-Espinosa, P., Quintana-H, J., Armas-Pérez, J. C., Guzmán, O., & Chapela, G. A. (2024) · Molecular Physics · doi:10.1080/00268976.2024.2366006
Analyse du rôle des PIP2 dans l'initiation de la signalisation TCR et l'activation lymphocytaire
Benmansour, N. C. (2014) · theses.fr (ABES) · doi:10.70675/79c2164dz3b50z4377zb025zd81d44d0b049
The intracellular trafficking of HIV-1 Gag protein and the role of its NCp7 domain
Meshri, S. E. E. (2015) · theses.fr (ABES) · doi:10.70675/e50e7319z2bebz46d8z8039zf29efb7c4e4b
Role of I-BAR proteins and membrane curvature in HIV-1 assembly and release
Inamdar, K. (2020) · theses.fr (ABES) · doi:10.70675/ddf72546zc74dz403ezba12za21d0d4271f7
Rôle des protéines LC3/GABARAP dans l'assemblage du VIH-1
Palaric, M. (2024) · theses.fr (ABES) · doi:10.70675/36fce390z878bz4402zadafza843c7def083
Impact de la modification epitranscriptomique m6A sur la structure de l'ARN du VIH-1
Martynov, V. (2024) · theses.fr (ABES) · doi:10.70675/3e95897azed88z44d2z8b99zb09c7d65e782
Self-Assembling Enveloped Virus-Mimicking Particle for Extrahepatic Targeting mRNA Delivery
Yu, R., Huang, Y., Shi, W., Tao, Q., Shi, K., Zhang, C., Li, P., Zhang, J., Chen, L., Nie, X., et al. (2026) · ACS Nano · doi:10.1021/acsnano.5c21254
Meng, S., Pham, B., Hines, S. E., Angert, I., Piotter, D. W., Mueller, J. D., Saad, J. S., Zhang, W., & Mansky, L. M. (2026) · Journal of Molecular Biology · doi:10.1016/j.jmb.2026.169826
Mechanisms of HIV-1 assembly, release and maturation
Kleinpeter, A. B., & Freed, E. O. (2026) · Nature Reviews Microbiology · doi:10.1038/s41579-026-01327-6 · Cited by 2
A Historical Account of Retroviral Assembly and Budding.
Carter, C. A. (2026) · Annual Review of Virology · doi:10.1146/annurev-virology-100424-011327
Mudgal, R. K., Thornhill, D., Chou, K.-N., Qureshi, H., & Ono, A. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.10.16.759769
Self-citationChukkapalli, V. (2011) · Deep Blue (University of Michigan)
Self-citation
Metadata
- Authors
- Chukkapalli, V., Oh, S. J., & Ono, A.
- Affiliations
- University of Michigan (US)
- Corresponding author
- Ono, Akira
- ORCID
- Ono, Akira
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2010-01-04
- Volume
- 107
- Issue
- 4
- Pages
- 1600-1605
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC2824378
- OpenAlex
- W2017522157
- Cited by
- 229
- References
- 63
- Citations by year
- 2026: 7 · 2025: 4 · 2024: 12 · 2023: 6 · 2022: 12 · 2021: 13 · 2020: 15 · 2019: 11 · 2018: 13 · 2017: 7 · 2016: 25 · 2015: 22 · 2014: 25 · 2013: 13 · 2012: 12
- FWCI
- 6.42
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health
- National Heart, Lung, and Blood Institute
- National Institute of Allergy and Infectious Diseases (R01AI071727)
- Topics
- Life Sciences › Immunology and Microbiology › Virology › HIV Research and Treatment
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Lipid Membrane Structure and Behavior
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
- Keywords
- HIV-1 Gag, matrix domain, membrane binding, phosphatidylinositol 4,5-bisphosphate, myristoylation, RNA binding, plasma membrane targeting, viral assembly, lysine residues, liposome binding
- MeSH terms
- Cell Membrane, HeLa Cells, Humans, RNA, Viral, HIV-1, Protein Structure, Tertiary, Phosphatidylinositol 4,5-Diphosphate, Virus Internalization, gag Gene Products, Human Immunodeficiency Virus, Hydrophobic and Hydrophilic Interactions
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review