The DOI matches its Crossref record; 54 of the 54 references it cites were found in a registry or an index.
3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture
Open accessAbstract
Significance: Improving the efficiency of root systems should result in crop varieties with better yields, requiring fewer chemical inputs, and that can grow in harsher environments. Little is known about the genetic factors that condition root growth because of roots’ complex shapes, the opacity of soil, and environmental influences. We designed a 3D root imaging and analysis platform and used it to identify regions of the rice genome that control several different aspects of root system growth. The results of this study should inform future efforts to enhance root architecture for agricultural benefit.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Introduction to Quantitative Genetics.
Edwards, A. W. F., & Falconer, D. S. (1982) · Biometrics · doi:10.2307/2529912 · Cited by 21,447
Breeding Technologies to Increase Crop Production in a Changing World
Tester, M., & Langridge, P. (2010) · Science · doi:10.1126/science.1183700 · Cited by 2,322
Root Architecture and Plant Productivity
Lynch, J. (1995) · Plant Physiology · doi:10.1104/pp.109.1.7 · Cited by 1,905
Phenomics – technologies to relieve the phenotyping bottleneck
Furbank, R. T., & Tester, M. (2011) · Trends in Plant Science · doi:10.1016/j.tplants.2011.09.005 · Cited by 1,675
Houle, D., Govindaraju, D. R., & Omholt, S. (2010) · Nature Reviews Genetics · doi:10.1038/nrg2897 · Cited by 1,279
Root Phenes for Enhanced Soil Exploration and Phosphorus Acquisition: Tools for Future Crops
Lynch, J. P. (2011) · Plant Physiology · doi:10.1104/pp.111.175414 · Cited by 1,052
Wheat grain yield on saline soils is improved by an ancestral Na+ transporter gene
Munns, R., James, R. A., Xu, B., Athman, A., Conn, S. J., Jordans, C., Byrt, C. S., Hare, R. A., Tyerman, S. D., Tester, M., et al. (2012) · Nature Biotechnology · doi:10.1038/nbt.2120 · Cited by 850
Plant root growth, architecture and function
Hodge, A., Berta, G., Doussan, C., Merchan, F., & Crespi, M. (2009) · Plant and Soil · doi:10.1007/s11104-009-9929-9 · Cited by 799
The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency
Gamuyao, R., Chin, J. H., Pariasca-Tanaka, J., Pesaresi, P., Catausan, S., Dalid, C., Slamet-Loedin, I., Tecson-Mendoza, E. M., Wissuwa, M., & Heuer, S. (2012) · Nature · doi:10.1038/nature11346 · Cited by 784
Magalhaes, J. V., Liu, J., Guimarães, C. T., Lana, U. G. P., Alves, V. M. C., Wang, Y.-H., Schaffert, R. E., Hoekenga, O. A., Piñeros, M. A., Shaff, J. E., et al. (2007) · Nature Genetics · doi:10.1038/ng2074 · Cited by 782
Cited by
Evaluating physiological responses of plants to salinity stress
Negrão, S., Schmöckel, S. M., & Tester, M. (2017) · Annals of Botany · doi:10.1093/aob/mcw191 · Cited by 1,196
Machine Learning for High-Throughput Stress Phenotyping in Plants
Singh, A., Ganapathysubramanian, B., Singh, A. K., & Sarkar, S. (2016) · Trends in Plant Science · doi:10.1016/j.tplants.2015.10.015 · Cited by 1,109
Yang, W., Feng, H., Zhang, X., Zhang, J., Doonan, J. H., Batchelor, W. D., Xiong, L., & Yan, J. (2020) · Molecular Plant · doi:10.1016/j.molp.2020.01.008 · Cited by 961
Adventitious Roots and Lateral Roots: Similarities and Differences
Bellini, C., Pacurar, D. I., & Perrone, I. (2014) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-050213-035645 · Cited by 624
Uncovering the hidden half of plants using new advances in root phenotyping
Atkinson, J. A., Pound, M. P., Bennett, M. J., & Wells, D. M. (2019) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2018.06.002 · Cited by 406
Metadata
- Authors
- Topp, C. N., Iyer-Pascuzzi, A. S., Anderson, J. T., Lee, C.-R., Zurek, P. R., Symonova, O., Zheng, Y., Bucksch, A., Mileyko, Y., Galkovskyi, T., Moore, B. T., Harer, J., Edelsbrunner, H., Mitchell-Olds, T., Weitz, J. S., & Benfey, P. N.
- Venue
- Proceedings of the National Academy of Sciences
- Published
- 2013-04-11
- Volume
- 110
- Issue
- 18
- Pages
- E1695-704
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- OpenAlex
- W1971764754
- Cited by
- 292
- References
- 54
- FWCI
- 17.80
- Type
- journal article
- Language
- en
- Open access
- green
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: 3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture. https://app.cochat.ai/papers/10.1073/pnas.1304354110
- The paper
- Topp, C. N., Iyer-Pascuzzi, A. S., Anderson, J. T., Lee, C.-R., Zurek, P. R., Symonova, O., Zheng, Y., Bucksch, A., Mileyko, Y., Galkovskyi, T., Moore, B. T., Harer, J., Edelsbrunner, H., Mitchell-Olds, T., Weitz, J. S., & Benfey, P. N. (2013). 3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1304354110
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.