Cited by 179T-cell and B-cell ImmunologyDown syndrome and intellectual disability researchImmunodeficiency and Autoimmune Disorders

Trisomy 21 dysregulates T cell lineages toward an autoimmunity-prone state associated with interferon hyperactivity

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Araya, Paula, Waugh, Katherine A., Sullivan, Kelly D., Núñez, Nicolás G., Roselli, Emiliano, Smith, Keith P., Granrath, Ross E., Rachubinski, Angela L. +7 more·2019·Proceedings of the National Academy of Sciences

Abstract

Trisomy 21 (T21) causes Down syndrome (DS), a condition characterized by high prevalence of autoimmune disorders. However, the molecular and cellular mechanisms driving this phenotype remain unclear. Building upon our previous finding that T cells from people with DS show increased expression of interferon (IFN)-stimulated genes, we have completed a comprehensive characterization of the peripheral T cell compartment in adults with DS with and without autoimmune conditions. CD8+ T cells from adults with DS are depleted of naïve subsets and enriched for differentiated subsets, express higher levels of markers of activation and senescence (e.g., IFN-γ, Granzyme B, PD-1, KLRG1), and overproduce cytokines tied to autoimmunity (e.g., TNF-α). Conventional CD4+ T cells display increased differentiation, polarization toward the Th1 and Th1/17 states, and overproduction of the autoimmunity-related cytokines IL-17A and IL-22. Plasma cytokine analysis confirms elevation of multiple autoimmunity-related cytokines (e.g., TNF-α, IL17A–D, IL-22) in people with DS, independent of diagnosis of autoimmunity. Although Tregs are more abundant in DS, functional assays show that CD8+ and CD4+ effector T cells with T21 are resistant to Treg-mediated suppression, regardless of Treg karyotype. Transcriptome analysis of white blood cells and T cells reveals strong signatures of T cell differentiation and activation that correlate positively with IFN hyperactivity. Finally, mass cytometry analysis of 8 IFN-inducible phosphoepitopes demonstrates that T cell subsets with T21 show elevated levels of basal IFN signaling and hypersensitivity to IFN-α stimulation. Therefore, these results point to T cell dysregulation associated with IFN hyperactivity as a contributor to autoimmunity in DS.

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  • Both individuals with DS and mouse models of DS experience constitutive hyperactivation of interferon (IFN) signaling with signs of chronic inflammation and immune dysregulation, which could exacerbate the neuroinflammatory response.

    “Notably, both individuals with DS and mouse models of DS experience constitutive hyperactivation of interferon (IFN) signaling with signs of chronic inflammation and immune dysregulation,30,31,32,33,34,35,36,37,38,39,40 that could exacerbate the neuroinflammatory response.”

    From Interferon signaling modulates Down syndrome-associated Alzheimer’s disease pathology in a mouse model (2025) · cites this paper as [34]

    The Abstract and Results report elevated basal IFN signaling, chronic inflammation, and T-cell dysregulation in people with Down syndrome. The paper does not establish the same findings in mouse models of Down syndrome, which are also included in the cited claim. The proposed neuroinflammatory consequence appears after the citations and is not treated as a finding attributed to this source. (LLM, conf=0.87)

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  • People with DS present increased IFN signaling likely driven by triplication of four of the six IFN receptors encoded on HSA21, rather than by massive elevation of IFN ligands, and this has been associated with chronic immune dysregulation.

    “people with DS present an increased IFN signaling likely driven by triplication of four of the six IFN receptors encoded on HSA21,36 rather than by massive elevation of the IFN ligands themselves as seen in interferonopathies,80 and this has been associated with chronic immune dysregulation.”

