The DOI matches its Crossref record; 50 of the 50 references it cites were found in a registry or an index.
Synthesis of phylogeny and taxonomy into a comprehensive tree of life
Open accessAbstract
Significance: Scientists have used gene sequences and morphological data to construct tens of thousands of evolutionary trees that describe the evolutionary history of animals, plants, and microbes. This study is the first, to our knowledge, to apply an efficient and automated process for assembling published trees into a complete tree of life. This tree and the underlying data are available to browse and download from the Internet, facilitating subsequent analyses that require evolutionary trees. The tree can be easily updated with newly published data. Our analysis of coverage not only reveals gaps in sampling and naming biodiversity but also further demonstrates that most published phylogenies are not available in digital formats that can be summarized into a tree of life.
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Cites
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
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Self-citationBroad phylogenomic sampling improves resolution of the animal tree of life
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Self-citationPhylogenetic Classification and the Universal Tree
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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
Bouckaert, R., Vaughan, T. G., Barido-Sottani, J., Duchêne, S., Fourment, M., Gavryushkina, A., Heled, J., Jones, G., Kühnert, D., De Maio, N., et al. (2019) · PLOS Computational Biology · doi:10.1371/journal.pcbi.1006650 · Cited by 4,556
A new view of the tree of life
Hug, L. A., Baker, B. J., Anantharaman, K., Brown, C. T., Probst, A. J., Castelle, C. J., Butterfield, C. N., Hernsdorf, A. W., Amano, Y., Ise, K., et al. (2016) · Nature Microbiology · doi:10.1038/nmicrobiol.2016.48 · Cited by 2,039
How many species of mammals are there?
Burgin, C. J., Colella, J. P., Kahn, P. L., & Upham, N. S. (2018) · Journal of Mammalogy · doi:10.1093/jmammal/gyx147 · Cited by 1,168
Earth BioGenome Project: Sequencing life for the future of life
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Self-citationrotl: an R package to interact with the Open Tree of Life data
Michonneau, F., Brown, J. W., & Winter, D. J. (2016) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.12593 · Cited by 478
Metadata
- Authors
- Hinchliff, C. E., Smith, S. A., Allman, J. F., Burleigh, J. G., Chaudhary, R., Coghill, L. M., Crandall, K. A., Deng, J., Drew, B. T., Gazis, R., Gude, K., Hibbett, D. S., Katz, L. A., Laughinghouse, H. D., McTavish, E. J., Midford, P. E., Owen, C. L., Ree, R. H., Rees, J. A., Soltis, D. E., Williams, T., & Cranston, K. A.
- Venue
- Proceedings of the National Academy of Sciences
- Published
- 2015-09-18
- Volume
- 112
- Issue
- 41
- Pages
- 12764-12769
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- OpenAlex
- W2951002538
- Cited by
- 788
- References
- 50
- FWCI
- 26.50
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Hinchliff, C. E., Smith, S. A., Allman, J. F., Burleigh, J. G., Chaudhary, R., Coghill, L. M., Crandall, K. A., Deng, J., Drew, B. T., Gazis, R., Gude, K., Hibbett, D. S., Katz, L. A., Laughinghouse, H. D., McTavish, E. J., Midford, P. E., Owen, C. L., Ree, R. H., Rees, J. A., . . . Cranston, K. A. (2015). Synthesis of phylogeny and taxonomy into a comprehensive tree of life. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1423041112
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
