Single-molecule fluorescence resonance energy transfer reveals a dynamic equilibrium between closed and open conformations of syntaxin 1
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Protein conformational transitions form the molecular basis of many cellular processes, such as signal transduction and membrane traffic. However, in many cases, little is known about their structural dynamics. Here we have used dynamic single-molecule fluorescence to study at high time resolution, conformational transitions of syntaxin 1, a soluble N -ethylmaleimide-sensitive factor attachment protein receptors protein essential for exocytotic membrane fusion. Sets of syntaxin double mutants were randomly labeled with a mix of donor and acceptor dye and their fluorescence resonance energy transfer was measured. For each set, all fluorescence information was recorded simultaneously with high time resolution, providing detailed information on distances and dynamics that were used to create structural models. We found that free syntaxin switches between an inactive closed and an active open configuration with a relaxation time of 0.8 ms, explaining why regulatory proteins are needed to arrest the protein in one conformational state.
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All three acceptor-labeled monomers (K18, 3R MAP2, 4R MAP2) had added to the fibril end.
“Since the Förster radius for this pair is ∼6 nm (46) and energy transfer efficiency at longer distances drops precipitously, the data suggest that all three acceptor-labeled monomers (K18, 3R MAP2, and 4R MAP2) had added to the fibril end as schematically shown for K18 in the inset of Figure 5A.”
From MAP2 caps tau fibrils and inhibits aggregation (2023) · cites this paper as [46]
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Wilschut, J. (1990) · Cited by 2,407 · see citing works
Jahn, R., Lang, T., & Südhof, T. C. (2003) · Cell · doi:10.1016/s0092-8674(03)00112-0 · Cited by 1,331 · see citing works
Self-citationSNARE-mediated membrane fusion
Chen, Y. A., & Scheller, R. H. (2001) · Nature Reviews Molecular Cell Biology · doi:10.1038/35052017 · Cited by 1,133 · see citing works
A theory of fluorescence polarization decay in membranes
Kinosita, K., Kawato, S., & Ikegami, A. (1977) · Biophysical Journal · doi:10.1016/s0006-3495(77)85550-1 · Cited by 913 · see citing works
Hanson, P. I., Roth, R. A., Morisaki, H., Jahn, R., & Heuser, J. E. (1997) · Cell · doi:10.1016/s0092-8674(00)80512-7 · Cited by 797 · see citing works
Self-citationThree-dimensional structure of the neuronal-Sec1–syntaxin 1a complex
Misura, K. M. S., Scheller, R. H., & Weis, W. I. (2000) · Nature · doi:10.1038/35006120 · Cited by 786 · see citing works
A conformational switch in syntaxin during exocytosis: role of munc18
Dulubova, I., Sugita, S., Hill, S., Hosaka, M., Fernández, I., Südhof, T., & Rizo, J. (1999) · EMBO Journal · doi:10.1093/emboj/18.16.4372 · Cited by 772 · see citing works
Resonance Energy Transfer: Theory and Data
van der Meer, B. W., Coker, E. G., & Chen, S.-Y. S. (1994) · Cited by 679 · see citing works
Deniz, A. A., Dahan, M., Grunwell, J. R., Ha, T., Faulhaber, A. E., Chemla, D. S., Weiss, S., & Schultz, P. G. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.7.3670 · Cited by 548 · see citing works
Snares and Munc18 in synaptic vesicle fusion
Rizo, J., & Südhof, T. C. (2002) · Nature Reviews Neuroscience · doi:10.1038/nrn898 · Cited by 539 · see citing works
[13] Fluorescence resonance energy transfer
Selvin, P. R. (1995) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/0076-6879(95)46015-2 · Cited by 521 · see citing works
Correlating Structural Dynamics and Function in Single Ribozyme Molecules
Zhuang, X., Kim, H. D., Pereira, M. J. B., Babcock, H. P., Walter, N. G., & Chu, S. (2002) · Science · doi:10.1126/science.1069013 · Cited by 512 · see citing works
Eggeling, C., Berger, S., Brand, L., Fries, J. R., Schaffer, J., Volkmer, A., & Seidel, C. A. M. (2001) · Journal of Biotechnology · doi:10.1016/s0168-1656(00)00412-0 · Cited by 268 · see citing works
Self-citationKim, H. D., Nienhaus, G. U., Ha, T., Orr, J. W., Williamson, J. R., & Chu, S. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.032077799 · Cited by 253 · see citing works
Rothwell, P. J., Berger, S., Kensch, O., Felekyan, S., Antonik, M. D., Wöhrl, B. M., Restle, T., Goody, R. S., & Seidel, C. A. M. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0434003100 · Cited by 225 · see citing works
Self-citationSly1 binds to Golgi and ER syntaxins via a conserved N-terminal peptide motif.