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  1. [1]de Graaf G., Buckley F., Skotko B. G., Estimation of the number of people with Down syndrome in the United States. Genet. Med. 19, 439– 447 (2017). 27608174
  2. [2]Hasle H., Friedman J. M., Olsen J. H., Rasmussen S.A., Low risk of solid tumors in persons with Down syndrome. Genet. Med. 18, 1151– 1157 (2016). 27031084
  3. [4]Madan V., Williams J., Lear J. T., Dermatological manifestations of Down’s syndrome. Clin. Exp. Dermatol. 31, 623– 629 (2006). 16901300
  4. [5]Mårild K., Down syndrome is associated with elevated risk of celiac disease: A nationwide case-control study. J. Pediatr. 163, 237– 242 (2013). 23399451
  5. [6]Alexander M., Morbidity and medication in a large population of individuals with Down syndrome compared to the general population. Dev. Med. Child Neurol. 58, 246– 254 (2016). 26282180
  6. [7]de Weerd N. A., Nguyen T., The interferons and their receptors–Distribution and regulation. Immunol. Cell Biol. 90, 483– 491 (2012). 22410872 PMC7165917
  7. [8]Chen K., Liu J., Cao X., Regulation of type I interferon signaling in immunity and inflammation: A comprehensive review. J. Autoimmun. 83, 1– 11 (2017). 28330758
  8. [11]Levin S., Thymic deficiency in Down’s syndrome. Pediatrics 63, 80– 87 (1979). 155804
  9. [12]Larocca L. M., Morphological and immunohistochemical study of Down syndrome thymus. Am. J. Med. Genet. Suppl. 7, 225– 230 (1990). 2149952
  10. [13]Bloemers B. L., Decreased thymic output accounts for decreased naive T cell numbers in children with Down syndrome. J. Immunol. 186, 4500– 4507 (2011). 21346234
  11. [14]Roat E., Homeostatic cytokines and expansion of regulatory T cells accompany thymic impairment in children with Down syndrome. Rejuvenation Res. 11, 573– 583 (2008). 18386990
  12. [15]Murphy M., Epstein L. B., Down syndrome (DS) peripheral blood contains phenotypically mature CD3+TCR alpha, beta+ cells but abnormal proportions of TCR alpha, beta+, TCR gamma, delta+, and CD4+ CD45RA+ cells: Evidence for an inefficient release of mature T cells by the DS thymus. Clin. Immunol. Immunopathol. 62, 245– 251 (1992). 1530912
  13. [16]Barrena M. J., Echaniz P., Garcia-Serrano C., Cuadrado E., Imbalance of the CD4+ subpopulations expressing CD45RA and CD29 antigens in the peripheral blood of adults and children with Down syndrome. Scand. J. Immunol. 38, 323– 326 (1993). 7692590
  14. [17]Guazzarotti L., T lymphocyte maturation is impaired in healthy young individuals carrying trisomy 21 (Down syndrome). Am. J. Intellect. Dev. Disabil. 114, 100– 109 (2009). 19391670
  15. [18]Pellegrini F. P., Down syndrome, autoimmunity and T regulatory cells. Clin. Exp. Immunol. 169, 238– 243 (2012). 22861363 PMC3445000
  16. [19]Schoch J., Quantitative, phenotypical, and functional characterization of cellular immunity in children and adolescents with Down syndrome. J. Infect. Dis. 215, 1619– 1628 (2017). 28379413
  17. [20]Cossarizza A., Precocious aging of the immune system in Down syndrome: Alteration of B lymphocytes, T-lymphocyte subsets, and cells with natural killer markers. Am. J. Med. Genet. Suppl. 7, 213– 218 (1990). 2149950
  18. [21]Jakubiuk-Tomaszuk A., Decrease of interleukin (IL)17A gene expression in leucocytes and in the amount of IL-17A protein in CD4+ T cells in children with Down Syndrome. Pharmacol. Rep. 67, 1130– 1134 (2015). 26481531
  19. [23]Lili Y., Global activation of CD8+ cytotoxic T lymphocytes correlates with an impairment in regulatory T cells in patients with generalized vitiligo. PLoS One 7, e37513 (2012). 22649532 PMC3359382
  20. [24]Wehrens E. J., Functional human regulatory T cells fail to control autoimmune inflammation due to PKB/c-akt hyperactivation in effector cells. Blood 118, 3538– 3548 (2011). 21828127
  21. [25]Van Gassen S., FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data. Cytometry A 87, 636– 645 (2015). 25573116
  22. [27]Thome J. J., Spatial map of human T cell compartmentalization and maintenance over decades of life. Cell 159, 814– 828 (2014). 25417158 PMC4243051
  23. [28]Fontenot J. D., Gavin M. A., Rudensky A. Y., Foxp3 programs the development and function of CD4+CD25+ regulatory T cells. Nat. Immunol. 4, 330– 336 (2003). 12612578
  24. [30]Miyara M., Functional delineation and differentiation dynamics of human CD4+ T cells expressing the FoxP3 transcription factor. Immunity 30, 899– 911 (2009). 19464196
  25. [31]Halle S., Halle O., Förster R., Mechanisms and dynamics of T cell-mediated cytotoxicity in vivo. Trends Immunol. 38, 432– 443 (2017). 28499492
  26. [32]Sa Q., Woodward J., Suzuki Y., IL-2 produced by CD8+ immune T cells can augment their IFN-γ production independently from their proliferation in the secondary response to an intracellular pathogen. J. Immunol. 190, 2199– 2207 (2013). 23359502 PMC3578122
  27. [33]Saunders K. O., Secretion of MIP-1β and MIP-1α by CD8+ T-lymphocytes correlates with HIV-1 inhibition independent of coreceptor usage. Cell. Immunol. 266, 154– 164 (2011). 21030011 PMC3615706
  28. [34]Prévost-Blondel A., Roth E., Rosenthal F. M., Pircher H., Crucial role of TNF-alpha in CD8 T cell-mediated elimination of 3LL-A9 Lewis lung carcinoma cells in vivo. J. Immunol. 164, 3645– 3651 (2000). 10725721
