The DOI matches its Crossref record; 37 of the 37 references it cites were found in a registry or an index.
Liquid–vapor oscillations of water in hydrophobic nanopores
Open accessAbstract
Water plays a key role in biological membrane transport. In ion channels and water-conducting pores (aquaporins), one-dimensional confinement in conjunction with strong surface effects changes the physical behavior of water. In molecular dynamics simulations of water in short (0.8 nm) hydrophobic pores the water density in the pore fluctuates on a nanosecond time scale. In long simulations (460 ns in total) at pore radii ranging from 0.35 to 1.0 nm we quantify the kinetics of oscillations between a liquid-filled and a vapor-filled pore. This behavior can be explained as capillary evaporation alternating with capillary condensation, driven by pressure fluctuations in the water outside the pore. The free-energy difference between the two states depends linearly on the radius. The free-energy landscape shows how a metastable liquid state gradually develops with increasing radius. For radii > ≈0.55 nm it becomes the globally stable state and the vapor state vanishes. One-dimensional confinement affects the dynamic behavior of the water molecules and increases the self diffusion by a factor of 2–3 compared with bulk water. Permeabilities for the narrow pores are of the same order of magnitude as for biological water pores. Water flow is not continuous but occurs in bursts. Our results suggest that simulations aimed at collective phenomena such as hydrophobic effects may require simulation times >50 ns. For water in confined geometries, it is not possible to extrapolate from bulk or short time behavior to longer time scales.
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Cites
Molecular dynamics with coupling to an external bath
Berendsen, H. J. C., Postma, J. P. M., van Gunsteren, W. F., DiNola, A., & Haak, J. R. (1984) · The Journal of Chemical Physics · doi:10.1063/1.448118 · Cited by 30,700
Particle mesh Ewald: An N ⋅log( N ) method for Ewald sums in large systems
Darden, T., York, D., & Pedersen, L. (1993) · The Journal of Chemical Physics · doi:10.1063/1.464397 · Cited by 30,546
GROMACS 3.0: a package for molecular simulation and trajectory analysis
Lindahl, E., Hess, B., & van der Spoel, D. (2001) · Journal of Molecular Modeling · doi:10.1007/s008940100045 · Cited by 6,977
The Structure of the Potassium Channel: Molecular Basis of K + Conduction and Selectivity
Doyle, D. A., Cabral, J. M., Pfuetzner, R. A., Kuo, A., Gulbis, J. M., Cohen, S. L., Chait, B. T., & MacKinnon, R. (1998) · Science · doi:10.1126/science.280.5360.69 · Cited by 6,807
Ion Channels/Excitable Membranes
(2011) · SpringerReference · doi:10.1007/springerreference_33998 · Cited by 4,034
Water conduction through the hydrophobic channel of a carbon nanotube
Hummer, G., Rasaiah, J. C., & Noworyta, J. P. (2001) · Nature · doi:10.1038/35102535 · Cited by 3,557
Molecular theory of capillarity
Rowlinson, J. S., & Widom, B. (1982) · Cited by 2,854
Molecular Theory of Capillarity
Rickayzen, G. (1983) · Physics Bulletin · doi:10.1088/0031-9112/34/10/030 · Cited by 2,642
(1995) · Springer eBooks · doi:10.1007/978-1-4419-1229-9 · Cited by 2,526
Phase separation in confined systems
Gelb, L. D., Gubbins, K. E., Radhakrishnan, R., & Sliwinska-Bartkowiak, M. (1999) · Reports on Progress in Physics · doi:10.1088/0034-4885/62/12/201 · Cited by 1,568
X-ray structure of a ClC chloride channel at 3.0 Å reveals the molecular basis of anion selectivity
Dutzler, R., Campbell, E. B., Cadene, M., Chait, B. T., & MacKinnon, R. (2002) · Nature · doi:10.1038/415287a · Cited by 1,446
Climatic Impact of Tropical Lowland Deforestation on Nearby Montane Cloud Forests
Lawton, R. O., Nair, U. S., Pielke, R. A., & Welch, R. M. (2001) · Science · doi:10.1126/science.1062459 · Cited by 1,169
Structural basis of water-specific transport through the AQP1 water channel
Sui, H., Han, B.-G., Lee, J. K., Walian, P., & Jap, B. K. (2001) · Nature · doi:10.1038/414872a · Cited by 1,166
ION CHANNELS IN EXCITABLE MEMBRANES
Hucho, F. (1978) · Transport by proteins · doi:10.1515/9783111710013-017 · Cited by 1,136
Structure of a Glycerol-Conducting Channel and the Basis for Its Selectivity
Fu, D., Libson, A., Miercke, L. J. W., Weitzman, C., Nollert, P., Krucinski, J., & Stroud, R. M. (2000) · Science · doi:10.1126/science.290.5491.481 · Cited by 1,000
Structure of the MscL Homolog from Mycobacterium tuberculosis : A Gated Mechanosensitive Ion Channel
Chang, G., Spencer, R. H., Lee, A. T., Barclay, M. T., & Rees, D. C. (1998) · Science · doi:10.1126/science.282.5397.2220 · Cited by 990
Control of the Selectivity of the Aquaporin Water Channel Family by Global Orientational Tuning
Tajkhorshid, E., Nollert, P., Jensen, M. Ø., Miercke, L. J. W., O'Connell, J., Stroud, R. M., & Schulten, K. (2002) · Science · doi:10.1126/science.1067778 · Cited by 914
Water Permeation Across Biological Membranes: Mechanism and Dynamics of Aquaporin-1 and GlpF
de Groot, B. L., & Grubmüller, H. (2001) · Science · doi:10.1126/science.1066115 · Cited by 900
A consistent empirical potential for water–protein interactions
Hermans, J., Berendsen, H. J. C., Van Gunsteren, W. F., & Postma, J. P. M. (1984) · Biopolymers · doi:10.1002/bip.360230807 · Cited by 773
Fluids adsorbed in narrow pores: phase equilibria and structure
Evans, R. (1990) · Journal of Physics: Condensed Matter · doi:10.1088/0953-8984/2/46/001 · Cited by 653
Crystal Structure of Escherichia coli MscS, a Voltage-Modulated and Mechanosensitive Channel
Bass, R. B., Strop, P., Barclay, M., & Rees, D. C. (2002) · Science · doi:10.1126/science.1077945 · Cited by 590
Confinement effects on freezing and melting
Christenson, H. K. (2001) · Journal of Physics: Condensed Matter · doi:10.1088/0953-8984/13/11/201 · Cited by 567
An information theory model of hydrophobic interactions.