Yamaguchi, T., Dulubova, I., Min, S.-W., Chen, X., Rizo, J., & Südhof, T. (2002) · Developmental Cell · doi:10.1016/s1534-5807(02)00125-9 · Cited by 223 · see citing works
How Tlg2p/syntaxin 16 'snares’ Vps45
Dulubova, I., Yamaguchi, T., Gao, Y., Min, S., Huryeva, I., Südhof, T. C., & Rizo, J. (2002) · The EMBO Journal · doi:10.1093/emboj/cdf381 · Cited by 204 · see citing works
Fries, J. R., Brand, L., Eggeling, C., Köllner, M., & Seidel, C. A. M. (1998) · The Journal of Physical Chemistry A · doi:10.1021/jp980965t · Cited by 182 · see citing works
Self-citationKappa-squared: from nuisance to new sense
van der Meer, B. W. (2002) · Reviews in Molecular Biotechnology · doi:10.1016/s1389-0352(01)00037-x · Cited by 182 · see citing works
Identification of Single Molecules in Aqueous Solution by Time-Resolved Fluorescence Anisotropy
Schaffer, J., Volkmer, A., Eggeling, C., Subramaniam, V., Striker, G., & Seidel, C. A. M. (1998) · The Journal of Physical Chemistry A · doi:10.1021/jp9833597 · Cited by 181 · see citing works
Self-citationStructural basis for the Golgi membrane recruitment of Sly1p by Sed5p
Bracher, A., & Weissenhorn, W. (2002) · The EMBO Journal · doi:10.1093/emboj/cdf608 · Cited by 174 · see citing works
Interactions within the yeast t-SNARE Sso1p that control SNARE complex assembly.
Hughson, F. M., Munson, M., Chen, X., Cocina, A. E., & Schultz, S. M. (2000) · Nature Structural Biology · doi:10.1038/79659 · Cited by 164 · see citing works
Ratiometric measurement and identification of single diffusing molecules
Dahan, M., Deniz, A. A., Ha, T., Chemla, D. S., Schultz, P. G., & Weiss, S. (1999) · Chemical Physics · doi:10.1016/s0301-0104(99)00132-9 · Cited by 158 · see citing works
Single-Molecule Approach to Enzymology
Xie, S. X. (2001) · Single Molecules · doi:10.1002/1438-5171(200112)2:4 · Cited by 150 · see citing works
Self-citationHomo- and Heterooligomeric SNARE Complexes Studied by Site-directed Spin Labeling
Margittai, M., Fasshauer, D., Pabst, S., Jahn, R., & Langen, R. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m010653200 · Cited by 146 · see citing works
Self-citationVam3p structure reveals conserved and divergent properties of syntaxins.