  29. [35]Takeda K., IFN-γ is required for cytotoxic T cell-dependent cancer genome immunoediting. Nat. Commun. 8, 14607 (2017). 28233863 PMC5333095
  30. [36]Shiomi A., Usui T., Pivotal roles of GM-CSF in autoimmunity and inflammation. Mediators Inflamm. 2015, 568543 (2015). 25838639 PMC4370199
  31. [37]Smith L. K., Interleukin-10 directly inhibits CD8+ T cell function by enhancing N-glycan branching to decrease antigen sensitivity. Immunity 48, 299– 312.e5 (2018). 29396160 PMC5935130
  32. [38]Zhang Y., Aberrations in circulating inflammatory cytokine levels in patients with Down syndrome: A meta-analysis. Oncotarget 8, 84489– 84496 (2017). 29137441 PMC5663613
  33. [39]McLane L. M., Differential localization of T-bet and Eomes in CD8 T cell memory populations. J. Immunol. 190, 3207– 3215 (2013). 23455505 PMC3608800
  34. [41]Krieg C., Han P., Stone R., Goularte O. D., Kaye J., Functional analysis of B and T lymphocyte attenuator engagement on CD4+ and CD8+ T cells. J. Immunol. 175, 6420– 6427 (2005). 16272294
  35. [42]Ibegbu C. C., Expression of killer cell lectin-like receptor G1 on antigen-specific human CD8+ T lymphocytes during active, latent, and resolved infection and its relation with CD57. J. Immunol. 174, 6088– 6094 (2005). 15879103
  36. [43]Dolfi D. V., Increased T-bet is associated with senescence of influenza virus-specific CD8 T cells in aged humans. J. Leukoc. Biol. 93, 825– 836 (2013). 23440501 PMC4051188
  37. [44]Jankovic D., Kugler D. G., Sher A., IL-10 production by CD4+ effector T cells: A mechanism for self-regulation. Mucosal Immunol. 3, 239– 246 (2010). 20200511 PMC4105209
  38. [46]Duhen T., Campbell D. J., IL-1β promotes the differentiation of polyfunctional human CCR6+CXCR3+ Th1/17 cells that are specific for pathogenic and commensal microbes. J. Immunol. 193, 120– 129 (2014). 24890729 PMC4068296
  39. [47]Singh S. P., Zhang H. H., Foley J. F., Hedrick M. N., Farber J. M., Human T cells that are able to produce IL-17 express the chemokine receptor CCR6. J. Immunol. 180, 214– 221 (2008). 18097022
  40. [48]D’Alise A. M., The defect in T-cell regulation in NOD mice is an effect on the T-cell effectors. Proc. Natl. Acad. Sci. U.S.A. 105, 19857– 19862 (2008). 19073938 PMC2604930
  41. [49]Schneider A., The effector T cells of diabetic subjects are resistant to regulation via CD4+ FOXP3+ regulatory T cells. J. Immunol. 181, 7350– 7355 (2008). 18981158 PMC2597079
  42. [50]Venigalla R. K., Reduced CD4+,CD25- T cell sensitivity to the suppressive function of CD4+,CD25high,CD127 -/low regulatory T cells in patients with active systemic lupus erythematosus. Arthritis Rheum. 58, 2120– 2130 (2008). 18576316
  43. [51]Sullivan K. D., Pandey A., Smith K. P., Espinosa J. M., RNAseq from disomic and trisomic T cells and monocytes. Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE84531. Deposited 18 July 2016.
  44. [52]Krämer A., Green J., Pollard J. Jr, Tugendreich S., Causal analysis approaches in ingenuity pathway analysis. Bioinformatics 30, 523– 530 (2014). 24336805 PMC3928520
  45. [54]Kaur S., Critical roles for Rictor/Sin1 complexes in interferon-dependent gene transcription and generation of antiproliferative responses. J. Biol. Chem. 289, 6581– 6591 (2014). 24469448 PMC3945321
  46. [57]Joshi A. Y., Abraham R. S., Snyder M. R., Boyce T. G., Immune evaluation and vaccine responses in Down syndrome: Evidence of immunodeficiency? Vaccine 29, 5040– 5046 (2011). 21596078 PMC3909669
  47. [58]Bloemers B. L., van Bleek G. M., Kimpen J. L., Bont L., Distinct abnormalities in the innate immune system of children with Down syndrome. J. Pediatr. 156, 804– 809.e5 (2010). 20172534
  48. [59]Xing L., Alopecia areata is driven by cytotoxic T lymphocytes and is reversed by JAK inhibition. Nat. Med. 20, 1043– 1049 (2014). 25129481 PMC4362521
  49. [60]Blanco P., Increase in activated CD8+ T lymphocytes expressing perforin and granzyme B correlates with disease activity in patients with systemic lupus erythematosus. Arthritis Rheum. 52, 201– 211 (2005). 15641052
  50. [61]Snell L. M., Brooks D. G., New insights into type I interferon and the immunopathogenesis of persistent viral infections. Curr. Opin. Immunol. 34, 91– 98 (2015). 25771184 PMC4444376
  51. [62]Ambrosi A., Espinosa A., Wahren-Herlenius M., IL-17: A new actor in IFN-driven systemic autoimmune diseases. Eur. J. Immunol. 42, 2274– 2284 (2012). 22949326
  52. [63]Ihantola E. L., Effector T cell resistance to suppression and STAT3 signaling during the development of human type 1 diabetes. J. Immunol. 201, 1144– 1153 (2018). 30006377
  53. [64]Mercadante E. R., Lorenz U. M., Breaking free of control: How conventional T cells overcome regulatory T cell suppression. Front. Immunol. 7, 193 (2016). 27242798 PMC4870238
  54. [65]Schwartz D. M., JAK inhibition as a therapeutic strategy for immune and inflammatory diseases. Nat. Rev. Drug Discov. 17, 78 (2017). PMC6168198 29282366
  55. [66]Rachubinski A. L., Janus kinase inhibition in Down syndrome: 2 cases of therapeutic benefit for alopecia areata. JAAD Case Rep. 5, 365– 367 (2019). 31008170 PMC6453941
  56. [68]Sullivan K. D., RNAseq transcriptome analysis of White Blood Cells (WBCs) from individuals with and without trisomy 21. Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE128622. Deposited 20 March 2019.