Hummer, G., Garde, S., García, A. E., Pohorille, A., & Pratt, L. R. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.17.8951 · Cited by 562
Finite-size effects at first-order transitions
Privman, V., & Fisher, M. E. (1983) · Journal of Statistical Physics · doi:10.1007/bf01009803 · Cited by 458
Water movement through lipid bilayers, pores, and plasma membranes : theory and reality
Finkelstein, A. (1987) · Cited by 431
Single-File Transport of Water Molecules through a Carbon Nanotube
Berezhkovskii, A., & Hummer, G. (2002) · Physical Review Letters · doi:10.1103/physrevlett.89.064503 · Cited by 402
A Hydrophobic Gating Mechanism for Nanopores
Beckstein, O., Biggin, P. C., & Sansom, M. S. P. (2001) · The Journal of Physical Chemistry B · doi:10.1021/jp012233y · Cited by 289
Self-citationStructure and Function of Water Channels
Fujiyoshi, Y., Mitsuoka, K., de Groot, B. L., Philippsen, A., Grubmüller, H., Agre, P., & Engel, A. (2002) · Current Opinion in Structural Biology · doi:10.1016/s0959-440x(02)00355-x · Cited by 275
Mobility and solvation of ions in channels
Lynden-Bell, R. M., & Rasaiah, J. C. (1996) · The Journal of Chemical Physics · doi:10.1063/1.472757 · Cited by 219
Intermittent Permeation of Cylindrical Nanopores by Water
Allen, R. J., Melchionna, S., & Hansen, J.-P. (2002) · Physical Review Letters · doi:10.1103/physrevlett.89.175502 · Cited by 125
Yang, B., Hoek, A. N. V., & Verkman, A. S. (1997) · Biochemistry · doi:10.1021/bi970231r · Cited by 108
Unwin, N. (2000) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2000.0737 · Cited by 105
Pohl, P., Saparov, S. M., Borgnia, M. J., et al. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.161299398 · Cited by 103
de Groot, B. L., Tieleman, D. P., Pohl, P., & Grubmüller, H. (2002) · Biophysical Journal · doi:10.1016/s0006-3495(02)75634-8 · Cited by 99
Water confined in cylindrical micropores
Giaya, A., & Thompson, R. W. (2002) · The Journal of Chemical Physics · doi:10.1063/1.1494419 · Cited by 80
Solvent Drag across Gramicidin Channels Demonstrated by Microelectrodes
Pohl, P., & Saparov, S. M. (2000) · Biophysical Journal · doi:10.1016/s0006-3495(00)76786-5 · Cited by 45
Water in nanopores in equilibrium with a bulk reservoir — Gibbs ensemble Monte Carlo simulations
Brovchenko, I. V., & Geiger, A. (2002) · Journal of Molecular Liquids · doi:10.1016/s0167-7322(02)00003-x · Cited by 38
Cited by
Designing Carbon Nanotube Membranes for Efficient Water Desalination
Corry, B. (2008) · The Journal of Physical Chemistry B · doi:10.1021/jp709845u · Cited by 1,017
Computer simulation study of fullerene translocation through lipid membranes
Wong-Ekkabut, J., Baoukina, S., Triampo, W., Tang, I.-M., Tieleman, D. P., & Monticelli, L. (2008) · Nature Nanotechnology · doi:10.1038/nnano.2008.130 · Cited by 506
Giovambattista, N., Rossky, P. J., & Debenedetti, P. G. (2006) · Physical Review E · doi:10.1103/physreve.73.041604 · Cited by 358
Electrostatic gating of a nanometer water channel
Li, J., Gong, X., Lu, H., Li, D., Fang, H., & Zhou, R. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0604541104 · Cited by 314
Principles of conduction and hydrophobic gating in K + channels
Jensen, M. Ø., Borhani, D. W., Lindorff-Larsen, K., Maragakis, P., Jogini, V., Eastwood, M. P., Dror, R. O., & Shaw, D. E. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0911691107 · Cited by 311
Metadata
- Authors
- Beckstein, O., & Sansom, M. S. P.
- Venue
- Proceedings of the National Academy of Sciences
- Published
- 2003-05-09
- Volume
- 100
- Issue
- 12
- Pages
- 7063-7068
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- OpenAlex
- W2104129019
- Cited by
- 440
- References
- 37
- FWCI
- 19.98
- Type
- journal article
- Language
- en
- Open access
- green
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