Dulubova, I., Yamaguchi, T., Wang, Y., Südhof, T. C., & Rizo, J. (2001) · Nature Structural Biology · doi:10.1038/85012 · Cited by 145 · see citing works
Jahn, R. (2000) · Neuron · doi:10.1016/s0896-6273(00)00029-5 · Cited by 105 · see citing works
Self-citationWidengren, J., Schweinberger, E., Berger, S., & Seidel, C. A. M. (2001) · The Journal of Physical Chemistry A · doi:10.1021/jp010301a · Cited by 94 · see citing works
Self-citationTian, J.-H., Das, S., & Sheng, Z. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m300492200 · Cited by 91 · see citing works
Antonin, W., Dulubova, I., Araç, D., Pabst, S., Plitzner, J., Rizo, J., & Jahn, R. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m204369200 · Cited by 72 · see citing works
Self-citationEggeling, C., Schaffer, J., Seidel, C. A. M., Korte, J., Brehm, G., Schneider, S., & Schrof, W. (2001) · The Journal of Physical Chemistry A · doi:10.1021/jp002552+ · Cited by 63 · see citing works
Self-citationMajoul, I. V., Straub, M., Duden, R., Hell, S. W., & Söling, H. (2002) · Reviews in Molecular Biotechnology · doi:10.1016/s1389-0352(01)00042-3 · Cited by 56 · see citing works
The Habc Domain and the SNARE Core Complex Are Connected by a Highly Flexible Linker
Margittai, M., Fasshauer, D., Jahn, R., & Langen, R. (2003) · Biochemistry · doi:10.1021/bi027437z · Cited by 54 · see citing works
Self-citationKamlet−Taft Solvatochromic Parameters of the Sub- and Supercritical Fluorinated Ethane Solvents
Lagalante, A. F., Hall, R. L., & Bruno, T. J. (1998) · The Journal of Physical Chemistry B · doi:10.1021/jp980685d · Cited by 43 · see citing works
THE PHOTOPHYSICS OF AROMATIC EXCIMERS
Birks, J. B. (1975) · Elsevier eBooks · doi:10.1016/b978-0-12-290650-3.50009-9 · Cited by 25 · see citing works
Carr, C. M. (2001) · Nature Structural Biology · doi:10.1038/84895 · Cited by 10 · see citing works
Flagged first, then by citations
Research works printed but not linked: 33
- [1]Chen, Y. A. & Scheller, R. H. (2001) Nat. Rev. Mol. Cell Biol. 2, 98–106. [DOI] [PubMed] [Google Scholar]
- [2]Rizo, J. & Sudhof, T. C. (2002) Nat. Rev. Neurosci. 3, 641–653. [DOI] [PubMed] [Google Scholar]
- [3]Jahn, R., Lang, T. & Sudhof, T. C. (2003) Cell 112, 519–533. [DOI] [PubMed] [Google Scholar]
- [4]Misura, K. M. S., Scheller, R. H. & Weis, W. I. (2000) Nature 404, 355–362. [DOI] [PubMed] [Google Scholar]
- [5]Carr, C. M. (2001) Nat. Struct. Biol. 8, 186–188. [DOI] [PubMed] [Google Scholar]
- [6]Eggeling, C., Berger, S., Brand, L., Fries, J. R., Schaffer, J., Volkmer, A. & Seidel, C. A. M. (2001) J. Biotechnol. 86, 163–180. [DOI] [PubMed] [Google Scholar]
- [7]Kühnemuth, R. & Seidel, C. A. M. (2001) Single Mol. 2, 251–254. [Google Scholar]
- [9]van der Meer, B. W. (2002) Rev. Mol. Biotech. 82, 181–196. [DOI] [PubMed] [Google Scholar]
- [10]Majoul, I., Straub, M., Duden, R., Hell, S. W. & Söling, H. D. (2002) Rev. Mol. Biotech. 82, 267–277. [DOI] [PubMed] [Google Scholar]
- [11]Selvin, P. R. (1995) Methods Enzymol. 246, 301–335. [DOI] [PubMed] [Google Scholar]
- [12]Zhuang, X., Kim, H., Pereira, M. J. B., Babcock, H. P., Walter, N. G. & Chu, S. (2002) Science 296, 1473–1476. [DOI] [PubMed] [Google Scholar]
- [13]Dahan, M., Deniz, A. A., Ha, T. J., Chemla, D. S., Schultz, P. G. & Weiss, S. (1999) Chem. Phys. 247, 85–106. [Google Scholar]