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Authors
Araya, P., Waugh, K. A., Sullivan, K. D., Núñez, N. G., Roselli, E., Smith, K. P., Granrath, R. E., Rachubinski, A. L., Enriquez Estrada, B., Butcher, E. T., Minter, R., Tuttle, K. D., Bruno, T. C., Maccioni, M., & Espinosa, J. M.
Affiliations
  • Consejo Nacional de Investigaciones Científicas y Técnicas (AR)
  • University of Colorado Anschutz (US)
  • Linda Crnic Institute for Down Syndrome, University of Colorado Anschutz Medical Campus, Aurora, CO 80045;
  • University of Pittsburgh (US)
Corresponding author
Maccioni, Mariana
Venue
Proceedings of the National Academy of Sciences
Published
2019-11-07
Volume
116
Issue
48
Pages
24231-24241
ISSN
  • 0027-8424 (ISSN-L)
  • 1091-6490
OpenAlex
W2988167777
Cited by
179
References
9
Citations by year
2026: 22 · 2025: 20 · 2024: 55 · 2023: 13 · 2022: 26 · 2021: 27 · 2020: 16
FWCI
6.89
Type
journal article
Language
en
Open access
Locations
  • Proceedings of the National Academy of Sciences (publishedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • Conicet (submittedVersion, cc-by-nc-sa)
Funders
  • Linda Crnic Institute for Down Syndrome (N/A)
  • Global Down Syndrome Foundation (N/A)
  • PICT-RAICES (2016-2414)
  • HHS | National Institutes of Health (T32CA190216, R01AI145988)
Topics
  • Life Sciences › Immunology and Microbiology › Immunology › T-cell and B-cell Immunology
  • Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Down syndrome and intellectual disability research
  • Life Sciences › Immunology and Microbiology › Immunology › Immunodeficiency and Autoimmune Disorders
Keywords
Down syndrome, autoimmunity, T cell dysregulation, CD8+ T cells, CD4+ T cells, regulatory T cells, T cell differentiation, Th1/Th17 polarization, IL-17A, IL-22, TNF-α, T cell senescence, interferon signaling
MeSH terms
Adult, Cell Differentiation, Down Syndrome, Female, Humans, Interferon-gamma, Lymphocyte Activation, Male, Autoimmunity, Case-Control Studies, T-Lymphocyte Subsets, Interferon-alpha, Cellular Senescence, CD8-Positive T-Lymphocytes, Cell Lineage, Gene Expression Profiling, T-Lymphocytes, Regulatory, Young Adult

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