The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.
Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics
Open accessAbstract
Significance: Ecological and evolutionary investigations require accurate and high-resolution biodiversity information. Conventional morphological approaches to identifying species in species-rich tropical ecosystems are often unavailable or incapable of timely, cost-effective identification. We show that next-generation sequencing (NGS) of cytochrome c oxidase subunit I (COI) DNA barcodes can accurately detect 83.5% of individually sequenced species (corresponding to 91% of individuals) in a bulk sample of terrestrial arthropods from a Costa Rican species-rich site. Additionally, the 16S and 18S ribosomal DNA gene regions obtained also provide an assessment of the bacteria and protozoa in the bulk sample. This metasystematic approach provides the initial infrastructure for a next generation of biodiversity assessment and environmental monitoring. It can lead to more effective understanding, appreciation, and management of complex ecosystems.
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Cites
Cutadapt removes adapter sequences from high-throughput sequencing reads
Martin, M. (2011) · EMBnet.journal · doi:10.14806/ej.17.1.200 · Cited by 33,889
Averting biodiversity collapse in tropical forest protected areas
Laurance, W. F., Carolina Useche, D., Rendeiro, J., Kalka, M., Bradshaw, C. J. A., Sloan, S. P., Laurance, S. G., Campbell, M., Abernethy, K., Alvarez, P., et al. (2012) · Nature · doi:10.1038/nature11318 · Cited by 1,213
Self-citationHajibabaei, M., Shokralla, S., Zhou, X., Singer, G. A. C., & Baird, D. J. (2011) · PLoS ONE · doi:10.1371/journal.pone.0017497 · Cited by 584
Self-citationCarew, M. E., Pettigrove, V. J., Metzeling, L., & Hoffmann, A. A. (2013) · Frontiers in Zoology · doi:10.1186/1742-9994-10-45 · Cited by 243
Cited by
Elbrecht, V., & Leese, F. (2015) · PLOS ONE · doi:10.1371/journal.pone.0130324 · Cited by 765
Elbrecht, V., Vamos, E. E., Meissner, K., Aroviita, J., & Leese, F. (2017) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.12789 · Cited by 385
Metadata
- Authors
- Gibson, J., Shokralla, S., Porter, T. M., King, I., van Konynenburg, S., Janzen, D. H., Hallwachs, W., & Hajibabaei, M.
- Venue
- Proceedings of the National Academy of Sciences
- Published
- 2014-05-07
- Volume
- 111
- Issue
- 22
- Pages
- 8007-8012
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- OpenAlex
- W2013445830
- Cited by
- 296
- References
- 4
- FWCI
- 24.33
- Type
- journal article
- Language
- en
- Open access
- green
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- The paper
- Gibson, J., Shokralla, S., Porter, T. M., King, I., van Konynenburg, S., Janzen, D. H., Hallwachs, W., & Hajibabaei, M. (2014). Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1406468111
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