- [14]Deniz, A. A., Dahan, M., Grunwell, J. R., Ha, T. J., Faulhaber, A. E., Chemla, D. S., Weiss, S. & Schultz, P. G. (1999) Proc. Natl. Acad. Sci. USA 96, 3670–3675. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [15]Kim, H. D., Nienhaus, G. U., Ha, T., Orr, J. W., Williamson, J. R. & Chu, S. (2002) Proc. Natl. Acad. Sci. USA 99, 4284–4289. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [16]Margittai, M., Fasshauer, D., Pabst, S., Jahn, R. & Langen, R. (2001) J. Biol. Chem. 276, 13169–13177. [DOI] [PubMed] [Google Scholar]
- [17]Rothwell, P. J., Berger, S., Kensch, O., Felekyan, S., Antonik, M., Wöhrl, B. M., Restle, T., Goody, R. S. & Seidel, C. A. M. (2003) Proc. Natl. Acad. Sci. USA 100, 1655–1660. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [18]Schaffer, J., Volkmer, A., Eggeling, C., Subramaniam, V., Striker, G. & Seidel, C. A. M. (1999) J. Phys. Chem. A 103, 331–336. [Google Scholar]
- [19]Fries, J. R., Brand, L., Eggeling, C., Köllner, M. & Seidel, C. A. M. (1998) J. Phys. Chem. A 102, 6601–6613. [Google Scholar]
- [20]Widengren, J., Schweinberger, E., Berger, S. & Seidel, C. A. M. (2001) J. Phys. Chem. A 105, 6851–6866. [Google Scholar]
- [21]Birks, J. B. (1975) in International Exciplex Conference, eds. Gordon, M. & Ware, W. R. (Academic, London), pp. 39–73.
- [22]Eggeling, C., Schaffer, J., Seidel, C. A. M., Korte, J., Brehm, G., Schneider, S. & Schrof, W. (2001) J. Phys. Chem. A 105, 3673–3679. [Google Scholar]
- [23]Hanson, P. I., Roth, R., Morisaki, H., Jahn, R. & Heuser, J. E. (1997) Cell 90, 523–535. [DOI] [PubMed] [Google Scholar]
- [24]Margittai, M., Fasshauer, D., Jahn, R. & Langen, R. (2003) Biochemistry 42, 4009–4014. [DOI] [PubMed] [Google Scholar]
- [25]Kinosita, K., Jr., Kawato, S. & Ikegami, A. (1977) Biophys. J. 20, 289–305. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [26]Jahn, R. (2000) Neuron 27, 201–204. [DOI] [PubMed] [Google Scholar]
- [27]Dulubova, I., Sugita, S., Hill, S., Hosaka, M., Fernandez, I., Südhof, T. C. & Rizo, J. (1999) EMBO J. 18, 4372–4382. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [28]Munson, M., Chen, X., Cocina, A. E., Schultz, S. M. & Hughson, F. M. (2000) Nat. Struct. Biol. 7, 894–902. [DOI] [PubMed] [Google Scholar]
- [29]Antonin, W., Dulubova, I., Araç, D., Pabst, S., Plitzner, J., Rizo, J. & Jahn, R. (2002) J. Biol. Chem. 277, 36449–36456. [DOI] [PubMed] [Google Scholar]
- [30]Dulubova, I., Yamaguchi, T., Wang, Y., Südhof, T. C. & Rizo, J. (2001) Nat. Struct. Biol. 8, 258–264. [DOI] [PubMed] [Google Scholar]
- [31]Dulubova, I., Yamaguchi, T., Gao, Y., Min, S. W., Huryeva, I., Südhof, T. C. & Rizo, J. (2002) EMBO J. 21, 3620–3631. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [32]Bracher, A. & Weissenhorn, W. (2002) EMBO J. 21, 6114–6124. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [33]Yamaguchi, T., Dulubova, I., Min, S. W., Chen, X. H., Rizo, J. & Sudhof, T. C. (2002) Developmental Cell 2, 295–305. [DOI] [PubMed] [Google Scholar]
- [34]Tian, J. H., Das, S. & Sheng, Z. H. (2003) J. Biol. Chem. 278, 26265–26274. [DOI] [PubMed] [Google Scholar]
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Hoefling, M., Lima, N., Haenni, D., Seidel, C. A. M., Schuler, B., & Grubmüller, H. (2011) · PLoS ONE · doi:10.1371/journal.pone.0019791 · Cited by 118 · see citing works
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Dingjan, I., Linders, P. T. A., Verboogen, D. R. J., Revelo, N. H., ter Beest, M., & van den Bogaart, G. (2018) · Physiological Reviews · doi:10.1152/physrev.00037.2017 · Cited by 113 · see citing works
Kalinin, S., Sisamakis, E., Magennis, S. W., Felekyan, S., & Seidel, C. A. M. (2010) · The Journal of Physical Chemistry B · doi:10.1021/jp100025v · Cited by 113 · see citing works
Self-citationDevelopment of new photon-counting detectors for single-molecule fluorescence microscopy
Michalet, X., Colyer, R. A., Scalia, G., Ingargiola, A., Lin, R. R., Millaud, J. E., Weiss, S., Siegmund, O. H. W., Tremsin, A. S., Vallerga, J. V., et al. (2012) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2012.0035 · Cited by 112 · see citing works
Leung, Y. M., Kwan, E. P., Ng, B., Kang, Y., & Gaisano, H. Y. (2007) · Endocrine Reviews · doi:10.1210/er.2007-0010 · Cited by 106 · see citing works
Chung, H. S., Gopich, I. V., McHale, K., Cellmer, T., Louis, J. M., & Eaton, W. A. (2010) · The Journal of Physical Chemistry A · doi:10.1021/jp1009669 · Cited by 109 · see citing works
Quantitative Single-Molecule Conformational Distributions: A Case Study with Poly-( l -proline)
Watkins, L. P., Chang, H., & Yang, H. (2006) · The Journal of Physical Chemistry A · doi:10.1021/jp055886d · Cited by 108 · see citing works
Felekyan, S., Kalinin, S., Sanabria, H., Valeri, A., & Seidel, C. A. M. (2012) · ChemPhysChem · doi:10.1002/cphc.201100897 · Cited by 107 · see citing works
Self-citationSingle-Molecule Studies of the Neuronal SNARE Fusion Machinery
Brunger, A. T., Weninger, K., Bowen, M., & Chu, S. (2009) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.77.070306.103621 · Cited by 107 · see citing works
36° step size of proton‐driven c‐ring rotation in FoF1‐ATP synthase
Düser, M. G., Zarrabi, N., Cipriano, D. J., Ernst, S., Glick, G. D., Dunn, S. D., & Börsch, M. (2009) · The EMBO Journal · doi:10.1038/emboj.2009.213 · Cited by 105 · see citing works
Single-molecule studies of synaptotagmin and complexin binding to the SNARE complex.
Bowen, M., Weninger, K., Ernst, J., Chu, S., & Brunger, A. (2005) · Biophysical Journal · doi:10.1529/biophysj.104.054064 · Cited by 101 · see citing works
Three-dimensional molecular modeling with single molecule FRET
Brünger, A. T., Strop, P., Vrljic, M., Chu, S., & Weninger, K. (2010) · Journal of Structural Biology · doi:10.1016/j.jsb.2010.09.004 · Cited by 103 · see citing works
Fast single-molecule FRET spectroscopy: theory and experiment
Chung, H. S., & Gopich, I. V. (2014) · Physical Chemistry Chemical Physics · doi:10.1039/c4cp02489c · Cited by 100 · see citing works
Recent advances in FRET for the study of protein interactions and dynamics
Okamoto, K., & Sako, Y. (2017) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2017.03.010 · Cited by 100 · see citing works
Sabanayagam, C. R., Eid, J. S., & Meller, A. (2005) · The Journal of Chemical Physics · doi:10.1063/1.1854120 · Cited by 100 · see citing works
Andrecka, J., Treutlein, B., Arcusa, M. A. I., Muschielok, A., Lewis, R., Cheung, A. C. M., Cramer, P., & Michaelis, J. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp601 · Cited by 93 · see citing works
Fluorescence correlation spectroscopy of molecular motions and kinetics
Gösch, M., & Rigler, R. W. (2005) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2004.07.016 · Cited by 91 · see citing works
Characterizing Single‐Molecule FRET Dynamics with Probability Distribution Analysis
Santoso, Y., Torella, J. P., & Kapanidis, A. N. (2010) · ChemPhysChem · doi:10.1002/cphc.201000129 · Cited by 91 · see citing works
A Starting Point for Fluorescence-Based Single-Molecule Measurements in Biomolecular Research
Gust, A., Zander, A., Gietl, A., Holzmeister, P., Schulz, S., Lalkens, B., Tinnefeld, P., & Grohmann, D. (2014) · Molecules · doi:10.3390/molecules191015824 · Cited by 88 · see citing works
A single-vesicle content mixing assay for SNARE-mediated membrane fusion
Diao, J., Su, Z., Ishitsuka, Y., Lu, B., Lee, K. S., Lai, Y., Shin, Y., & Ha, T. (2010) · Nature Communications · doi:10.1038/ncomms1054 · Cited by 87 · see citing works
Kalinin, S., Felekyan, S., Antonik, M. D., & Seidel, C. A. M. (2007) · The Journal of Physical Chemistry B · doi:10.1021/jp072293p · Cited by 86 · see citing works
Self-citationComplex RNA Folding Kinetics Revealed by Single-Molecule FRET and Hidden Markov Models
Keller, B. G., Kobitski, A., Jäschke, A., Nienhaus, G. U., & Noé, F. (2014) · Journal of the American Chemical Society · doi:10.1021/ja4098719 · Cited by 84 · see citing works
Fluorescence Applications in Molecular Neurobiology
Taraska, J. W., & Zagotta, W. N. (2010) · Neuron · doi:10.1016/j.neuron.2010.02.002 · Cited by 84 · see citing works
Peulen, T.-O., Opanasyuk, O., & Seidel, C. A. M. (2017) · The Journal of Physical Chemistry B · doi:10.1021/acs.jpcb.7b03441 · Cited by 84 · see citing works
Self-citationBoldt, F. M., Heınze, J., Diez, M., Petersen, J., & Börsch, M. (2004) · Analytical Chemistry · doi:10.1021/ac049635x · Cited by 83 · see citing works
Taraska, J. W., Puljung, M. C., & Zagotta, W. N. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0905207106 · Cited by 82 · see citing works
Chen, H., Rhoades, E. R., Butler, J. S., Loh, S. N., & Webb, W. W. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0704073104 · Cited by 79 · see citing works
Kalinin, S., Felekyan, S., Valeri, A., & Seidel, C. A. M. (2008) · The Journal of Physical Chemistry B · doi:10.1021/jp711942q · Cited by 76 · see citing works
Self-citationPlasma membrane targeting of exocytic SNARE proteins
Salaün, C., James, D. J., Greaves, J., & Chamberlain, L. H. (2004) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2004.05.008 · Cited by 75 · see citing works
Wu, B., Wang, Z., Huang, Y. R., & Liu, W. R. (2012) · ChemBioChem · doi:10.1002/cbic.201200281 · Cited by 73 · see citing works
Kim, J., Kim, C., & Lee, N. K. (2015) · Nature Communications · doi:10.1038/ncomms7992 · Cited by 73 · see citing works
Dynamical Organization of Syntaxin-1A at the Presynaptic Active Zone
Ullrich, A., Böhme, M. A., Schöneberg, J., Depner, H., Sigrist, S. J., & Noé, F. (2015) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1004407 · Cited by 72 · see citing works
Multiparameter fluorescence imagespectroscopy to study molecular interactions
Weidtkamp‐Peters, S., Felekyan, S., Bleckmann, A., Simon, R. G., Becker, W. H., Kühnemuth, R., & Seidel, C. A. M. (2009) · Photochemical & Photobiological Sciences · doi:10.1039/b903245m · Cited by 71 · see citing works
Self-citationSizing up single-molecule enzymatic conformational dynamics
Lu, H. P. (2013) · Chemical Society Reviews · doi:10.1039/c3cs60191a · Cited by 70 · see citing works
Determinants of Synaptobrevin Regulation in Membranes
Siddiqui, T. J., Vites, O., Stein, A., Heintzmann, R., Jahn, R., & Fasshauer, D. (2007) · Molecular Biology of the Cell · doi:10.1091/mbc.e07-01-0049 · Cited by 70 · see citing works
Self-citationApplication of Single Molecule Förster Resonance Energy Transfer to Protein Folding
Schuler, B. (2006) · Humana Press eBooks · doi:10.1385/1-59745-189-4:115 · Cited by 70 · see citing works
Applying spectral fingerprinting to the analysis of FRET images
Neher, R. A., & Neher, E. (2004) · Microscopy Research and Technique · doi:10.1002/jemt.20078 · Cited by 69 · see citing works
Calmodulin, Conformational States, and Calcium Signaling. A Single-Molecule Perspective
Johnson, C. K. (2006) · Biochemistry · doi:10.1021/bi061058e · Cited by 68 · see citing works
Automated and optimally FRET-assisted structural modeling
Dimura, M., Peulen, T.-O., Sanabria, H., Rodnin, D., Hemmen, K., Hanke, C. A., Seidel, C. A. M., & Gohlke, H. (2020) · Nature Communications · doi:10.1038/s41467-020-19023-1 · Cited by 65 · see citing works
Self-citationPark, M., Touihri, S., Müller, I. K., Mayer, U., & Jürgens, G. (2012) · Developmental Cell · doi:10.1016/j.devcel.2012.03.002 · Cited by 65 · see citing works
Supertertiary structure of the synaptic MAGuK scaffold proteins is conserved
McCann, J. J., Zheng, L., Rohrbeck, D., Felekyan, S., Kühnemuth, R., Sutton, R. B., Seidel, C. A. M., & Bowen, M. E. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1200254109 · Cited by 65 · see citing works
Self-citationMojumdar, S. S., Chowdhury, R., Chattoraj, S., & Bhattacharyya, K. (2012) · The Journal of Physical Chemistry B · doi:10.1021/jp307297s · Cited by 65 · see citing works
Quantitative Interpretation of FRET Experiments via Molecular Simulation: Force Field and Validation
Best, R. B., Hofmann, H., Nettels, D., & Schuler, B. (2015) · Biophysical Journal · doi:10.1016/j.bpj.2015.04.038 · Cited by 64 · see citing works
Roder, F., Waichman, S., Paterok, D., Schubert, R., Richter, C. P., Liedberg, B., & Piehler, J. (2011) · Analytical Chemistry · doi:10.1021/ac201294v · Cited by 63 · see citing works
Mazal, H., Iljina, M., Barak, Y., Elad, N., Rosenzweig, R., Goloubinoff, P., Riven, I., & Haran, G. (2019) · Nature Communications · doi:10.1038/s41467-019-09474-6 · Cited by 63 · see citing works
Slaughter, B. D., Allen, M. W., Unruh, J. R., Urbauer, R. J. B., & Johnson, C. K. (2004) · The Journal of Physical Chemistry B · doi:10.1021/jp040098u · Cited by 63 · see citing works
A dual function for Munc‐18 in exocytosis of PC12 cells
Schütz, D., Zilly, F. E., Lang, T., Jahn, R., & Bruns, D. (2005) · European Journal of Neuroscience · doi:10.1111/j.1460-9568.2005.04095.x · Cited by 63 · see citing works
Self-citationNMR analysis of the closed conformation of syntaxin-1
Chen, X., Lu, J., Dulubova, I., & Rizo, J. (2008) · Journal of Biomolecular NMR · doi:10.1007/s10858-008-9239-1 · Cited by 61 · see citing works
Syntaxin/Munc18 Interactions in the Late Events during Vesicle Fusion and Release in Exocytosis
Graham, M. E., Barclay, J. W., & Burgoyne, R. D. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m400827200 · Cited by 61 · see citing works
Dynamic Architecture of a Minimal RNA Polymerase II Open Promoter Complex
Treutlein, B., Muschielok, A., Andrecka, J., Jawhari, A., Buchen, C., Kostrewa, D., Hög, F., Cramer, P., & Michaelis, J. (2012) · Molecular Cell · doi:10.1016/j.molcel.2012.02.008 · Cited by 60 · see citing works
Merrins, M. J., Chang, L. C., Lam, A. D., Ernst, S. A., & Stuenkel, E. L. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m610818200 · Cited by 60 · see citing works
Naganathan, A. N., & Orozco, M. (2011) · Journal of the American Chemical Society · doi:10.1021/ja204053n · Cited by 59 · see citing works
Wennmalm, S., Chmyrov, V., Widengren, J., & Tjernberg, L. O. (2015) · Analytical Chemistry · doi:10.1021/acs.analchem.5b02630 · Cited by 59 · see citing works
Self-citationOrden, A. K. V., & Jung, J. (2007) · Biopolymers · doi:10.1002/bip.20826 · Cited by 57 · see citing works
Barth, A., Opanasyuk, O., Peulen, T.-O., Felekyan, S., Kalinin, S., Sanabria, H., & Seidel, C. A. M. (2022) · The Journal of Chemical Physics · doi:10.1063/5.0089134 · Cited by 56 · see citing works
Self-citationSingle-Molecule FRET TACKLE Reveals Highly Dynamic Mismatched DNA−MutS Complexes
Sass, L. E., Lanyi, C., Weninger, K., & Erie, D. A. (2010) · Biochemistry · doi:10.1021/bi901871u · Cited by 56 · see citing works
Muschielok, A., & Michaelis, J. (2011) · The Journal of Physical Chemistry B · doi:10.1021/jp2060377 · Cited by 53 · see citing works
Ding, W., Hsu, L., Heaps, C. W., & Schatz, G. C. (2018) · The Journal of Physical Chemistry C · doi:10.1021/acs.jpcc.8b07210 · Cited by 53 · see citing works
Liu, J., Ernst, S. A., Gladycheva, S. E., Lee, Y. Y. F., Lentz, S. I., Ho, C. S., Li, Q., & Stuenkel, E. L. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m410024200 · Cited by 52 · see citing works
Allosteric Switching of Calmodulin in a Mycobacterium smegmatis porin A (MspA) Nanopore‐Trap
Liu, Y., Pan, T., Wang, K., Wang, Y., Yan, S., Wang, L., Zhang, S., Du, X., Jia, W., Zhang, P., et al. (2021) · Angewandte Chemie International Edition · doi:10.1002/anie.202110545 · Cited by 51 · see citing works
Price, E. S., DeVore, M. S., & Johnson, C. K. (2010) · The Journal of Physical Chemistry B · doi:10.1021/jp912125z · Cited by 51 · see citing works
- Authors
- Margittai, M., Widengren, J., Schweinberger, E., Schröder, G. F., Felekyan, S., Haustein, E., König, M., Fasshauer, D., Grubmüller, H., Jahn, R., & Seidel, C. A. M.
- Affiliations
- Max Planck Institute for Biophysical Chemistry (DE)
- Max Planck Society (DE)
- Max-Planck-Institut für Biophysikalische Chemie, Am Fassberg 11, 37077 Göttingen, Germany
- ORCID
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2003-12-10
- Volume
- 100
- Issue
- 26
- Pages
- 15516-15521
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC307599
- OpenAlex
- W2128978059
- Cited by
- 290
- References
- 36
- Citations by year
- 2026: 1 · 2024: 5 · 2023: 9 · 2022: 9 · 2021: 11 · 2020: 3 · 2019: 9 · 2018: 5 · 2017: 10 · 2016: 9 · 2015: 13 · 2014: 10 · 2013: 12 · 2012: 23
- FWCI
- 7.43
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Max Planck Institute for Plasma Physics (submittedVersion)
- GRO (submittedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion, other-oa)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biophysics › Advanced Fluorescence Microscopy Techniques
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Keywords
- syntaxin-1, conformational dynamics, SNARE proteins, exocytosis, membrane fusion, single-molecule fluorescence resonance energy transfer, protein structural dynamics
- MeSH terms
- Antigens, Surface, Cysteine, Kinetics, Models, Molecular, Nerve Tissue Proteins, Protein Conformation, Recombinant Proteins, Serine, Mutagenesis, Site-Directed, Amino Acid Substitution, Fluorescence Resonance Energy Transfer, Syntaxin 1
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